Wall clock time and date at job start Tue Mar 31 2020 12:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 119.99361 * 2 1 4 4 C 1.38217 * 119.99593 * 179.72232 * 3 2 1 5 5 C 1.38258 * 120.00149 * 359.95672 * 4 3 2 6 6 C 1.50692 * 120.00370 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47340 * 260.00144 * 6 5 4 8 8 C 1.34775 * 120.00055 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00005 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00389 * 180.02562 * 8 7 6 11 11 C 1.47021 * 125.64516 * 359.68686 * 10 8 7 12 12 C 1.54334 * 107.26602 * 178.85113 * 11 10 8 13 13 C 1.55154 * 103.02365 * 338.14554 * 12 11 10 14 14 O 1.42901 * 111.00231 * 277.23354 * 13 12 11 15 15 C 1.50696 * 111.04130 * 153.39111 * 13 12 11 16 16 H 1.07991 * 120.00274 * 272.61456 * 15 13 12 17 17 C 1.37875 * 119.99584 * 92.60618 * 15 13 12 18 18 N 1.31524 * 119.99804 * 173.52280 * 17 15 13 19 19 Si 1.86794 * 120.00436 * 353.52606 * 17 15 13 20 20 H 1.48495 * 109.47404 * 87.31807 * 19 17 15 21 21 H 1.48502 * 109.47343 * 207.32015 * 19 17 15 22 22 H 1.48499 * 109.47186 * 327.31609 * 19 17 15 23 23 C 1.47426 * 125.65098 * 180.02562 * 10 8 7 24 24 C 1.38221 * 119.99965 * 359.97438 * 5 4 3 25 25 C 1.50693 * 119.99873 * 180.02562 * 24 5 4 26 26 C 1.38212 * 120.00272 * 179.72286 * 2 1 3 27 27 H 1.09001 * 109.47041 * 90.00208 * 1 2 3 28 28 H 1.08999 * 109.46849 * 209.99898 * 1 2 3 29 29 H 1.08998 * 109.47350 * 329.99968 * 1 2 3 30 30 H 1.07993 * 119.99977 * 359.69819 * 3 2 1 31 31 H 1.07995 * 119.99733 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.46815 * 19.99936 * 6 5 4 33 33 H 1.09001 * 109.47094 * 139.99365 * 6 5 4 34 34 H 0.96998 * 119.99776 * 359.97438 * 7 6 5 35 35 H 1.08997 * 109.88917 * 298.40154 * 11 10 8 36 36 H 1.09008 * 109.88087 * 59.56603 * 11 10 8 37 37 H 1.09004 * 110.85311 * 219.67096 * 12 11 10 38 38 H 1.09003 * 110.51231 * 96.45866 * 12 11 10 39 39 H 0.96694 * 113.99999 * 168.39995 * 14 13 12 40 40 H 0.96994 * 119.99719 * 180.02562 * 18 17 15 41 41 H 1.08995 * 110.36881 * 322.92839 * 23 10 8 42 42 H 1.09004 * 110.36289 * 85.14402 * 23 10 8 43 43 H 1.08994 * 109.47212 * 90.00070 * 25 24 5 44 44 H 1.09001 * 109.47171 * 210.00376 * 25 24 5 45 45 H 1.08999 * 109.47436 * 330.00175 * 25 24 5 46 46 H 1.07997 * 119.99857 * 0.28396 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 0.0058 5 6 4.2717 0.0002 0.0125 6 6 5.7786 0.0002 0.0194 7 7 6.2732 -0.2436 -1.3378 8 6 7.5994 -0.2865 -1.5742 9 8 8.3853 -0.1224 -0.6610 10 7 8.0545 -0.5103 -2.8229 11 6 7.2192 -0.7296 -4.0127 12 6 8.1714 -0.9123 -5.2135 13 6 9.4790 -0.2315 -4.7296 14 8 9.4234 1.1827 -4.9269 15 6 10.6830 -0.8229 -5.4162 16 1 11.1667 -1.6951 -5.0020 17 6 11.1670 -0.2505 -6.5734 18 7 12.2896 -0.6858 -7.1027 19 14 10.2286 1.1434 -7.3893 20 1 10.6527 2.4381 -6.7988 21 1 10.5148 1.1465 -8.8465 22 1 8.7719 0.9535 -7.1715 23 6 9.4722 -0.5827 -3.2206 24 6 3.5807 -1.1968 0.0139 25 6 4.3342 -2.5018 0.0218 26 6 2.1981 -1.1969 0.0058 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1326 -0.0049 31 1 4.1202 2.1328 0.0054 32 1 6.1403 0.9670 0.3697 33 1 6.1389 -0.7850 0.6841 34 1 5.6462 -0.3741 -2.0663 35 1 6.6116 -1.6246 -3.8794 36 1 6.5772 0.1354 -4.1795 37 1 7.7803 -0.4108 -6.0987 38 1 8.3383 -1.9712 -5.4110 39 1 10.1318 1.6697 -4.4843 40 1 12.6302 -0.2828 -7.9165 41 1 10.0612 0.1428 -2.6596 42 1 9.8598 -1.5891 -3.0617 43 1 4.5116 -2.8127 1.0513 44 1 3.7474 -3.2634 -0.4918 45 1 5.2888 -2.3733 -0.4884 46 1 1.6582 -2.1322 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591922465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:51 Heat of formation + Delta-G solvation = -57.060957 kcal Electronic energy + Delta-G solvation = -26707.850269 eV Core-core repulsion = 22983.030289 eV Total energy + Delta-G solvation = -3724.819980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30876 -39.59222 -37.78705 -35.32710 -34.70386 -33.20464 -32.37620 -32.28486 -30.35317 -28.66475 -28.07177 -27.39540 -25.42595 -24.15521 -22.49920 -22.35719 -20.41847 -19.86939 -19.71470 -18.00786 -17.39283 -16.32209 -16.19584 -15.67511 -15.46075 -15.08749 -15.05268 -14.69090 -14.35029 -14.06521 -13.92701 -13.59259 -13.42647 -13.40719 -13.02135 -12.87296 -12.67465 -12.43568 -12.32116 -12.27790 -11.94169 -11.83872 -11.62058 -11.54124 -11.20961 -11.15437 -11.01985 -10.49934 -10.38358 -10.20293 -9.87797 -9.23668 -9.03571 -8.99958 -8.77325 -8.65871 -8.52151 -7.98861 -6.19136 -4.31104 0.94703 1.12129 2.93325 3.45926 3.49772 3.52016 3.52419 3.69244 4.33603 4.42482 4.47027 4.49962 4.62012 4.67737 4.91641 5.01853 5.04089 5.14878 5.21326 5.23885 5.33933 5.36168 5.40973 5.45102 5.53376 5.57951 5.60194 5.64576 5.78908 5.85829 5.88772 5.96857 6.09718 6.16439 6.29635 6.39827 6.49693 6.53916 6.57980 6.66688 6.72839 6.73970 7.05577 7.34500 7.48925 8.12811 8.29069 8.62676 8.81922 8.89706 9.42405 10.89707 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.002793 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.226938 B =10022.380988 C =10396.632634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.091 4.091 5 C -0.113 4.113 6 C 0.183 3.817 7 N -0.744 5.744 8 C 0.719 3.281 9 O -0.598 6.598 10 N -0.628 5.628 11 C 0.102 3.898 12 C -0.119 4.119 13 C 0.219 3.781 14 O -0.559 6.559 15 C -0.551 4.551 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.888 5.888 19 Si 0.952 3.048 20 H -0.293 1.293 21 H -0.327 1.327 22 H -0.270 1.270 23 C 0.108 3.892 24 C -0.060 4.060 25 C -0.123 4.123 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.371 0.629 40 H 0.267 0.733 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.746 0.312 12.986 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.059 3.941 7 N -0.401 5.401 8 C 0.421 3.579 9 O -0.478 6.478 10 N -0.365 5.365 11 C -0.022 4.022 12 C -0.158 4.158 13 C 0.179 3.821 14 O -0.367 6.367 15 C -0.589 4.589 16 H 0.100 0.900 17 C -0.131 4.131 18 N -0.523 5.523 19 Si 0.788 3.212 20 H -0.221 1.221 21 H -0.259 1.259 22 H -0.196 1.196 23 C -0.014 4.014 24 C -0.061 4.061 25 C -0.180 4.180 26 C -0.143 4.143 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.219 0.781 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.550 0.269 13.281 26.172 hybrid contribution -0.274 0.788 -0.509 0.977 sum -22.824 1.057 12.772 26.176 Atomic orbital electron populations 1.20808 0.91198 1.02766 1.02431 1.19956 0.96067 0.93186 0.98611 1.21007 0.94063 0.97573 1.02155 1.21104 0.94161 0.97565 0.98112 1.19793 0.94970 0.93025 1.03551 1.19913 0.88271 1.02208 0.83733 1.45148 1.05497 1.79082 1.10391 1.15460 0.82075 0.78189 0.82189 1.90893 1.55304 1.58629 1.42924 1.47703 1.09148 1.74178 1.05426 1.22046 0.94391 0.99262 0.86470 1.22946 0.95039 1.01815 0.95970 1.20255 0.94118 0.78431 0.89324 1.86105 1.55244 1.20703 1.74632 1.21103 1.11802 1.15909 1.10055 0.90041 1.25118 0.94249 0.97310 0.96415 1.69973 1.19404 1.42205 1.20697 0.85633 0.80551 0.80807 0.74247 1.22083 1.25855 1.19605 1.22991 0.79201 1.01730 0.97492 1.19837 0.93615 0.94957 0.97663 1.20912 1.00635 0.93734 1.02712 1.20908 0.93346 0.97628 1.02426 0.91061 0.91538 0.91507 0.86012 0.85716 0.91109 0.90844 0.77054 0.92798 0.92541 0.90214 0.89638 0.78066 0.92412 0.91216 0.91233 0.90886 0.91428 0.90652 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.08 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.13 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.09 -0.87 9.67 -39.58 -0.38 -1.25 16 5 C -0.11 -1.16 5.25 -104.62 -0.55 -1.71 16 6 C 0.18 2.20 4.93 -5.20 -0.03 2.18 16 7 N -0.74 -10.21 4.85 -66.42 -0.32 -10.53 16 8 C 0.72 12.95 8.49 -86.92 -0.74 12.21 16 9 O -0.60 -12.86 16.60 5.28 0.09 -12.78 16 10 N -0.63 -11.40 3.33 -176.21 -0.59 -11.99 16 11 C 0.10 1.63 6.15 -3.06 -0.02 1.61 16 12 C -0.12 -2.29 5.90 -24.89 -0.15 -2.43 16 13 C 0.22 4.78 0.70 -89.61 -0.06 4.72 16 14 O -0.56 -12.13 8.52 -35.23 -0.30 -12.43 16 15 C -0.55 -14.41 8.89 -34.44 -0.31 -14.72 16 16 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 17 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 19 Si 0.95 23.21 24.93 -169.99 -4.24 18.97 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.33 -8.20 7.11 56.52 0.40 -7.80 16 22 H -0.27 -6.41 5.42 56.52 0.31 -6.10 16 23 C 0.11 2.21 6.07 -2.51 -0.02 2.20 16 24 C -0.06 -0.58 5.88 -104.63 -0.62 -1.19 16 25 C -0.12 -1.08 9.26 36.00 0.33 -0.74 16 26 C -0.13 -1.08 9.36 -39.58 -0.37 -1.45 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.12 1.07 8.04 -52.49 -0.42 0.65 16 32 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 33 H 0.07 0.91 7.28 -51.93 -0.38 0.54 16 34 H 0.40 4.84 7.45 -40.82 -0.30 4.53 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 38 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 39 H 0.37 7.28 8.99 45.56 0.41 7.69 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 42 H 0.07 1.45 7.99 -51.93 -0.41 1.03 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.50 8.08 -51.93 -0.42 0.09 16 45 H 0.07 0.77 6.35 -51.93 -0.33 0.44 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -32.35 369.44 -9.13 -41.48 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.48 Total: 8.80 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.63 Total: -1.73 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.13 Total: -47.88 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.21 Total: -25.21 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.24 Total: 18.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -9.13 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591922465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.583 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds