Wall clock time and date at job start Tue Mar 31 2020 12:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99871 * 2 1 4 4 C 1.38215 * 120.00234 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99570 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47609 * 260.00123 * 6 5 4 8 8 C 1.34770 * 120.00278 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00020 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.47419 * 125.64850 * 359.97438 * 10 8 7 12 12 C 1.54905 * 104.83258 * 155.91019 * 11 10 8 13 13 C 1.55153 * 101.58432 * 37.00633 * 12 11 10 14 14 O 1.42899 * 110.72123 * 83.04292 * 13 12 11 15 15 C 1.50702 * 110.72079 * 206.13591 * 13 12 11 16 16 H 1.08002 * 120.00299 * 357.56389 * 15 13 12 17 17 C 1.37884 * 119.99942 * 177.27948 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47319 * 125.61416 * 180.20438 * 10 8 7 24 24 C 1.38211 * 120.00125 * 0.28186 * 5 4 3 25 25 C 1.50697 * 119.99632 * 179.72559 * 24 5 4 26 26 C 1.38214 * 120.00435 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47028 * 90.00078 * 1 2 3 28 28 H 1.08995 * 109.47024 * 210.00192 * 1 2 3 29 29 H 1.08999 * 109.47412 * 330.00128 * 1 2 3 30 30 H 1.07997 * 120.00023 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00433 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46891 * 140.00390 * 6 5 4 33 33 H 1.09003 * 109.47464 * 20.00882 * 6 5 4 34 34 H 0.97003 * 119.99773 * 0.02562 * 7 6 5 35 35 H 1.08994 * 110.36742 * 37.06455 * 11 10 8 36 36 H 1.09008 * 110.36374 * 274.74316 * 11 10 8 37 37 H 1.09004 * 111.00291 * 278.93328 * 12 11 10 38 38 H 1.09005 * 111.00807 * 155.08431 * 12 11 10 39 39 H 0.96699 * 114.00083 * 182.43988 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.06766 * 61.67566 * 23 10 8 42 42 H 1.08999 * 109.85130 * 300.41923 * 23 10 8 43 43 H 1.09004 * 109.47517 * 90.00017 * 25 24 5 44 44 H 1.09002 * 109.46627 * 209.99334 * 25 24 5 45 45 H 1.09001 * 109.47673 * 329.99282 * 25 24 5 46 46 H 1.07996 * 119.99496 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0016 7 7 6.2671 -0.2408 -1.3584 8 6 7.5921 -0.2832 -1.6009 9 8 8.3822 -0.1219 -0.6909 10 7 8.0415 -0.5054 -2.8520 11 6 7.1985 -0.7182 -4.0425 12 6 8.0926 -0.3096 -5.2397 13 6 9.4831 -0.8208 -4.7788 14 8 9.6318 -2.2121 -5.0688 15 6 10.5858 -0.0226 -5.4254 16 1 10.3449 0.7543 -6.1360 17 6 11.9020 -0.2801 -5.1054 18 7 12.1953 -1.2261 -4.2402 19 14 13.2684 0.7145 -5.9011 20 1 13.5595 1.9097 -5.0693 21 1 14.4904 -0.1221 -6.0102 22 1 12.8416 1.1465 -7.2562 23 6 9.4566 -0.5806 -3.2546 24 6 3.5806 -1.1969 -0.0037 25 6 4.3342 -2.5019 -0.0088 26 6 2.1981 -1.1969 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1328 0.0001 32 1 6.1420 -0.7866 0.6629 33 1 6.1420 0.9661 0.3524 34 1 5.6368 -0.3692 -2.0844 35 1 6.3120 -0.0855 -3.9977 36 1 6.9132 -1.7672 -4.1228 37 1 8.0982 0.7724 -5.3717 38 1 7.7750 -0.8114 -6.1538 39 1 10.4694 -2.5894 -4.7669 40 1 13.1214 -1.4075 -4.0153 41 1 9.9484 -1.4064 -2.7405 42 1 9.9589 0.3575 -3.0185 43 1 4.5155 -2.8209 1.0176 44 1 3.7453 -3.2594 -0.5261 45 1 5.2869 -2.3694 -0.5217 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591922456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:46 Heat of formation + Delta-G solvation = -81.666931 kcal Electronic energy + Delta-G solvation = -26681.926274 eV Core-core repulsion = 22956.039299 eV Total energy + Delta-G solvation = -3725.886975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41476 -40.54121 -39.11516 -36.31536 -36.07838 -34.19904 -34.04190 -33.01910 -31.68708 -29.75918 -29.07795 -28.05571 -26.94190 -25.27502 -24.05219 -23.04472 -21.46605 -21.16939 -20.95572 -19.30169 -18.91966 -17.56992 -17.13590 -16.94701 -16.66526 -16.50901 -16.12786 -15.70613 -15.36573 -15.07581 -14.85748 -14.76868 -14.59515 -14.14713 -14.04243 -13.99363 -13.74181 -13.56093 -13.47464 -13.29943 -13.12557 -12.85293 -12.80973 -12.55002 -12.46146 -12.31769 -12.28759 -12.09526 -11.86343 -11.83945 -11.36450 -11.18278 -10.65030 -10.30792 -10.26983 -9.68475 -9.44843 -9.41344 -8.26429 -6.42041 0.24600 0.46638 1.41263 1.43312 1.53044 1.71340 2.12098 2.37955 2.74476 3.00339 3.16065 3.65249 3.79776 3.83425 4.00234 4.04570 4.07609 4.17054 4.24622 4.37048 4.41696 4.56921 4.61620 4.64939 4.67109 4.71689 4.74463 4.86428 4.87374 4.93195 5.03958 5.07545 5.12423 5.22125 5.26587 5.33653 5.35580 5.42127 5.48229 5.51575 5.68632 5.70863 5.75284 6.01974 6.09539 6.15221 6.64566 7.03305 7.28736 7.36521 7.53522 8.79854 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026751 B = 0.002628 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.436907 B =10651.452097 C =10711.944130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.098 4.098 5 C -0.125 4.125 6 C 0.186 3.814 7 N -0.722 5.722 8 C 0.711 3.289 9 O -0.643 6.643 10 N -0.635 5.635 11 C 0.109 3.891 12 C -0.110 4.110 13 C 0.233 3.767 14 O -0.587 6.587 15 C -0.556 4.556 16 H 0.068 0.932 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.280 1.280 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.141 3.859 24 C -0.067 4.067 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.377 0.623 40 H 0.270 0.730 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.092 1.486 6.490 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.117 4.117 5 C -0.125 4.125 6 C 0.063 3.937 7 N -0.379 5.379 8 C 0.413 3.587 9 O -0.526 6.526 10 N -0.372 5.372 11 C -0.013 4.013 12 C -0.148 4.148 13 C 0.193 3.807 14 O -0.396 6.396 15 C -0.595 4.595 16 H 0.086 0.914 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.789 3.211 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.017 3.983 24 C -0.068 4.068 25 C -0.178 4.178 26 C -0.148 4.148 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.001 1.602 7.055 25.068 hybrid contribution 1.858 0.254 -0.097 1.877 sum -22.143 1.857 6.958 23.285 Atomic orbital electron populations 1.20858 0.89237 1.03762 1.03205 1.20315 0.97553 0.92824 0.97195 1.21266 0.93607 0.98702 1.01639 1.21238 0.94913 0.97351 0.98178 1.19617 0.93307 0.94013 1.05571 1.19915 0.90050 1.01324 0.82458 1.45006 1.03688 1.77836 1.11411 1.15725 0.83165 0.78128 0.81679 1.90849 1.56593 1.60478 1.44679 1.47960 1.08903 1.73996 1.06311 1.22376 0.93871 1.01306 0.83769 1.22716 0.93250 1.01125 0.97670 1.19704 0.93471 0.79990 0.87534 1.86075 1.43667 1.25757 1.84072 1.21846 0.91656 1.19806 1.26156 0.91393 1.25835 1.01299 0.95876 0.94647 1.69758 1.20222 1.32054 1.33556 0.85461 0.78239 0.78332 0.79045 1.20572 1.20685 1.18831 1.22432 0.78955 0.98369 0.98584 1.19943 0.94330 0.94694 0.97815 1.20891 0.99856 0.94146 1.02893 1.21141 0.92838 0.98775 1.02045 0.90239 0.90632 0.90523 0.84060 0.85253 0.91937 0.91900 0.75734 0.88453 0.91121 0.89847 0.89068 0.77372 0.92046 0.95394 0.95178 0.90549 0.89919 0.92682 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.23 0.71 -0.30 16 2 C -0.08 -1.15 5.88 -19.87 -0.12 -1.26 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.10 -1.84 9.67 22.27 0.22 -1.62 16 5 C -0.12 -2.66 5.25 -19.87 -0.10 -2.76 16 6 C 0.19 4.98 4.93 85.63 0.42 5.40 16 7 N -0.72 -21.65 4.83 -482.29 -2.33 -23.98 16 8 C 0.71 29.38 8.49 179.05 1.52 30.90 16 9 O -0.64 -32.51 16.67 -3.99 -0.07 -32.57 16 10 N -0.63 -26.62 3.33 -829.01 -2.76 -29.38 16 11 C 0.11 3.60 6.57 86.85 0.57 4.17 16 12 C -0.11 -4.18 6.23 31.98 0.20 -3.99 16 13 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 14 O -0.59 -29.96 13.08 -148.98 -1.95 -31.91 16 15 C -0.56 -29.40 8.11 25.60 0.21 -29.19 16 16 H 0.07 3.48 7.77 -2.91 -0.02 3.46 16 17 C 0.02 1.28 5.27 84.66 0.45 1.73 16 18 N -0.92 -50.54 10.96 21.45 0.24 -50.30 16 19 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 23 C 0.14 7.16 5.39 86.67 0.47 7.63 16 24 C -0.07 -1.30 5.88 -19.87 -0.12 -1.42 16 25 C -0.12 -2.26 9.26 71.24 0.66 -1.60 16 26 C -0.13 -2.08 9.36 22.27 0.21 -1.87 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.13 2.21 8.04 -2.91 -0.02 2.19 16 32 H 0.06 1.80 7.30 -2.38 -0.02 1.78 16 33 H 0.06 1.77 8.00 -2.39 -0.02 1.75 16 34 H 0.41 10.16 6.94 -92.71 -0.64 9.52 16 35 H 0.10 2.43 7.30 -2.39 -0.02 2.41 16 36 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.08 3.05 8.03 -2.38 -0.02 3.03 16 38 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 39 H 0.38 20.18 7.24 -74.06 -0.54 19.65 16 40 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 41 H 0.03 1.58 8.00 -2.39 -0.02 1.56 16 42 H 0.03 1.69 7.81 -2.39 -0.02 1.68 16 43 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 45 H 0.05 1.26 6.33 -2.39 -0.02 1.25 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -67.76 374.60 0.47 -67.28 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.18 Total: 41.00 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.50 Total: 15.36 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.85 Total: -103.66 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -2.01 Total: -64.49 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.76 0.47 -67.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591922456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.382 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds