Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00100 * 2 1 4 4 C 1.38235 * 119.99745 * 180.34548 * 3 2 1 5 5 C 1.38229 * 120.00334 * 359.88429 * 4 3 2 6 6 C 1.50702 * 120.00110 * 180.11133 * 5 4 3 7 7 C 1.53001 * 109.47296 * 269.97738 * 6 5 4 8 8 N 1.46496 * 109.47139 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99803 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00356 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.47019 * 125.64906 * 0.03191 * 11 9 8 13 13 C 1.54323 * 107.27282 * 181.01988 * 12 11 9 14 14 C 1.55159 * 102.94193 * 22.18887 * 13 12 11 15 15 O 1.42892 * 111.00720 * 82.57214 * 14 13 12 16 16 C 1.50702 * 111.00449 * 206.39388 * 14 13 12 17 17 H 1.07993 * 120.00210 * 118.09184 * 16 14 13 18 18 C 1.37879 * 119.99330 * 298.08586 * 16 14 13 19 19 N 1.31517 * 119.99920 * 187.05153 * 18 16 14 20 20 Si 1.86800 * 120.00288 * 7.05675 * 18 16 14 21 21 H 1.48492 * 109.47412 * 84.71692 * 20 18 16 22 22 H 1.48499 * 109.46831 * 204.71725 * 20 18 16 23 23 H 1.48504 * 109.46864 * 324.71299 * 20 18 16 24 24 C 1.47425 * 125.64485 * 179.71029 * 11 9 8 25 25 C 1.38239 * 119.99747 * 0.09194 * 5 4 3 26 26 C 1.38226 * 120.00267 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47078 * 269.72884 * 1 2 3 28 28 H 1.08996 * 109.46886 * 29.72574 * 1 2 3 29 29 H 1.08991 * 109.47218 * 149.72491 * 1 2 3 30 30 H 1.07994 * 120.00134 * 0.27509 * 3 2 1 31 31 H 1.07997 * 119.99772 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47024 * 29.98086 * 6 5 4 33 33 H 1.09004 * 109.46828 * 149.97516 * 6 5 4 34 34 H 1.09004 * 109.46604 * 299.99959 * 7 6 5 35 35 H 1.09001 * 109.46771 * 59.99672 * 7 6 5 36 36 H 0.97005 * 120.00073 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.87877 * 300.42879 * 12 11 9 38 38 H 1.08997 * 109.88694 * 61.59907 * 12 11 9 39 39 H 1.08997 * 110.72205 * 140.54859 * 13 12 11 40 40 H 1.09004 * 110.71646 * 263.64899 * 13 12 11 41 41 H 0.96700 * 114.00191 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99937 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.37154 * 274.75108 * 24 11 9 44 44 H 1.08997 * 110.36499 * 37.08039 * 24 11 9 45 45 H 1.08005 * 119.99498 * 180.02562 * 25 5 4 46 46 H 1.08003 * 120.00427 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0072 5 6 4.2717 0.0000 -0.0120 6 6 5.7787 -0.0001 -0.0174 7 6 6.2836 0.0022 -1.4616 8 7 7.7486 0.0016 -1.4668 9 6 8.4183 0.0038 -2.6364 10 8 7.8067 0.0059 -3.6872 11 7 9.7661 0.0037 -2.6411 12 6 10.6272 0.0007 -1.4494 13 6 12.0898 0.0281 -1.9408 14 6 11.9648 0.6160 -3.3713 15 8 11.8942 2.0426 -3.3344 16 6 13.1033 0.1566 -4.2454 17 1 12.9029 -0.4344 -5.1268 18 6 14.4006 0.4913 -3.9199 19 7 15.3803 0.2117 -4.7517 20 14 14.7670 1.3417 -2.2976 21 1 14.9049 0.3238 -1.2252 22 1 16.0320 2.1103 -2.4162 23 1 13.6552 2.2671 -1.9617 24 6 10.6211 -0.0001 -3.8421 25 6 3.5804 -1.1972 -0.0115 26 6 2.1982 -1.1972 -0.0057 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3633 -0.8874 -0.5181 30 1 1.6583 2.1324 0.0045 31 1 4.1206 2.1323 -0.0068 32 1 6.1438 0.8890 0.4966 33 1 6.1438 -0.8909 0.4939 34 1 5.9184 -0.8870 -1.9755 35 1 5.9184 0.8930 -1.9728 36 1 8.2366 0.0003 -0.6284 37 1 10.4235 0.8831 -0.8427 38 1 10.4491 -0.9024 -0.8656 39 1 12.6968 0.6765 -1.3091 40 1 12.5058 -0.9791 -1.9698 41 1 11.8157 2.4552 -4.2054 42 1 16.2929 0.4474 -4.5229 43 1 10.7721 -1.0195 -4.1971 44 1 10.1769 0.6136 -4.6258 45 1 4.1205 -2.1325 -0.0149 46 1 1.6581 -2.1325 -0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591964620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = -52.402367 kcal Electronic energy + Delta-G solvation = -25921.918847 eV Core-core repulsion = 22197.300878 eV Total energy + Delta-G solvation = -3724.617968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02335 -39.64011 -37.76759 -35.63687 -34.48650 -33.48475 -32.43939 -31.20180 -30.72727 -29.78488 -28.30034 -26.54088 -24.98257 -23.06565 -23.00852 -22.39520 -20.94136 -19.96559 -19.62929 -17.91751 -17.24240 -16.41433 -16.09830 -15.84717 -15.48826 -15.28238 -14.92401 -14.77785 -14.42501 -14.23598 -14.00873 -13.69610 -13.43965 -13.32701 -12.99845 -12.90371 -12.70951 -12.59580 -12.48584 -12.09899 -11.79542 -11.63195 -11.57211 -11.36773 -11.28141 -11.14272 -11.09536 -10.60298 -10.37012 -10.07318 -9.78748 -9.20114 -9.05860 -8.98433 -8.79071 -8.77009 -8.55270 -7.95814 -6.24859 -4.36207 1.01822 1.13456 2.92067 3.25695 3.38465 3.46065 3.54338 3.54483 4.21439 4.37856 4.47933 4.53065 4.71489 4.74010 4.78650 4.86832 5.04632 5.09583 5.15197 5.18932 5.23428 5.31476 5.36525 5.40968 5.48566 5.53982 5.69234 5.71714 5.80288 5.83965 5.84123 5.91232 6.11727 6.13194 6.30954 6.35503 6.46374 6.56717 6.59814 6.63359 6.65232 6.73620 7.11415 7.33755 7.48792 8.16359 8.30737 8.72987 8.90804 8.92345 9.38322 10.85591 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038439 B = 0.002149 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.252073 B =13026.261954 C =13204.185992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.147 3.853 8 N -0.751 5.751 9 C 0.719 3.281 10 O -0.598 6.598 11 N -0.627 5.627 12 C 0.105 3.895 13 C -0.127 4.127 14 C 0.217 3.783 15 O -0.572 6.572 16 C -0.552 4.552 17 H 0.080 0.920 18 C 0.090 3.910 19 N -0.884 5.884 20 Si 0.876 3.124 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.232 1.232 24 C 0.112 3.888 25 C -0.109 4.109 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.394 0.606 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.367 0.633 42 H 0.267 0.733 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.695 -0.597 13.989 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.129 4.129 7 C 0.022 3.978 8 N -0.408 5.408 9 C 0.421 3.579 10 O -0.477 6.477 11 N -0.364 5.364 12 C -0.018 4.018 13 C -0.165 4.165 14 C 0.176 3.824 15 O -0.379 6.379 16 C -0.590 4.590 17 H 0.098 0.902 18 C -0.116 4.116 19 N -0.520 5.520 20 Si 0.704 3.296 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.156 1.156 24 C -0.010 4.010 25 C -0.127 4.127 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.214 0.786 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.012 -0.700 13.798 27.703 hybrid contribution 0.634 0.387 0.656 0.990 sum -23.378 -0.313 14.454 27.487 Atomic orbital electron populations 1.20792 0.91286 1.02813 1.02236 1.19946 0.96082 0.93288 0.99826 1.21026 0.94154 0.97549 1.01020 1.21077 0.94196 0.97679 0.99746 1.19654 0.94800 0.93366 1.00615 1.20788 0.91581 1.03703 0.96871 1.21071 0.78722 1.02537 0.95429 1.45098 1.06701 1.81586 1.07398 1.15435 0.80546 0.78036 0.83859 1.90888 1.67018 1.59047 1.30726 1.47690 1.02851 1.76486 1.09370 1.21977 0.92083 0.99783 0.87973 1.22975 0.93334 1.02250 0.97917 1.20126 0.91198 0.79130 0.91948 1.86423 1.96301 1.21027 1.34131 1.21141 0.89613 1.36630 1.11597 0.90203 1.24946 0.95910 0.93784 0.96957 1.69937 1.00404 1.45978 1.35712 0.87054 0.77984 0.80853 0.83702 1.20897 1.22670 1.15558 1.22919 0.90434 1.01364 0.86313 1.21071 0.94189 0.97653 0.99800 1.21022 0.94154 0.97541 1.01048 0.91260 0.91551 0.91551 0.86093 0.85894 0.90238 0.90254 0.91671 0.91669 0.77186 0.92372 0.92610 0.90802 0.89267 0.78555 0.92301 0.91202 0.91316 0.85910 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.74 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 4 C -0.11 -0.96 9.70 -39.59 -0.38 -1.34 16 5 C -0.08 -0.76 5.13 -104.62 -0.54 -1.29 16 6 C -0.09 -0.77 5.46 -27.88 -0.15 -0.92 16 7 C 0.15 1.73 5.66 -4.04 -0.02 1.71 16 8 N -0.75 -10.22 5.52 -65.23 -0.36 -10.58 16 9 C 0.72 13.31 8.49 -86.91 -0.74 12.57 16 10 O -0.60 -13.27 16.60 5.29 0.09 -13.19 16 11 N -0.63 -11.70 3.32 -176.10 -0.59 -12.28 16 12 C 0.11 1.72 6.15 -3.07 -0.02 1.70 16 13 C -0.13 -2.51 4.62 -24.90 -0.12 -2.62 16 14 C 0.22 4.80 0.71 -89.50 -0.06 4.74 16 15 O -0.57 -12.63 10.84 -35.23 -0.38 -13.01 16 16 C -0.55 -14.50 8.84 -34.44 -0.30 -14.80 16 17 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 18 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 19 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 20 Si 0.88 20.75 23.98 -169.99 -4.08 16.67 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.23 -5.40 5.43 56.52 0.31 -5.10 16 24 C 0.11 2.34 6.10 -2.40 -0.01 2.33 16 25 C -0.11 -0.95 9.70 -39.59 -0.38 -1.33 16 26 C -0.12 -0.98 9.70 -39.59 -0.38 -1.37 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.08 16 29 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.39 4.38 7.46 -40.82 -0.30 4.07 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.49 4.80 -51.93 -0.25 1.24 16 40 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 41 H 0.37 7.27 9.06 45.56 0.41 7.68 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 44 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -33.04 372.23 -9.32 -42.35 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.53 Total: 10.75 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.85 Total: -1.31 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.17 Total: -47.87 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.29 Total: -26.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.08 Total: 16.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.04 -9.32 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.049 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds