Wall clock time and date at job start Tue Mar 31 2020 12:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38241 * 120.00059 * 180.36621 * 3 2 1 5 5 C 1.38234 * 119.99640 * 359.83734 * 4 3 2 6 6 C 1.50702 * 119.99464 * 180.11158 * 5 4 3 7 7 H 1.09001 * 109.46674 * 160.02058 * 6 5 4 8 8 C 1.53000 * 109.47221 * 280.02088 * 6 5 4 9 9 N 1.46499 * 109.47390 * 40.02745 * 6 5 4 10 10 C 1.34773 * 120.00380 * 154.99776 * 9 6 5 11 11 O 1.21587 * 119.99848 * 359.97438 * 10 9 6 12 12 N 1.34779 * 120.00118 * 179.97438 * 10 9 6 13 13 C 1.47015 * 125.64586 * 359.69232 * 12 10 9 14 14 C 1.54341 * 107.26491 * 178.84691 * 13 12 10 15 15 C 1.55158 * 103.01958 * 338.14354 * 14 13 12 16 16 O 1.42904 * 111.00118 * 277.23232 * 15 14 13 17 17 C 1.50698 * 111.03960 * 153.39483 * 15 14 13 18 18 H 1.08000 * 119.99615 * 6.32587 * 17 15 14 19 19 C 1.37872 * 120.00313 * 186.33050 * 17 15 14 20 20 N 1.31519 * 119.99872 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00191 * 179.97438 * 19 17 15 22 22 H 1.48488 * 109.46876 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46965 * 119.99947 * 21 19 17 24 24 H 1.48501 * 109.46843 * 239.99632 * 21 19 17 25 25 C 1.47420 * 125.64748 * 179.97438 * 12 10 9 26 26 C 1.38234 * 120.00264 * 0.13873 * 5 4 3 27 27 C 1.38230 * 119.99880 * 359.95214 * 26 5 4 28 28 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 29 29 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 30 30 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 31 31 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 32 32 H 1.07997 * 119.99852 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.46960 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.47353 * 300.00202 * 8 6 5 35 35 H 1.08998 * 109.46861 * 60.00569 * 8 6 5 36 36 H 0.97007 * 119.99625 * 334.99833 * 9 6 5 37 37 H 1.08993 * 109.88408 * 298.39119 * 13 12 10 38 38 H 1.09000 * 109.88837 * 59.56004 * 13 12 10 39 39 H 1.08991 * 110.85419 * 219.67079 * 14 13 12 40 40 H 1.09004 * 110.51013 * 96.44896 * 14 13 12 41 41 H 0.96703 * 113.99934 * 173.65325 * 16 15 14 42 42 H 0.96995 * 120.00132 * 180.02562 * 20 19 17 43 43 H 1.09004 * 110.37055 * 322.93325 * 25 12 10 44 44 H 1.09006 * 110.36708 * 85.14246 * 25 12 10 45 45 H 1.08001 * 119.99769 * 179.97438 * 26 5 4 46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0077 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0177 7 1 6.1434 -0.9661 0.3308 8 6 6.2832 0.2531 -1.4398 9 7 6.2704 1.0566 0.8701 10 6 7.4945 0.9552 1.4249 11 8 8.1906 -0.0134 1.1888 12 7 7.9471 1.9274 2.2413 13 6 7.2160 3.1499 2.6052 14 6 8.1107 3.9461 3.5786 15 6 9.0630 2.8603 4.1457 16 8 8.4454 2.1477 5.2196 17 6 10.3721 3.4643 4.5843 18 1 10.5018 4.5364 4.5758 19 6 11.4042 2.6483 4.9964 20 7 11.2464 1.3426 5.0062 21 14 13.0271 3.3970 5.5393 22 1 12.9495 4.8761 5.4344 23 1 13.3025 3.0139 6.9474 24 1 14.1197 2.8960 4.6673 25 6 9.2595 1.9439 2.9125 26 6 3.5805 -1.1971 -0.0114 27 6 2.1982 -1.1971 -0.0057 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6582 2.1325 0.0045 32 1 4.1205 2.1325 -0.0081 33 1 7.3733 0.2527 -1.4440 34 1 5.9174 -0.5330 -2.1003 35 1 5.9186 1.2194 -1.7882 36 1 5.7149 1.8292 1.0587 37 1 7.0172 3.7426 1.7124 38 1 6.2782 2.8890 3.0958 39 1 7.5160 4.3919 4.3758 40 1 8.6732 4.7102 3.0421 41 1 8.9624 1.3967 5.5419 42 1 11.9723 0.7685 5.2964 43 1 9.5371 0.9381 3.2277 44 1 10.0198 2.3562 2.2490 45 1 4.1206 -2.1324 -0.0151 46 1 1.6582 -2.1324 -0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591924359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:02 Heat of formation + Delta-G solvation = -78.815486 kcal Electronic energy + Delta-G solvation = -26828.943252 eV Core-core repulsion = 23103.179925 eV Total energy + Delta-G solvation = -3725.763327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47526 -40.39799 -39.11147 -36.75937 -36.03580 -34.22528 -33.54576 -31.97719 -31.84532 -30.77671 -29.46718 -27.62450 -26.93666 -24.57649 -23.92422 -23.33273 -21.56424 -21.36922 -20.84404 -19.36634 -18.91180 -17.62934 -17.03354 -16.90015 -16.75361 -16.24429 -16.03200 -15.92131 -15.28629 -15.23815 -14.81638 -14.69011 -14.61142 -14.38118 -14.28454 -13.88302 -13.72553 -13.51303 -13.26424 -13.15595 -12.99636 -12.86037 -12.68949 -12.56959 -12.42191 -12.33091 -12.19731 -12.08681 -11.90955 -11.74997 -11.32438 -11.18162 -10.66737 -10.32860 -10.25032 -9.83516 -9.45086 -9.33309 -8.23656 -6.40970 0.34268 0.49120 1.41092 1.44415 1.55387 1.68768 2.15393 2.38824 2.80867 3.02353 3.09694 3.57518 3.79926 3.89831 4.08179 4.09304 4.11861 4.18339 4.24650 4.30556 4.33913 4.53811 4.57132 4.60525 4.69788 4.77366 4.84239 4.87636 4.89235 4.95024 5.07438 5.10475 5.16519 5.19611 5.28320 5.31784 5.37326 5.43733 5.47291 5.49888 5.70925 5.71999 5.76837 6.05423 6.10029 6.18026 6.66819 7.05714 7.28057 7.35660 7.57042 8.81665 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002758 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.397522 B =10150.242266 C =10551.366467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.105 4.105 6 C 0.202 3.798 7 H 0.069 0.931 8 C -0.149 4.149 9 N -0.725 5.725 10 C 0.712 3.288 11 O -0.642 6.642 12 N -0.634 5.634 13 C 0.106 3.894 14 C -0.110 4.110 15 C 0.231 3.769 16 O -0.587 6.587 17 C -0.553 4.553 18 H 0.070 0.930 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.965 3.035 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.284 1.284 25 C 0.129 3.871 26 C -0.116 4.116 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.405 0.595 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.372 0.628 42 H 0.268 0.732 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.127 0.873 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.681 0.814 -11.892 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.106 4.106 6 C 0.097 3.903 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.382 5.382 10 C 0.414 3.586 11 O -0.525 6.525 12 N -0.370 5.370 13 C -0.016 4.016 14 C -0.147 4.147 15 C 0.191 3.809 16 O -0.395 6.395 17 C -0.591 4.591 18 H 0.088 0.912 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.210 1.210 25 C 0.005 3.995 26 C -0.135 4.135 27 C -0.142 4.142 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.145 0.855 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.603 0.365 -12.173 23.933 hybrid contribution 1.764 -0.286 0.651 1.902 sum -18.839 0.079 -11.522 22.084 Atomic orbital electron populations 1.20843 0.89324 1.03784 1.03014 1.20327 0.97587 0.93008 0.98421 1.21297 0.93642 0.98730 1.00297 1.21080 0.94895 0.97378 0.99958 1.19823 0.93334 0.94786 1.02636 1.19593 0.89892 0.90721 0.90113 0.91303 1.22101 1.00496 1.03254 0.94866 1.45126 1.15634 1.26104 1.51317 1.15714 0.82304 0.81875 0.78733 1.90840 1.59294 1.34166 1.68154 1.47869 1.19496 1.21441 1.48213 1.22119 0.95416 0.85049 0.98983 1.22591 0.97244 0.97006 0.97890 1.19882 0.90694 0.87825 0.82497 1.86094 1.51099 1.48191 1.54098 1.21815 0.97919 0.94077 1.45332 0.91195 1.25856 1.02295 0.95210 0.94324 1.69862 1.34392 1.03894 1.47350 0.85400 0.78876 0.79038 0.77665 1.18630 1.20641 1.20957 1.22652 0.81881 1.00761 0.94205 1.21168 0.95004 0.97467 0.99842 1.21268 0.93531 0.98796 1.00584 0.90598 0.90450 0.90624 0.83853 0.85112 0.94135 0.90010 0.91037 0.75739 0.89147 0.91178 0.89598 0.89178 0.77944 0.92251 0.93882 0.94274 0.85480 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 4 C -0.11 -2.14 9.06 22.27 0.20 -1.94 16 5 C -0.11 -2.32 4.95 -19.87 -0.10 -2.42 16 6 C 0.20 5.49 2.78 44.25 0.12 5.62 16 7 H 0.07 2.23 7.44 -2.39 -0.02 2.21 16 8 C -0.15 -3.61 9.46 71.98 0.68 -2.93 16 9 N -0.72 -22.18 4.99 -461.41 -2.30 -24.48 16 10 C 0.71 29.84 8.45 179.05 1.51 31.36 16 11 O -0.64 -32.72 16.26 -3.99 -0.06 -32.78 16 12 N -0.63 -26.65 3.33 -829.79 -2.76 -29.41 16 13 C 0.11 3.49 6.15 86.74 0.53 4.02 16 14 C -0.11 -4.12 6.13 31.79 0.19 -3.93 16 15 C 0.23 11.29 0.87 -10.15 -0.01 11.28 16 16 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 17 C -0.55 -28.92 8.27 25.60 0.21 -28.70 16 18 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 19 C 0.02 1.27 5.29 84.65 0.45 1.72 16 20 N -0.92 -50.87 10.69 21.45 0.23 -50.64 16 21 Si 0.96 42.19 29.54 68.60 2.03 44.21 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 C 0.13 6.49 5.38 86.85 0.47 6.96 16 26 C -0.12 -2.37 9.67 22.27 0.22 -2.15 16 27 C -0.12 -2.10 9.70 22.27 0.22 -1.88 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.13 2.07 6.92 -2.91 -0.02 2.05 16 33 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.41 10.07 5.86 -92.70 -0.54 9.53 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 41 H 0.37 20.44 7.57 -74.06 -0.56 19.88 16 42 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.04 2.51 7.33 -2.38 -0.02 2.49 16 44 H 0.04 2.06 8.03 -2.38 -0.02 2.04 16 45 H 0.13 2.40 8.04 -2.91 -0.02 2.38 16 46 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -68.76 375.62 0.57 -68.19 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -0.11 Total: 44.14 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.51 Total: 13.31 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.83 Total: -104.52 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -2.03 Total: -65.33 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.76 0.57 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591924359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.623 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds