Wall clock time and date at job start Tue Mar 31 2020 12:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 120.00463 * 2 1 4 4 C 1.38232 * 120.00511 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00352 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47384 * 19.99748 * 6 5 4 8 8 C 1.53005 * 109.46795 * 260.00095 * 6 5 4 9 9 N 1.46496 * 109.47467 * 140.00334 * 6 5 4 10 10 C 1.34772 * 119.99823 * 205.00133 * 9 6 5 11 11 O 1.21588 * 120.00599 * 359.97438 * 10 9 6 12 12 N 1.34787 * 119.99718 * 179.97438 * 10 9 6 13 13 C 1.47416 * 125.64874 * 0.02562 * 12 10 9 14 14 C 1.54915 * 104.83222 * 155.83799 * 13 12 10 15 15 C 1.55150 * 101.58155 * 37.00692 * 14 13 12 16 16 O 1.42902 * 110.72125 * 83.04251 * 15 14 13 17 17 C 1.50702 * 110.71940 * 206.13740 * 15 14 13 18 18 H 1.07995 * 119.99831 * 356.76549 * 17 15 14 19 19 C 1.37880 * 119.99776 * 176.49168 * 17 15 14 20 20 N 1.31518 * 119.99950 * 354.18565 * 19 17 15 21 21 Si 1.86802 * 119.99793 * 174.18124 * 19 17 15 22 22 H 1.48503 * 109.46825 * 94.99217 * 21 19 17 23 23 H 1.48502 * 109.46898 * 214.98837 * 21 19 17 24 24 H 1.48497 * 109.47244 * 334.99396 * 21 19 17 25 25 C 1.47317 * 125.61487 * 180.16328 * 12 10 9 26 26 C 1.38237 * 119.99767 * 0.25636 * 5 4 3 27 27 C 1.38236 * 120.00315 * 359.48835 * 26 5 4 28 28 H 1.09000 * 109.46655 * 89.99984 * 1 2 3 29 29 H 1.08993 * 109.47424 * 209.99887 * 1 2 3 30 30 H 1.08999 * 109.47082 * 330.00886 * 1 2 3 31 31 H 1.08006 * 120.00159 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00390 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46936 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47201 * 299.99312 * 8 6 5 35 35 H 1.08999 * 109.47300 * 60.00361 * 8 6 5 36 36 H 0.97003 * 120.00142 * 24.99324 * 9 6 5 37 37 H 1.09003 * 110.36999 * 37.00041 * 13 12 10 38 38 H 1.09002 * 110.37030 * 274.67227 * 13 12 10 39 39 H 1.09004 * 111.00121 * 278.93593 * 14 13 12 40 40 H 1.09001 * 111.00417 * 155.08680 * 14 13 12 41 41 H 0.96697 * 113.99890 * 182.44319 * 16 15 14 42 42 H 0.96998 * 119.99682 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.06326 * 61.74939 * 25 12 10 44 44 H 1.09005 * 109.85312 * 300.49581 * 25 12 10 45 45 H 1.08001 * 120.00241 * 179.73147 * 26 5 4 46 46 H 1.07998 * 120.00834 * 180.25402 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 1 6.1421 0.9654 0.3519 8 6 6.2886 -0.2507 -1.4201 9 7 6.2670 -1.0583 0.8883 10 6 7.4890 -0.9578 1.4478 11 8 8.1863 0.0107 1.2155 12 7 7.9380 -1.9311 2.2650 13 6 7.2008 -3.1542 2.6304 14 6 8.2972 -4.1754 3.0243 15 6 9.3280 -3.2644 3.7416 16 8 8.9542 -3.0535 5.1047 17 6 10.7120 -3.8547 3.6556 18 1 10.8605 -4.8168 3.1882 19 6 11.7892 -3.1638 4.1688 20 7 11.6282 -1.9425 4.6295 21 14 13.4774 -3.9625 4.2096 22 1 14.2449 -3.5594 3.0039 23 1 14.2034 -3.5232 5.4283 24 1 13.3259 -5.4396 4.2290 25 6 9.2460 -1.9466 2.9428 26 6 3.5805 -1.1972 -0.0054 27 6 2.1982 -1.1973 -0.0006 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 0.0010 33 1 7.3787 -0.2503 -1.4202 34 1 5.9253 -1.2164 -1.7716 35 1 5.9254 0.5366 -2.0807 36 1 5.7108 -1.8312 1.0734 37 1 6.6289 -3.5215 1.7782 38 1 6.5410 -2.9611 3.4763 39 1 8.7345 -4.6395 2.1402 40 1 7.9022 -4.9298 3.7047 41 1 9.5458 -2.4603 5.5875 42 1 12.3860 -1.4567 4.9908 43 1 9.3260 -1.0967 3.6204 44 1 10.0464 -1.9107 2.2037 45 1 4.1204 -2.1326 -0.0097 46 1 1.6581 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591924356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:57 Heat of formation + Delta-G solvation = -78.417431 kcal Electronic energy + Delta-G solvation = -26771.074281 eV Core-core repulsion = 23045.328215 eV Total energy + Delta-G solvation = -3725.746066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48708 -40.39845 -39.14744 -36.77567 -36.08266 -34.23523 -33.54869 -31.93503 -31.84070 -30.77405 -29.48409 -27.62299 -26.94357 -24.59242 -23.92775 -23.36499 -21.59663 -21.31551 -20.88506 -19.35409 -18.96859 -17.66702 -17.16636 -16.88173 -16.66142 -16.20593 -16.02894 -15.92968 -15.29067 -15.14929 -14.78472 -14.70773 -14.68119 -14.36268 -14.27151 -13.96886 -13.78088 -13.54822 -13.27061 -13.16084 -12.99764 -12.84968 -12.70304 -12.55676 -12.44218 -12.31427 -12.28720 -12.09822 -11.90528 -11.74699 -11.31419 -11.13752 -10.69150 -10.30510 -10.28661 -9.83192 -9.47219 -9.39194 -8.25872 -6.41853 0.34472 0.49480 1.40795 1.43279 1.53731 1.66325 2.13444 2.38065 2.80885 3.00160 3.06638 3.57469 3.78977 3.90061 4.05708 4.09322 4.12226 4.16460 4.24533 4.30369 4.37169 4.53974 4.57013 4.57708 4.69674 4.73470 4.84428 4.87844 4.89330 4.95400 5.06735 5.12988 5.16719 5.19824 5.23819 5.30580 5.36777 5.42756 5.48607 5.51464 5.71294 5.71892 5.74529 6.02192 6.10100 6.16265 6.64947 7.04419 7.26695 7.32882 7.55316 8.79712 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.002716 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.924847 B =10306.892276 C =10738.133906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.105 4.105 6 C 0.202 3.798 7 H 0.070 0.930 8 C -0.150 4.150 9 N -0.724 5.724 10 C 0.712 3.288 11 O -0.642 6.642 12 N -0.637 5.637 13 C 0.107 3.893 14 C -0.109 4.109 15 C 0.232 3.768 16 O -0.586 6.586 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.281 1.281 23 H -0.281 1.281 24 H -0.264 1.264 25 C 0.144 3.856 26 C -0.115 4.115 27 C -0.122 4.122 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.374 0.626 42 H 0.269 0.731 43 H 0.027 0.973 44 H 0.029 0.971 45 H 0.131 0.869 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.033 0.779 -10.544 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.105 4.105 6 C 0.097 3.903 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.382 5.382 10 C 0.414 3.586 11 O -0.524 6.524 12 N -0.374 5.374 13 C -0.015 4.015 14 C -0.147 4.147 15 C 0.192 3.808 16 O -0.393 6.393 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.789 3.211 22 H -0.207 1.207 23 H -0.206 1.206 24 H -0.188 1.188 25 C 0.020 3.980 26 C -0.133 4.133 27 C -0.140 4.140 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.223 0.777 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.149 0.851 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.964 1.268 -10.841 24.527 hybrid contribution 1.882 0.235 0.511 1.964 sum -20.082 1.503 -10.330 22.633 Atomic orbital electron populations 1.20841 0.89355 1.03634 1.03151 1.20325 0.97567 0.93016 0.98415 1.21267 0.93535 0.98779 1.00591 1.21167 0.94980 0.97465 0.99817 1.19811 0.93268 0.94789 1.02672 1.19594 0.89941 0.90703 0.90046 0.91162 1.22111 1.00448 1.03267 0.94995 1.45134 1.15793 1.26013 1.51227 1.15721 0.82357 0.81877 0.78681 1.90842 1.59085 1.34232 1.68240 1.48005 1.19595 1.21639 1.48117 1.22397 0.94821 0.83678 1.00584 1.22712 0.94898 0.96966 1.00099 1.19717 0.92789 0.89043 0.79244 1.86099 1.56663 1.71068 1.25466 1.21832 0.92394 1.05533 1.39765 0.91366 1.25839 1.03058 0.94850 0.93919 1.69886 1.33121 1.10964 1.41405 0.85460 0.79057 0.79132 0.77483 1.20674 1.20645 1.18805 1.22401 0.81344 1.00182 0.94050 1.21082 0.94889 0.97392 0.99943 1.21296 0.93644 0.98722 1.00296 0.90182 0.90665 0.90850 0.84176 0.85446 0.94229 0.91060 0.89983 0.75663 0.88178 0.91251 0.89783 0.88983 0.77749 0.92157 0.95454 0.95267 0.85105 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.39 5.88 -19.86 -0.12 -1.51 16 3 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 4 C -0.12 -2.28 9.67 22.27 0.22 -2.06 16 5 C -0.10 -2.25 4.95 -19.87 -0.10 -2.35 16 6 C 0.20 5.40 2.77 44.25 0.12 5.52 16 7 H 0.07 2.22 7.44 -2.39 -0.02 2.21 16 8 C -0.15 -3.64 9.46 71.98 0.68 -2.95 16 9 N -0.72 -21.76 4.99 -461.42 -2.30 -24.06 16 10 C 0.71 29.63 8.46 179.05 1.51 31.14 16 11 O -0.64 -32.55 16.33 -3.99 -0.07 -32.62 16 12 N -0.64 -26.85 3.33 -828.99 -2.76 -29.61 16 13 C 0.11 3.52 6.57 86.86 0.57 4.09 16 14 C -0.11 -4.12 6.23 31.99 0.20 -3.92 16 15 C 0.23 11.34 0.85 -10.35 -0.01 11.33 16 16 O -0.59 -29.65 13.08 -148.98 -1.95 -31.59 16 17 C -0.56 -29.37 8.11 25.60 0.21 -29.17 16 18 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 19 C 0.02 1.29 5.25 84.65 0.44 1.73 16 20 N -0.91 -50.66 10.98 21.45 0.24 -50.42 16 21 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.14 7.39 5.22 86.67 0.45 7.84 16 26 C -0.11 -2.08 9.05 22.27 0.20 -1.88 16 27 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 31 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.13 2.31 8.04 -2.91 -0.02 2.29 16 33 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.41 9.78 5.36 -92.71 -0.50 9.28 16 37 H 0.10 2.40 7.30 -2.39 -0.02 2.38 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 3.04 8.04 -2.38 -0.02 3.02 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.37 19.81 7.53 -74.06 -0.56 19.26 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.03 1.56 7.90 -2.39 -0.02 1.54 16 44 H 0.03 1.66 7.81 -2.38 -0.02 1.65 16 45 H 0.13 2.00 6.93 -2.91 -0.02 1.98 16 46 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -68.95 375.04 0.65 -68.30 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.06 Total: 41.56 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.53 Total: 14.01 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -4.83 Total: -104.10 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: -2.01 Total: -64.21 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.95 0.65 -68.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591924356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.115 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds