Wall clock time and date at job start Tue Mar 31 2020 12:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 120.00091 * 2 1 4 4 C 1.38215 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99820 * 359.95309 * 5 4 3 7 7 C 1.50703 * 119.99617 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47051 * 90.00377 * 7 6 5 9 9 N 1.46498 * 109.47201 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00001 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99995 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99847 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.65138 * 0.02954 * 12 10 9 14 14 C 1.54908 * 104.92961 * 204.15299 * 13 12 10 15 15 C 1.55154 * 101.58289 * 322.93718 * 14 13 12 16 16 O 1.42898 * 110.72101 * 277.13570 * 15 14 13 17 17 C 1.50702 * 110.72191 * 154.04150 * 15 14 13 18 18 H 1.07999 * 119.99742 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00234 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99601 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00088 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46990 * 90.00324 * 21 19 17 23 23 H 1.48497 * 109.46721 * 210.00018 * 21 19 17 24 24 H 1.48495 * 109.47053 * 330.00374 * 21 19 17 25 25 C 1.47290 * 125.79121 * 180.02562 * 12 10 9 26 26 C 1.38210 * 119.99990 * 180.21914 * 2 1 3 27 27 H 1.08996 * 109.47170 * 89.99736 * 1 2 3 28 28 H 1.09004 * 109.46589 * 209.99855 * 1 2 3 29 29 H 1.09005 * 109.46672 * 329.99065 * 1 2 3 30 30 H 1.08004 * 119.99878 * 0.02562 * 3 2 1 31 31 H 1.07992 * 119.99972 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.00420 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47510 * 330.00617 * 7 6 5 34 34 H 1.09005 * 109.47273 * 210.00307 * 7 6 5 35 35 H 1.08998 * 109.46768 * 59.99785 * 8 7 6 36 36 H 1.08998 * 109.47144 * 299.99683 * 8 7 6 37 37 H 0.96998 * 119.99854 * 0.02562 * 9 8 7 38 38 H 1.09002 * 110.36696 * 85.25946 * 13 12 10 39 39 H 1.08995 * 110.36608 * 323.04783 * 13 12 10 40 40 H 1.09008 * 111.00494 * 81.01141 * 14 13 12 41 41 H 1.08999 * 111.00647 * 204.85975 * 14 13 12 42 42 H 0.96700 * 114.00520 * 179.97438 * 16 15 14 43 43 H 0.97001 * 119.99875 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.85762 * 59.50172 * 25 12 10 45 45 H 1.08995 * 110.00297 * 298.43119 * 25 12 10 46 46 H 1.08009 * 120.00370 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5806 -1.1970 -0.0012 7 6 4.3341 -2.5021 -0.0017 8 6 4.5901 -2.9438 1.4406 9 7 5.3221 -4.2128 1.4401 10 6 5.6601 -4.7963 2.6070 11 8 5.3572 -4.2696 3.6602 12 7 6.3340 -5.9634 2.6065 13 6 6.7630 -6.7074 1.4082 14 6 6.9040 -8.1763 1.8797 15 6 7.4729 -7.9907 3.3112 16 8 8.8889 -7.8028 3.2722 17 6 7.1170 -9.1673 4.1831 18 1 6.5390 -9.9845 3.7776 19 6 7.5293 -9.2005 5.4983 20 7 8.2328 -8.2050 5.9921 21 14 7.0876 -10.6586 6.5792 22 1 8.1519 -11.6894 6.4790 23 1 6.9642 -10.2099 7.9893 24 1 5.7957 -11.2355 6.1283 25 6 6.7654 -6.7096 3.8009 26 6 2.1981 -1.1969 -0.0046 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1327 0.0004 31 1 4.1204 2.1326 -0.0010 32 1 5.3517 -0.0001 -0.0024 33 1 5.2862 -2.3717 -0.5161 34 1 3.7447 -3.2617 -0.5153 35 1 3.6380 -3.0742 1.9550 36 1 5.1795 -2.1842 1.9541 37 1 5.5641 -4.6328 0.5999 38 1 7.7210 -6.3303 1.0503 39 1 6.0094 -6.6313 0.6245 40 1 5.9341 -8.6730 1.9060 41 1 7.6045 -8.7236 1.2488 42 1 9.2938 -7.6817 4.1419 43 1 8.5226 -8.2282 6.9176 44 1 5.8980 -6.9733 4.4061 45 1 7.4570 -6.1056 4.3882 46 1 1.6581 -2.1323 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591939968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:55 Heat of formation + Delta-G solvation = -85.150406 kcal Electronic energy + Delta-G solvation = -25964.416425 eV Core-core repulsion = 22238.378396 eV Total energy + Delta-G solvation = -3726.038030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28683 -40.36255 -39.16729 -36.58905 -36.09245 -34.17071 -34.14598 -32.92621 -31.68613 -29.83265 -29.23582 -27.72662 -26.90995 -24.79899 -23.84274 -22.86849 -21.56697 -21.43382 -20.80135 -19.26144 -18.84776 -17.51296 -17.33220 -17.03083 -16.87765 -16.45422 -16.17337 -15.77672 -15.47259 -15.35585 -14.76837 -14.70016 -14.55767 -14.55085 -14.06507 -13.86221 -13.72842 -13.49723 -13.41389 -13.26310 -13.07623 -12.85354 -12.55019 -12.45924 -12.40436 -12.29559 -12.27167 -12.08772 -11.90610 -11.78568 -11.33994 -11.19727 -10.63584 -10.30723 -10.26010 -9.69384 -9.48184 -9.40654 -8.26992 -6.42767 0.41808 0.49923 1.41254 1.43461 1.53127 1.65872 2.12385 2.37745 2.82384 2.99577 3.07405 3.81738 3.85567 3.90673 4.02725 4.07065 4.11942 4.19169 4.20917 4.28931 4.39371 4.49048 4.58024 4.60212 4.61556 4.71692 4.76241 4.83649 4.91443 4.98455 5.03466 5.04931 5.13979 5.21574 5.25068 5.32625 5.37543 5.46812 5.49232 5.59212 5.69677 5.72800 5.76071 6.01497 6.14092 6.18262 6.64121 7.05527 7.29219 7.38506 7.55164 8.79296 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.002226 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.664909 B =12577.746746 C =12864.255058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.088 4.088 7 C -0.077 4.077 8 C 0.149 3.851 9 N -0.728 5.728 10 C 0.709 3.291 11 O -0.647 6.647 12 N -0.635 5.635 13 C 0.107 3.893 14 C -0.111 4.111 15 C 0.233 3.767 16 O -0.589 6.589 17 C -0.556 4.556 18 H 0.069 0.931 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.137 3.863 26 C -0.128 4.128 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.378 0.622 43 H 0.271 0.729 44 H 0.030 0.970 45 H 0.024 0.976 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 14.439 -17.335 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.114 4.114 8 C 0.025 3.975 9 N -0.385 5.385 10 C 0.411 3.589 11 O -0.530 6.530 12 N -0.372 5.372 13 C -0.015 4.015 14 C -0.148 4.148 15 C 0.192 3.808 16 O -0.398 6.398 17 C -0.594 4.594 18 H 0.087 0.913 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.191 1.191 25 C 0.013 3.987 26 C -0.146 4.146 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.229 0.771 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.272 14.899 -17.076 25.310 hybrid contribution 0.291 -0.661 1.627 1.780 sum -10.982 14.238 -15.449 23.706 Atomic orbital electron populations 1.20834 0.89801 1.03366 1.03061 1.20250 0.97349 0.93150 0.99078 1.21341 0.94553 0.98226 1.01005 1.21417 0.94678 0.98609 0.99454 1.21307 1.00636 0.92263 1.00896 1.19779 0.93897 0.94792 1.00349 1.20691 1.01736 0.94705 0.94268 1.21126 0.95193 0.83372 0.97817 1.44911 1.61875 1.25383 1.06354 1.15763 0.78664 0.79971 0.84550 1.90850 1.62884 1.66443 1.32809 1.47930 1.57844 1.21477 1.09926 1.22418 1.00455 0.91506 0.87085 1.22730 1.01353 0.95466 0.95291 1.19712 0.78658 0.89260 0.93150 1.86054 1.22581 1.95281 1.35895 1.21866 1.35527 1.05667 0.96330 0.91254 1.25853 0.94041 0.98670 0.99184 1.69688 1.37574 1.32365 1.16197 0.85444 0.78931 0.79179 0.77434 1.19647 1.21213 1.19148 1.22453 0.96817 0.93411 0.85993 1.21183 0.93711 0.98437 1.01288 0.90177 0.91366 0.90721 0.84479 0.84345 0.85133 0.88625 0.88570 0.93188 0.93302 0.75127 0.91058 0.87761 0.89791 0.89021 0.77128 0.91983 0.95180 0.95731 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.10 -1.62 5.88 -19.87 -0.12 -1.74 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 5 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 6 C -0.09 -1.59 5.13 -19.86 -0.10 -1.69 16 7 C -0.08 -1.24 5.46 29.85 0.16 -1.07 16 8 C 0.15 3.71 5.66 86.38 0.49 4.20 16 9 N -0.73 -20.41 5.52 -478.54 -2.64 -23.04 16 10 C 0.71 29.02 8.49 179.06 1.52 30.54 16 11 O -0.65 -33.00 16.68 -3.98 -0.07 -33.07 16 12 N -0.63 -26.27 3.34 -829.08 -2.77 -29.03 16 13 C 0.11 3.40 6.56 86.85 0.57 3.97 16 14 C -0.11 -4.13 6.22 31.98 0.20 -3.93 16 15 C 0.23 11.34 0.86 -10.35 -0.01 11.33 16 16 O -0.59 -30.17 13.08 -148.98 -1.95 -32.12 16 17 C -0.56 -29.23 8.11 25.60 0.21 -29.02 16 18 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 19 C 0.02 1.21 5.28 84.65 0.45 1.66 16 20 N -0.92 -50.64 10.98 21.45 0.24 -50.41 16 21 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 C 0.14 6.99 5.56 86.68 0.48 7.47 16 26 C -0.13 -2.29 9.36 22.27 0.21 -2.08 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 29 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 30 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.10 1.25 8.08 -2.38 -0.02 1.23 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.41 8.47 6.95 -92.71 -0.64 7.83 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.10 2.33 7.29 -2.39 -0.02 2.31 16 40 H 0.08 2.99 8.03 -2.38 -0.02 2.97 16 41 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.38 20.47 6.98 -74.06 -0.52 19.95 16 43 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.03 1.68 7.82 -2.38 -0.02 1.66 16 45 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 46 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -70.61 378.98 0.09 -70.51 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.18 Total: 39.54 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.43 Total: 13.27 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -5.17 Total: -102.48 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -2.02 Total: -65.19 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -70.61 0.09 -70.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591939968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.638 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds