Wall clock time and date at job start Tue Mar 31 2020 12:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00170 * 2 1 4 4 C 1.38230 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00346 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00430 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47167 * 340.00739 * 6 5 4 8 8 C 1.53001 * 109.46996 * 100.00069 * 6 5 4 9 9 N 1.46499 * 109.47447 * 220.00380 * 6 5 4 10 10 C 1.34784 * 119.99971 * 154.99886 * 9 6 5 11 11 O 1.21583 * 119.99855 * 359.72712 * 10 9 6 12 12 N 1.34771 * 119.99547 * 179.97438 * 10 9 6 13 13 C 1.47017 * 125.65202 * 0.03119 * 12 10 9 14 14 C 1.54329 * 107.27261 * 181.02117 * 13 12 10 15 15 C 1.55158 * 102.93980 * 22.18990 * 14 13 12 16 16 O 1.42898 * 111.00449 * 82.57811 * 15 14 13 17 17 C 1.50704 * 110.99856 * 206.38882 * 15 14 13 18 18 H 1.07998 * 120.00823 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99558 * 179.97438 * 17 15 14 20 20 N 1.31517 * 120.00234 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99999 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46878 * 90.00254 * 21 19 17 23 23 H 1.48500 * 109.46908 * 210.00147 * 21 19 17 24 24 H 1.48499 * 109.46852 * 330.00159 * 21 19 17 25 25 C 1.47432 * 125.64315 * 179.71364 * 12 10 9 26 26 C 1.38237 * 119.99726 * 0.25644 * 5 4 3 27 27 C 1.38234 * 119.99867 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47673 * 89.99119 * 1 2 3 29 29 H 1.09001 * 109.47498 * 209.99876 * 1 2 3 30 30 H 1.09008 * 109.47180 * 329.99425 * 1 2 3 31 31 H 1.08006 * 119.99752 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.99699 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.46954 * 60.00572 * 8 6 5 34 34 H 1.09005 * 109.47307 * 180.02562 * 8 6 5 35 35 H 1.09000 * 109.47576 * 299.99781 * 8 6 5 36 36 H 0.96999 * 119.99984 * 334.99734 * 9 6 5 37 37 H 1.09000 * 109.88113 * 300.43560 * 13 12 10 38 38 H 1.08992 * 109.88575 * 61.59956 * 13 12 10 39 39 H 1.09003 * 110.72231 * 140.55370 * 14 13 12 40 40 H 1.09001 * 110.71485 * 263.65073 * 14 13 12 41 41 H 0.96700 * 113.99691 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00242 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.37009 * 274.75108 * 25 12 10 44 44 H 1.09000 * 110.36695 * 37.08094 * 25 12 10 45 45 H 1.07997 * 119.99967 * 179.72621 * 26 5 4 46 46 H 1.08001 * 119.99818 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7786 -0.0001 0.0005 7 1 6.1420 0.9657 -0.3508 8 6 6.2886 -0.2506 1.4211 9 7 6.2670 -1.0581 -0.8873 10 6 7.4890 -0.9576 -1.4469 11 8 8.1841 0.0136 -1.2188 12 7 7.9384 -1.9312 -2.2633 13 6 7.2032 -3.1510 -2.6279 14 6 8.1176 -3.9767 -3.5572 15 6 9.5343 -3.4469 -3.2109 16 8 10.0503 -4.0897 -2.0436 17 6 10.4739 -3.6157 -4.3770 18 1 10.1201 -4.0588 -5.2961 19 6 11.7856 -3.2044 -4.2703 20 7 12.2168 -2.6653 -3.1509 21 14 12.9507 -3.4142 -5.7154 22 1 12.9004 -2.2020 -6.5718 23 1 14.3342 -3.6074 -5.2117 24 1 12.5435 -4.5999 -6.5114 25 6 9.2462 -1.9462 -2.9439 26 6 3.5805 -1.1971 -0.0054 27 6 2.1981 -1.1972 -0.0005 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5140 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0010 33 1 5.9253 -1.2163 1.7725 34 1 7.3786 -0.2503 1.4213 35 1 5.9254 0.5366 2.0818 36 1 5.7108 -1.8310 -1.0725 37 1 6.9702 -3.7253 -1.7313 38 1 6.2840 -2.8874 -3.1510 39 1 8.0377 -5.0401 -3.3316 40 1 7.8769 -3.7867 -4.6032 41 1 10.9339 -3.7912 -1.7884 42 1 13.1397 -2.3762 -3.0758 43 1 9.1917 -1.3950 -3.8826 44 1 10.0148 -1.5220 -2.2979 45 1 4.1204 -2.1324 -0.0098 46 1 1.6581 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591924358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:00 Heat of formation + Delta-G solvation = -59.320694 kcal Electronic energy + Delta-G solvation = -26793.262832 eV Core-core repulsion = 23068.344863 eV Total energy + Delta-G solvation = -3724.917969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17415 -39.26867 -37.45131 -35.53274 -34.22409 -32.52472 -32.12822 -31.12866 -30.60528 -29.41228 -27.72679 -26.89473 -25.06786 -23.19447 -23.09538 -22.18583 -20.55583 -19.59759 -19.40078 -17.81393 -17.10744 -16.43738 -15.78360 -15.37789 -15.14540 -15.09226 -14.80463 -14.38713 -14.13397 -14.05402 -13.70765 -13.59001 -13.36495 -13.01214 -12.85719 -12.74602 -12.49807 -12.19219 -12.02702 -11.95048 -11.63929 -11.59164 -11.39498 -11.16847 -11.03455 -10.85420 -10.77167 -10.56996 -10.48550 -10.16282 -9.60117 -9.37406 -9.11223 -8.89489 -8.66874 -8.65610 -8.34693 -7.65402 -6.27439 -4.36946 1.10514 1.21560 3.13461 3.22119 3.29137 3.31863 3.56864 3.78860 4.26346 4.48694 4.50461 4.60278 4.71435 4.82170 4.99582 5.03291 5.24635 5.30073 5.33542 5.38902 5.43490 5.49079 5.52780 5.66986 5.70344 5.80102 5.83306 5.88423 5.96317 6.04813 6.13236 6.19159 6.29696 6.38315 6.41492 6.52939 6.72798 6.80453 6.84846 6.89657 6.99409 7.25359 7.34923 7.66290 7.76274 8.02419 8.56277 8.67407 9.16663 9.32801 9.48476 10.79777 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.002699 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.636766 B =10372.408066 C =10753.714474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.104 4.104 5 C -0.090 4.090 6 C 0.202 3.798 7 H 0.094 0.906 8 C -0.157 4.157 9 N -0.746 5.746 10 C 0.718 3.282 11 O -0.597 6.597 12 N -0.627 5.627 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.109 4.109 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.299 3.740 6.680 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.090 4.090 6 C 0.096 3.904 7 H 0.112 0.888 8 C -0.216 4.216 9 N -0.403 5.403 10 C 0.420 3.580 11 O -0.476 6.476 12 N -0.363 5.363 13 C -0.018 4.018 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.127 4.127 27 C -0.135 4.135 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.188 4.285 6.950 21.777 hybrid contribution 0.914 -0.137 -0.806 1.227 sum -19.274 4.149 6.144 20.651 Atomic orbital electron populations 1.20787 0.91286 1.02674 1.02307 1.19934 0.96039 0.93270 0.99901 1.21002 0.93997 0.97542 1.01081 1.21007 0.94137 0.97530 0.99590 1.20016 0.95048 0.93654 1.00304 1.19538 0.88110 0.92490 0.90230 0.88757 1.22185 1.02526 1.01684 0.95210 1.45280 1.17707 1.25181 1.52161 1.15502 0.81233 0.82657 0.78630 1.90874 1.57477 1.32348 1.66893 1.47889 1.20435 1.19914 1.48099 1.21917 0.94977 0.86552 0.98352 1.22597 0.95605 0.99096 0.98122 1.19625 0.89081 0.85768 0.84669 1.86056 1.38579 1.67794 1.46985 1.21497 0.94982 1.41676 0.99415 0.91493 1.25089 0.98322 0.93453 0.96406 1.69571 1.17498 1.40681 1.25582 0.86389 0.79774 0.78650 0.82007 1.20409 1.20987 1.19701 1.23197 0.81221 1.01320 0.95300 1.20940 0.94172 0.97623 0.99965 1.21002 0.93984 0.97579 1.00940 0.91205 0.91592 0.91631 0.86033 0.85715 0.92547 0.91263 0.91876 0.77371 0.92723 0.93248 0.90800 0.90511 0.76181 0.91874 0.92511 0.90091 0.86092 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 4 C -0.10 -1.08 9.67 -39.59 -0.38 -1.46 16 5 C -0.09 -1.03 4.96 -104.63 -0.52 -1.55 16 6 C 0.20 2.76 2.78 -69.08 -0.19 2.56 16 7 H 0.09 1.43 7.43 -51.93 -0.39 1.05 16 8 C -0.16 -2.02 9.46 37.16 0.35 -1.67 16 9 N -0.75 -11.67 4.99 -59.81 -0.30 -11.97 16 10 C 0.72 14.82 8.45 -86.92 -0.73 14.09 16 11 O -0.60 -14.50 16.26 5.29 0.09 -14.42 16 12 N -0.63 -13.19 3.32 -176.10 -0.59 -13.77 16 13 C 0.11 1.86 6.15 -3.06 -0.02 1.84 16 14 C -0.12 -2.30 6.12 -24.89 -0.15 -2.45 16 15 C 0.25 6.06 0.89 -89.50 -0.08 5.98 16 16 O -0.58 -15.08 13.19 -35.23 -0.46 -15.55 16 17 C -0.54 -13.95 8.25 -34.44 -0.28 -14.23 16 18 H 0.07 1.69 7.77 -52.49 -0.41 1.29 16 19 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 20 N -0.89 -23.96 10.72 55.43 0.59 -23.37 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 C 0.11 2.73 5.64 -2.40 -0.01 2.71 16 26 C -0.11 -1.13 9.06 -39.58 -0.36 -1.49 16 27 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.12 1.14 8.04 -52.48 -0.42 0.72 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 5.29 5.84 -40.82 -0.24 5.05 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 41 H 0.39 10.36 6.93 45.56 0.32 10.68 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 45 H 0.12 1.15 6.90 -52.49 -0.36 0.79 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -30.45 375.57 -10.04 -40.49 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -6.51 Total: 16.24 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -3.50 Total: 1.34 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.29 Total: -49.11 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.38 Total: -29.96 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.45 -10.04 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591924358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.830 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds