Wall clock time and date at job start Tue Mar 31 2020 12:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00170 * 2 1 4 4 C 1.38230 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00346 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00430 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47167 * 340.00739 * 6 5 4 8 8 C 1.53001 * 109.46996 * 100.00069 * 6 5 4 9 9 N 1.46499 * 109.47447 * 220.00380 * 6 5 4 10 10 C 1.34784 * 119.99971 * 154.99886 * 9 6 5 11 11 O 1.21583 * 119.99855 * 359.72712 * 10 9 6 12 12 N 1.34771 * 119.99547 * 179.97438 * 10 9 6 13 13 C 1.47017 * 125.65202 * 0.03119 * 12 10 9 14 14 C 1.54329 * 107.27261 * 181.02117 * 13 12 10 15 15 C 1.55158 * 102.93980 * 22.18990 * 14 13 12 16 16 O 1.42898 * 111.00449 * 82.57811 * 15 14 13 17 17 C 1.50704 * 110.99856 * 206.38882 * 15 14 13 18 18 H 1.07998 * 120.00823 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99558 * 179.97438 * 17 15 14 20 20 N 1.31517 * 120.00234 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99999 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46878 * 90.00254 * 21 19 17 23 23 H 1.48500 * 109.46908 * 210.00147 * 21 19 17 24 24 H 1.48499 * 109.46852 * 330.00159 * 21 19 17 25 25 C 1.47432 * 125.64315 * 179.71364 * 12 10 9 26 26 C 1.38237 * 119.99726 * 0.25644 * 5 4 3 27 27 C 1.38234 * 119.99867 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47673 * 89.99119 * 1 2 3 29 29 H 1.09001 * 109.47498 * 209.99876 * 1 2 3 30 30 H 1.09008 * 109.47180 * 329.99425 * 1 2 3 31 31 H 1.08006 * 119.99752 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.99699 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.46954 * 60.00572 * 8 6 5 34 34 H 1.09005 * 109.47307 * 180.02562 * 8 6 5 35 35 H 1.09000 * 109.47576 * 299.99781 * 8 6 5 36 36 H 0.96999 * 119.99984 * 334.99734 * 9 6 5 37 37 H 1.09000 * 109.88113 * 300.43560 * 13 12 10 38 38 H 1.08992 * 109.88575 * 61.59956 * 13 12 10 39 39 H 1.09003 * 110.72231 * 140.55370 * 14 13 12 40 40 H 1.09001 * 110.71485 * 263.65073 * 14 13 12 41 41 H 0.96700 * 113.99691 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00242 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.37009 * 274.75108 * 25 12 10 44 44 H 1.09000 * 110.36695 * 37.08094 * 25 12 10 45 45 H 1.07997 * 119.99967 * 179.72621 * 26 5 4 46 46 H 1.08001 * 119.99818 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7786 -0.0001 0.0005 7 1 6.1420 0.9657 -0.3508 8 6 6.2886 -0.2506 1.4211 9 7 6.2670 -1.0581 -0.8873 10 6 7.4890 -0.9576 -1.4469 11 8 8.1841 0.0136 -1.2188 12 7 7.9384 -1.9312 -2.2633 13 6 7.2032 -3.1510 -2.6279 14 6 8.1176 -3.9767 -3.5572 15 6 9.5343 -3.4469 -3.2109 16 8 10.0503 -4.0897 -2.0436 17 6 10.4739 -3.6157 -4.3770 18 1 10.1201 -4.0588 -5.2961 19 6 11.7856 -3.2044 -4.2703 20 7 12.2168 -2.6653 -3.1509 21 14 12.9507 -3.4142 -5.7154 22 1 12.9004 -2.2020 -6.5718 23 1 14.3342 -3.6074 -5.2117 24 1 12.5435 -4.5999 -6.5114 25 6 9.2462 -1.9462 -2.9439 26 6 3.5805 -1.1971 -0.0054 27 6 2.1981 -1.1972 -0.0005 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5140 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0010 33 1 5.9253 -1.2163 1.7725 34 1 7.3786 -0.2503 1.4213 35 1 5.9254 0.5366 2.0818 36 1 5.7108 -1.8310 -1.0725 37 1 6.9702 -3.7253 -1.7313 38 1 6.2840 -2.8874 -3.1510 39 1 8.0377 -5.0401 -3.3316 40 1 7.8769 -3.7867 -4.6032 41 1 10.9339 -3.7912 -1.7884 42 1 13.1397 -2.3762 -3.0758 43 1 9.1917 -1.3950 -3.8826 44 1 10.0148 -1.5220 -2.2979 45 1 4.1204 -2.1324 -0.0098 46 1 1.6581 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591924358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:59 Heat of formation + Delta-G solvation = -78.697619 kcal Electronic energy + Delta-G solvation = -26794.103078 eV Core-core repulsion = 23068.344863 eV Total energy + Delta-G solvation = -3725.758216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47774 -40.39613 -39.10197 -36.76698 -36.06923 -34.14739 -33.55152 -31.98744 -31.84476 -30.78093 -29.50748 -27.62801 -26.93476 -24.57489 -23.92545 -23.32991 -21.55765 -21.35626 -20.84517 -19.39715 -18.95079 -17.65819 -17.02712 -16.83007 -16.75981 -16.26595 -16.01609 -15.92940 -15.29508 -15.22779 -14.81276 -14.66283 -14.62870 -14.38388 -14.28425 -13.93318 -13.69669 -13.48118 -13.31649 -13.16881 -12.99442 -12.84036 -12.69454 -12.51342 -12.47664 -12.31413 -12.21082 -12.10080 -11.90978 -11.74983 -11.34458 -11.20851 -10.64846 -10.36230 -10.24090 -9.83434 -9.45580 -9.33017 -8.25240 -6.42250 0.34273 0.49238 1.42442 1.44379 1.54373 1.68144 2.14676 2.38421 2.80870 3.00826 3.09186 3.57374 3.80314 3.89857 4.09181 4.11132 4.12244 4.17784 4.24030 4.28747 4.34169 4.53622 4.57077 4.60305 4.68653 4.75920 4.83975 4.87881 4.88620 4.95028 5.04853 5.09275 5.16292 5.19048 5.27940 5.31770 5.37721 5.43625 5.45493 5.49891 5.71152 5.72126 5.77178 6.02445 6.09842 6.16575 6.65085 7.05111 7.30446 7.39631 7.56201 8.80415 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.002699 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.636766 B =10372.408066 C =10753.714474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.104 4.104 6 C 0.202 3.798 7 H 0.073 0.927 8 C -0.151 4.151 9 N -0.725 5.725 10 C 0.712 3.288 11 O -0.642 6.642 12 N -0.633 5.633 13 C 0.107 3.893 14 C -0.110 4.110 15 C 0.233 3.767 16 O -0.589 6.589 17 C -0.555 4.555 18 H 0.071 0.929 19 C 0.023 3.977 20 N -0.919 5.919 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.125 3.875 26 C -0.116 4.116 27 C -0.122 4.122 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.128 0.872 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.379 2.796 6.289 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.105 4.105 6 C 0.098 3.902 7 H 0.091 0.909 8 C -0.209 4.209 9 N -0.382 5.382 10 C 0.414 3.586 11 O -0.525 6.525 12 N -0.369 5.369 13 C -0.015 4.015 14 C -0.148 4.148 15 C 0.192 3.808 16 O -0.399 6.399 17 C -0.593 4.593 18 H 0.090 0.910 19 C -0.177 4.177 20 N -0.559 5.559 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.188 1.188 25 C 0.001 3.999 26 C -0.134 4.134 27 C -0.139 4.139 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.146 0.854 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.344 3.307 6.567 24.475 hybrid contribution 1.787 0.193 -0.649 1.911 sum -21.557 3.500 5.918 22.627 Atomic orbital electron populations 1.20843 0.89327 1.03752 1.03054 1.20322 0.97570 0.92986 0.98395 1.21273 0.93515 0.98777 1.00527 1.21163 0.94976 0.97416 0.99762 1.19797 0.93187 0.94790 1.02685 1.19588 0.90001 0.90766 0.89882 0.90923 1.22117 1.00354 1.03163 0.95307 1.45131 1.15853 1.26004 1.51210 1.15719 0.82272 0.81983 0.78657 1.90836 1.59117 1.34181 1.68344 1.47837 1.19667 1.21218 1.48183 1.22110 0.95309 0.84955 0.99140 1.22598 0.92736 1.00027 0.99434 1.19879 0.91304 0.85848 0.83742 1.86044 1.37994 1.68008 1.47811 1.21840 0.95682 1.41626 1.00126 0.91044 1.25868 0.99951 0.93200 0.98675 1.69692 1.17642 1.41327 1.27204 0.85425 0.77667 0.78681 0.79071 1.20309 1.20959 1.18785 1.22756 0.82042 1.01238 0.93844 1.21067 0.94926 0.97353 1.00039 1.21283 0.93577 0.98749 1.00327 0.90489 0.90552 0.90628 0.84075 0.85337 0.91349 0.94441 0.89847 0.75741 0.90956 0.89432 0.89585 0.89207 0.77259 0.92027 0.93992 0.94402 0.85393 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.23 0.71 -0.33 16 2 C -0.09 -1.38 5.88 -19.87 -0.12 -1.49 16 3 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 4 C -0.11 -2.23 9.67 22.27 0.22 -2.02 16 5 C -0.10 -2.25 4.96 -19.87 -0.10 -2.35 16 6 C 0.20 5.52 2.78 44.24 0.12 5.64 16 7 H 0.07 2.30 7.43 -2.38 -0.02 2.28 16 8 C -0.15 -3.88 9.46 71.98 0.68 -3.20 16 9 N -0.72 -22.28 4.99 -461.41 -2.30 -24.58 16 10 C 0.71 29.91 8.45 179.05 1.51 31.42 16 11 O -0.64 -32.72 16.26 -3.98 -0.06 -32.78 16 12 N -0.63 -26.68 3.32 -829.31 -2.76 -29.44 16 13 C 0.11 3.52 6.15 86.73 0.53 4.06 16 14 C -0.11 -4.16 6.12 31.79 0.19 -3.96 16 15 C 0.23 11.40 0.89 -10.07 -0.01 11.39 16 16 O -0.59 -30.99 13.19 -148.98 -1.97 -32.95 16 17 C -0.55 -28.93 8.25 25.60 0.21 -28.72 16 18 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 19 C 0.02 1.23 5.30 84.65 0.45 1.68 16 20 N -0.92 -50.85 10.72 21.45 0.23 -50.62 16 21 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.13 6.31 5.64 86.93 0.49 6.80 16 26 C -0.12 -2.15 9.06 22.27 0.20 -1.94 16 27 C -0.12 -1.89 9.70 22.27 0.22 -1.68 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.07 0.56 8.09 -2.38 -0.02 0.54 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.13 2.28 8.04 -2.91 -0.02 2.26 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.41 10.15 5.84 -92.71 -0.54 9.61 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 41 H 0.38 21.04 6.93 -74.06 -0.51 20.53 16 42 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.04 2.18 8.04 -2.39 -0.02 2.17 16 44 H 0.04 2.20 7.64 -2.39 -0.02 2.19 16 45 H 0.13 2.10 6.90 -2.91 -0.02 2.08 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -68.42 375.57 0.64 -67.79 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.07 Total: 45.00 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.53 Total: 13.55 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.83 Total: -104.64 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -2.03 Total: -65.73 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.42 0.64 -67.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591924358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.909 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds