Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 120.00463 * 2 1 4 4 C 1.38232 * 120.00511 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00352 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47384 * 19.99748 * 6 5 4 8 8 C 1.53005 * 109.46795 * 260.00095 * 6 5 4 9 9 N 1.46496 * 109.47467 * 140.00334 * 6 5 4 10 10 C 1.34772 * 119.99823 * 205.00133 * 9 6 5 11 11 O 1.21588 * 120.00599 * 359.97438 * 10 9 6 12 12 N 1.34787 * 119.99718 * 179.97438 * 10 9 6 13 13 C 1.47416 * 125.64874 * 0.02562 * 12 10 9 14 14 C 1.54915 * 104.83222 * 155.83799 * 13 12 10 15 15 C 1.55150 * 101.58155 * 37.00692 * 14 13 12 16 16 O 1.42902 * 110.72125 * 83.04251 * 15 14 13 17 17 C 1.50702 * 110.71940 * 206.13740 * 15 14 13 18 18 H 1.07995 * 119.99831 * 356.76549 * 17 15 14 19 19 C 1.37880 * 119.99776 * 176.49168 * 17 15 14 20 20 N 1.31518 * 119.99950 * 354.18565 * 19 17 15 21 21 Si 1.86802 * 119.99793 * 174.18124 * 19 17 15 22 22 H 1.48503 * 109.46825 * 94.99217 * 21 19 17 23 23 H 1.48502 * 109.46898 * 214.98837 * 21 19 17 24 24 H 1.48497 * 109.47244 * 334.99396 * 21 19 17 25 25 C 1.47317 * 125.61487 * 180.16328 * 12 10 9 26 26 C 1.38237 * 119.99767 * 0.25636 * 5 4 3 27 27 C 1.38236 * 120.00315 * 359.48835 * 26 5 4 28 28 H 1.09000 * 109.46655 * 89.99984 * 1 2 3 29 29 H 1.08993 * 109.47424 * 209.99887 * 1 2 3 30 30 H 1.08999 * 109.47082 * 330.00886 * 1 2 3 31 31 H 1.08006 * 120.00159 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00390 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46936 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47201 * 299.99312 * 8 6 5 35 35 H 1.08999 * 109.47300 * 60.00361 * 8 6 5 36 36 H 0.97003 * 120.00142 * 24.99324 * 9 6 5 37 37 H 1.09003 * 110.36999 * 37.00041 * 13 12 10 38 38 H 1.09002 * 110.37030 * 274.67227 * 13 12 10 39 39 H 1.09004 * 111.00121 * 278.93593 * 14 13 12 40 40 H 1.09001 * 111.00417 * 155.08680 * 14 13 12 41 41 H 0.96697 * 113.99890 * 182.44319 * 16 15 14 42 42 H 0.96998 * 119.99682 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.06326 * 61.74939 * 25 12 10 44 44 H 1.09005 * 109.85312 * 300.49581 * 25 12 10 45 45 H 1.08001 * 120.00241 * 179.73147 * 26 5 4 46 46 H 1.07998 * 120.00834 * 180.25402 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 1 6.1421 0.9654 0.3519 8 6 6.2886 -0.2507 -1.4201 9 7 6.2670 -1.0583 0.8883 10 6 7.4890 -0.9578 1.4478 11 8 8.1863 0.0107 1.2155 12 7 7.9380 -1.9311 2.2650 13 6 7.2008 -3.1542 2.6304 14 6 8.2972 -4.1754 3.0243 15 6 9.3280 -3.2644 3.7416 16 8 8.9542 -3.0535 5.1047 17 6 10.7120 -3.8547 3.6556 18 1 10.8605 -4.8168 3.1882 19 6 11.7892 -3.1638 4.1688 20 7 11.6282 -1.9425 4.6295 21 14 13.4774 -3.9625 4.2096 22 1 14.2449 -3.5594 3.0039 23 1 14.2034 -3.5232 5.4283 24 1 13.3259 -5.4396 4.2290 25 6 9.2460 -1.9466 2.9428 26 6 3.5805 -1.1972 -0.0054 27 6 2.1982 -1.1973 -0.0006 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 0.0010 33 1 7.3787 -0.2503 -1.4202 34 1 5.9253 -1.2164 -1.7716 35 1 5.9254 0.5366 -2.0807 36 1 5.7108 -1.8312 1.0734 37 1 6.6289 -3.5215 1.7782 38 1 6.5410 -2.9611 3.4763 39 1 8.7345 -4.6395 2.1402 40 1 7.9022 -4.9298 3.7047 41 1 9.5458 -2.4603 5.5875 42 1 12.3860 -1.4567 4.9908 43 1 9.3260 -1.0967 3.6204 44 1 10.0464 -1.9107 2.2037 45 1 4.1204 -2.1326 -0.0097 46 1 1.6581 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591924356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -58.800242 kcal Electronic energy + Delta-G solvation = -26770.223616 eV Core-core repulsion = 23045.328215 eV Total energy + Delta-G solvation = -3724.895401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.18031 -39.27206 -37.49207 -35.55149 -34.25180 -32.52786 -32.21766 -31.12873 -30.57352 -29.39289 -27.68751 -26.89977 -25.06412 -23.19925 -23.09977 -22.23169 -20.58405 -19.59910 -19.41044 -17.81018 -17.09331 -16.42202 -15.79938 -15.47763 -15.29368 -14.96105 -14.77979 -14.35513 -14.18725 -13.99427 -13.66749 -13.59063 -13.36154 -12.93111 -12.84982 -12.78375 -12.49285 -12.32767 -12.04107 -11.96362 -11.68911 -11.59028 -11.39654 -11.16490 -11.03867 -10.88128 -10.76613 -10.64388 -10.49616 -10.16773 -9.58381 -9.27176 -9.11140 -8.90285 -8.69883 -8.66591 -8.29502 -7.73127 -6.26536 -4.35146 1.10485 1.21619 3.12401 3.22370 3.30032 3.33464 3.56973 3.77856 4.27877 4.47126 4.48449 4.60307 4.71215 4.81988 5.00418 5.03661 5.24126 5.30102 5.32313 5.37071 5.39187 5.48805 5.52807 5.68069 5.70180 5.78104 5.82461 5.88116 5.95058 6.02190 6.11810 6.17848 6.27100 6.38463 6.40937 6.52608 6.73684 6.80562 6.83588 6.92719 7.02296 7.31074 7.33754 7.67437 7.74728 8.04545 8.55823 8.68704 9.15961 9.30193 9.36961 10.80591 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.002716 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.924847 B =10306.892276 C =10738.133906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.104 4.104 5 C -0.090 4.090 6 C 0.202 3.798 7 H 0.095 0.905 8 C -0.157 4.157 9 N -0.747 5.747 10 C 0.716 3.284 11 O -0.596 6.596 12 N -0.631 5.631 13 C 0.103 3.897 14 C -0.115 4.115 15 C 0.247 3.753 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.109 4.109 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.381 0.619 42 H 0.270 0.730 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 2.366 -9.636 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.090 4.090 6 C 0.096 3.904 7 H 0.113 0.887 8 C -0.216 4.216 9 N -0.404 5.404 10 C 0.418 3.582 11 O -0.475 6.475 12 N -0.368 5.368 13 C -0.020 4.020 14 C -0.153 4.153 15 C 0.206 3.794 16 O -0.393 6.393 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.197 1.197 25 C 0.003 3.997 26 C -0.127 4.127 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.249 2.892 -9.915 21.845 hybrid contribution 1.149 -0.313 0.256 1.218 sum -18.100 2.579 -9.659 20.677 Atomic orbital electron populations 1.20786 0.91279 1.02773 1.02222 1.19936 0.96048 0.93268 0.99872 1.21004 0.93997 0.97555 1.01041 1.21012 0.94143 0.97540 0.99550 1.20011 0.95031 0.93666 1.00340 1.19537 0.88141 0.92531 0.90170 0.88741 1.22185 1.02453 1.01671 0.95253 1.45294 1.17726 1.25183 1.52209 1.15506 0.81294 0.82613 0.78740 1.90879 1.57412 1.32413 1.66789 1.48069 1.20427 1.20176 1.48144 1.22222 0.95511 0.85907 0.98362 1.22716 0.95595 0.96891 1.00115 1.19509 0.91722 0.88549 0.79581 1.86108 1.56883 1.71329 1.24961 1.21491 0.91102 1.05380 1.39688 0.91550 1.25083 0.99653 0.94453 0.94144 1.69769 1.32357 1.09968 1.40877 0.86407 0.83179 0.79712 0.77720 1.20544 1.20927 1.19666 1.22918 0.80239 1.01019 0.95498 1.20929 0.94171 0.97582 1.00021 1.21003 0.93984 0.97581 1.00938 0.91259 0.91558 0.91595 0.86023 0.85705 0.91313 0.92580 0.91860 0.77357 0.92787 0.92070 0.90527 0.90623 0.76922 0.92044 0.91810 0.91673 0.86133 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.10 -1.08 9.67 -39.58 -0.38 -1.46 16 5 C -0.09 -1.02 4.95 -104.63 -0.52 -1.54 16 6 C 0.20 2.72 2.77 -69.08 -0.19 2.53 16 7 H 0.09 1.43 7.44 -51.93 -0.39 1.05 16 8 C -0.16 -1.94 9.46 37.16 0.35 -1.59 16 9 N -0.75 -11.52 4.99 -59.82 -0.30 -11.81 16 10 C 0.72 14.69 8.46 -86.91 -0.73 13.96 16 11 O -0.60 -14.44 16.33 5.29 0.09 -14.35 16 12 N -0.63 -13.25 3.33 -176.00 -0.59 -13.83 16 13 C 0.10 1.82 6.57 -2.53 -0.02 1.80 16 14 C -0.12 -2.28 6.23 -24.58 -0.15 -2.43 16 15 C 0.25 5.96 0.85 -89.94 -0.08 5.89 16 16 O -0.58 -14.61 13.08 -35.23 -0.46 -15.07 16 17 C -0.54 -14.06 8.11 -34.44 -0.28 -14.34 16 18 H 0.07 1.70 7.78 -52.49 -0.41 1.30 16 19 C 0.07 1.84 5.25 -17.82 -0.09 1.74 16 20 N -0.89 -23.89 10.98 55.43 0.61 -23.28 16 21 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.13 3.09 5.22 -2.90 -0.02 3.07 16 26 C -0.11 -1.12 9.05 -39.58 -0.36 -1.48 16 27 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 32 H 0.12 1.15 8.04 -52.48 -0.42 0.72 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.39 5.18 5.36 -40.82 -0.22 4.96 16 37 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.38 9.76 7.53 45.56 0.34 10.10 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.73 7.90 -51.93 -0.41 1.32 16 44 H 0.06 1.76 7.81 -51.93 -0.41 1.36 16 45 H 0.12 1.12 6.93 -52.49 -0.36 0.75 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -30.54 375.04 -9.94 -40.48 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -6.43 Total: 15.34 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.49 Total: 1.41 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.28 Total: -48.92 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.37 Total: -29.43 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.54 -9.94 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591924356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.321 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds