Wall clock time and date at job start Tue Mar 31 2020 12:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99871 * 2 1 4 4 C 1.38215 * 120.00234 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99570 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47609 * 260.00123 * 6 5 4 8 8 C 1.34770 * 120.00278 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00020 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.47419 * 125.64850 * 359.97438 * 10 8 7 12 12 C 1.54905 * 104.83258 * 155.91019 * 11 10 8 13 13 C 1.55153 * 101.58432 * 37.00633 * 12 11 10 14 14 O 1.42899 * 110.72123 * 83.04292 * 13 12 11 15 15 C 1.50702 * 110.72079 * 206.13591 * 13 12 11 16 16 H 1.08002 * 120.00299 * 357.56389 * 15 13 12 17 17 C 1.37884 * 119.99942 * 177.27948 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47319 * 125.61416 * 180.20438 * 10 8 7 24 24 C 1.38211 * 120.00125 * 0.28186 * 5 4 3 25 25 C 1.50697 * 119.99632 * 179.72559 * 24 5 4 26 26 C 1.38214 * 120.00435 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47028 * 90.00078 * 1 2 3 28 28 H 1.08995 * 109.47024 * 210.00192 * 1 2 3 29 29 H 1.08999 * 109.47412 * 330.00128 * 1 2 3 30 30 H 1.07997 * 120.00023 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00433 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46891 * 140.00390 * 6 5 4 33 33 H 1.09003 * 109.47464 * 20.00882 * 6 5 4 34 34 H 0.97003 * 119.99773 * 0.02562 * 7 6 5 35 35 H 1.08994 * 110.36742 * 37.06455 * 11 10 8 36 36 H 1.09008 * 110.36374 * 274.74316 * 11 10 8 37 37 H 1.09004 * 111.00291 * 278.93328 * 12 11 10 38 38 H 1.09005 * 111.00807 * 155.08431 * 12 11 10 39 39 H 0.96699 * 114.00083 * 182.43988 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.06766 * 61.67566 * 23 10 8 42 42 H 1.08999 * 109.85130 * 300.41923 * 23 10 8 43 43 H 1.09004 * 109.47517 * 90.00017 * 25 24 5 44 44 H 1.09002 * 109.46627 * 209.99334 * 25 24 5 45 45 H 1.09001 * 109.47673 * 329.99282 * 25 24 5 46 46 H 1.07996 * 119.99496 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0016 7 7 6.2671 -0.2408 -1.3584 8 6 7.5921 -0.2832 -1.6009 9 8 8.3822 -0.1219 -0.6909 10 7 8.0415 -0.5054 -2.8520 11 6 7.1985 -0.7182 -4.0425 12 6 8.0926 -0.3096 -5.2397 13 6 9.4831 -0.8208 -4.7788 14 8 9.6318 -2.2121 -5.0688 15 6 10.5858 -0.0226 -5.4254 16 1 10.3449 0.7543 -6.1360 17 6 11.9020 -0.2801 -5.1054 18 7 12.1953 -1.2261 -4.2402 19 14 13.2684 0.7145 -5.9011 20 1 13.5595 1.9097 -5.0693 21 1 14.4904 -0.1221 -6.0102 22 1 12.8416 1.1465 -7.2562 23 6 9.4566 -0.5806 -3.2546 24 6 3.5806 -1.1969 -0.0037 25 6 4.3342 -2.5019 -0.0088 26 6 2.1981 -1.1969 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1328 0.0001 32 1 6.1420 -0.7866 0.6629 33 1 6.1420 0.9661 0.3524 34 1 5.6368 -0.3692 -2.0844 35 1 6.3120 -0.0855 -3.9977 36 1 6.9132 -1.7672 -4.1228 37 1 8.0982 0.7724 -5.3717 38 1 7.7750 -0.8114 -6.1538 39 1 10.4694 -2.5894 -4.7669 40 1 13.1214 -1.4075 -4.0153 41 1 9.9484 -1.4064 -2.7405 42 1 9.9589 0.3575 -3.0185 43 1 4.5155 -2.8209 1.0176 44 1 3.7453 -3.2594 -0.5261 45 1 5.2869 -2.3694 -0.5217 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591922456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:48 Heat of formation + Delta-G solvation = -62.387709 kcal Electronic energy + Delta-G solvation = -26681.090264 eV Core-core repulsion = 22956.039299 eV Total energy + Delta-G solvation = -3725.050965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17218 -39.35899 -37.39807 -35.16974 -34.23981 -33.06570 -32.19681 -32.17879 -30.06381 -28.44178 -27.64938 -27.30079 -25.27368 -24.08794 -22.50474 -22.28054 -20.33494 -19.67735 -19.43031 -17.68030 -17.07240 -16.25215 -16.06546 -15.56822 -15.23293 -14.96182 -14.89971 -14.36143 -14.23646 -13.88180 -13.61607 -13.36994 -13.34755 -12.98935 -12.84309 -12.83741 -12.74336 -12.34754 -12.20874 -12.03106 -11.77415 -11.63798 -11.41038 -11.12981 -11.07895 -11.02448 -10.79143 -10.63882 -10.49081 -10.15265 -9.65268 -9.31238 -8.96046 -8.83034 -8.69156 -8.65400 -8.29484 -7.74082 -6.27007 -4.35314 1.02568 1.19156 3.11943 3.22975 3.30066 3.32729 3.61204 3.75933 4.28143 4.50061 4.53739 4.55356 4.69387 4.75365 4.98461 5.00890 5.11850 5.28564 5.29100 5.39907 5.43840 5.49934 5.52401 5.61780 5.67803 5.71966 5.74518 5.82225 5.94129 6.03592 6.05331 6.12568 6.24376 6.35987 6.48832 6.52477 6.73772 6.74644 6.81461 6.90455 7.00355 7.27823 7.34369 7.65717 7.75268 8.04642 8.54797 8.68383 9.14361 9.32352 9.42042 10.80865 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026751 B = 0.002628 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.436907 B =10651.452097 C =10711.944130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.092 4.092 5 C -0.111 4.111 6 C 0.182 3.818 7 N -0.747 5.747 8 C 0.715 3.285 9 O -0.597 6.597 10 N -0.630 5.630 11 C 0.104 3.896 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.122 3.878 24 C -0.060 4.060 25 C -0.124 4.124 26 C -0.125 4.125 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.384 0.616 40 H 0.270 0.730 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.063 0.897 7.213 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.058 3.942 7 N -0.405 5.405 8 C 0.417 3.583 9 O -0.476 6.476 10 N -0.367 5.367 11 C -0.020 4.020 12 C -0.154 4.154 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.000 4.000 24 C -0.060 4.060 25 C -0.181 4.181 26 C -0.143 4.143 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.228 0.772 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.893 1.015 7.799 22.325 hybrid contribution 1.003 0.442 -0.377 1.159 sum -19.890 1.457 7.422 21.280 Atomic orbital electron populations 1.20799 0.91250 1.02715 1.02376 1.19941 0.96016 0.93198 0.98807 1.20994 0.94058 0.97522 1.02266 1.21104 0.94132 0.97572 0.98207 1.19823 0.95077 0.92991 1.03251 1.19897 0.88171 1.02167 0.83932 1.45181 1.05623 1.79606 1.10066 1.15524 0.81929 0.78423 0.82439 1.90887 1.54916 1.58520 1.43293 1.48032 1.09898 1.73774 1.05020 1.22222 0.93601 0.99777 0.86354 1.22721 0.95760 1.00684 0.96202 1.19496 0.91191 0.80626 0.87959 1.86085 1.44190 1.25091 1.84126 1.21508 0.90666 1.19415 1.25944 0.91556 1.25078 0.99104 0.94948 0.94182 1.69649 1.19952 1.31004 1.32720 0.86398 0.80878 0.79876 0.79728 1.20427 1.20991 1.19713 1.22932 0.77057 1.01701 0.98268 1.19845 0.93593 0.95008 0.97586 1.20922 1.00742 0.93692 1.02708 1.20902 0.93351 0.97598 1.02456 0.91103 0.91577 0.91559 0.86070 0.85724 0.90935 0.91198 0.77233 0.92696 0.92054 0.90566 0.90607 0.76503 0.91966 0.91896 0.91798 0.90913 0.91456 0.90512 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.08 -0.70 5.88 -104.62 -0.62 -1.31 16 3 C -0.13 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.09 -0.93 9.67 -39.58 -0.38 -1.32 16 5 C -0.11 -1.24 5.25 -104.62 -0.55 -1.79 16 6 C 0.18 2.44 4.93 -5.20 -0.03 2.41 16 7 N -0.75 -11.40 4.83 -66.41 -0.32 -11.72 16 8 C 0.71 14.56 8.49 -86.92 -0.74 13.83 16 9 O -0.60 -14.51 16.67 5.29 0.09 -14.42 16 10 N -0.63 -13.14 3.33 -176.00 -0.59 -13.73 16 11 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 12 C -0.12 -2.30 6.23 -24.59 -0.15 -2.45 16 13 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 14 O -0.59 -14.74 13.08 -35.23 -0.46 -15.20 16 15 C -0.54 -14.05 8.11 -34.44 -0.28 -14.33 16 16 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 17 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 18 N -0.89 -23.93 10.96 55.43 0.61 -23.32 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.12 3.01 5.39 -2.90 -0.02 2.99 16 24 C -0.06 -0.63 5.88 -104.63 -0.62 -1.24 16 25 C -0.12 -1.22 9.26 36.00 0.33 -0.89 16 26 C -0.13 -1.17 9.36 -39.59 -0.37 -1.54 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.12 1.15 8.04 -52.48 -0.42 0.73 16 32 H 0.07 1.01 7.30 -51.92 -0.38 0.63 16 33 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 34 H 0.39 5.29 6.94 -40.82 -0.28 5.01 16 35 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 36 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.38 9.95 7.24 45.56 0.33 10.28 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.06 1.69 8.00 -51.93 -0.42 1.27 16 42 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.08 0.90 6.33 -51.93 -0.33 0.57 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -30.36 374.60 -10.12 -40.48 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.46 Total: 14.83 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.62 Total: 1.91 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.30 Total: -48.77 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.37 Total: -29.61 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.36 -10.12 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591922456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds