Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00100 * 2 1 4 4 C 1.38235 * 119.99745 * 180.34548 * 3 2 1 5 5 C 1.38229 * 120.00334 * 359.88429 * 4 3 2 6 6 C 1.50702 * 120.00110 * 180.11133 * 5 4 3 7 7 C 1.53001 * 109.47296 * 269.97738 * 6 5 4 8 8 N 1.46496 * 109.47139 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99803 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00356 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.47019 * 125.64906 * 0.03191 * 11 9 8 13 13 C 1.54323 * 107.27282 * 181.01988 * 12 11 9 14 14 C 1.55159 * 102.94193 * 22.18887 * 13 12 11 15 15 O 1.42892 * 111.00720 * 82.57214 * 14 13 12 16 16 C 1.50702 * 111.00449 * 206.39388 * 14 13 12 17 17 H 1.07993 * 120.00210 * 118.09184 * 16 14 13 18 18 C 1.37879 * 119.99330 * 298.08586 * 16 14 13 19 19 N 1.31517 * 119.99920 * 187.05153 * 18 16 14 20 20 Si 1.86800 * 120.00288 * 7.05675 * 18 16 14 21 21 H 1.48492 * 109.47412 * 84.71692 * 20 18 16 22 22 H 1.48499 * 109.46831 * 204.71725 * 20 18 16 23 23 H 1.48504 * 109.46864 * 324.71299 * 20 18 16 24 24 C 1.47425 * 125.64485 * 179.71029 * 11 9 8 25 25 C 1.38239 * 119.99747 * 0.09194 * 5 4 3 26 26 C 1.38226 * 120.00267 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47078 * 269.72884 * 1 2 3 28 28 H 1.08996 * 109.46886 * 29.72574 * 1 2 3 29 29 H 1.08991 * 109.47218 * 149.72491 * 1 2 3 30 30 H 1.07994 * 120.00134 * 0.27509 * 3 2 1 31 31 H 1.07997 * 119.99772 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47024 * 29.98086 * 6 5 4 33 33 H 1.09004 * 109.46828 * 149.97516 * 6 5 4 34 34 H 1.09004 * 109.46604 * 299.99959 * 7 6 5 35 35 H 1.09001 * 109.46771 * 59.99672 * 7 6 5 36 36 H 0.97005 * 120.00073 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.87877 * 300.42879 * 12 11 9 38 38 H 1.08997 * 109.88694 * 61.59907 * 12 11 9 39 39 H 1.08997 * 110.72205 * 140.54859 * 13 12 11 40 40 H 1.09004 * 110.71646 * 263.64899 * 13 12 11 41 41 H 0.96700 * 114.00191 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99937 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.37154 * 274.75108 * 24 11 9 44 44 H 1.08997 * 110.36499 * 37.08039 * 24 11 9 45 45 H 1.08005 * 119.99498 * 180.02562 * 25 5 4 46 46 H 1.08003 * 120.00427 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0072 5 6 4.2717 0.0000 -0.0120 6 6 5.7787 -0.0001 -0.0174 7 6 6.2836 0.0022 -1.4616 8 7 7.7486 0.0016 -1.4668 9 6 8.4183 0.0038 -2.6364 10 8 7.8067 0.0059 -3.6872 11 7 9.7661 0.0037 -2.6411 12 6 10.6272 0.0007 -1.4494 13 6 12.0898 0.0281 -1.9408 14 6 11.9648 0.6160 -3.3713 15 8 11.8942 2.0426 -3.3344 16 6 13.1033 0.1566 -4.2454 17 1 12.9029 -0.4344 -5.1268 18 6 14.4006 0.4913 -3.9199 19 7 15.3803 0.2117 -4.7517 20 14 14.7670 1.3417 -2.2976 21 1 14.9049 0.3238 -1.2252 22 1 16.0320 2.1103 -2.4162 23 1 13.6552 2.2671 -1.9617 24 6 10.6211 -0.0001 -3.8421 25 6 3.5804 -1.1972 -0.0115 26 6 2.1982 -1.1972 -0.0057 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3633 -0.8874 -0.5181 30 1 1.6583 2.1324 0.0045 31 1 4.1206 2.1323 -0.0068 32 1 6.1438 0.8890 0.4966 33 1 6.1438 -0.8909 0.4939 34 1 5.9184 -0.8870 -1.9755 35 1 5.9184 0.8930 -1.9728 36 1 8.2366 0.0003 -0.6284 37 1 10.4235 0.8831 -0.8427 38 1 10.4491 -0.9024 -0.8656 39 1 12.6968 0.6765 -1.3091 40 1 12.5058 -0.9791 -1.9698 41 1 11.8157 2.4552 -4.2054 42 1 16.2929 0.4474 -4.5229 43 1 10.7721 -1.0195 -4.1971 44 1 10.1769 0.6136 -4.6258 45 1 4.1205 -2.1325 -0.0149 46 1 1.6581 -2.1325 -0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591964620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = -75.686864 kcal Electronic energy + Delta-G solvation = -25922.928538 eV Core-core repulsion = 22197.300878 eV Total energy + Delta-G solvation = -3725.627660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36668 -40.36578 -39.32161 -36.65300 -36.13912 -34.49929 -34.35954 -32.09603 -31.79313 -30.80737 -29.89063 -27.61029 -26.45825 -24.25751 -23.60647 -23.57047 -21.67391 -21.60436 -21.02702 -19.54473 -18.87312 -17.45553 -17.14741 -16.92228 -16.69800 -16.50202 -16.44589 -15.91544 -15.60062 -15.45441 -15.05531 -14.79060 -14.57880 -14.57120 -14.25005 -14.18416 -13.86113 -13.58574 -13.40932 -13.18982 -13.13477 -13.03810 -12.80432 -12.41090 -12.37886 -12.32897 -12.20381 -11.97084 -11.79974 -11.74740 -11.34429 -10.98986 -10.75421 -10.41432 -10.23661 -9.80479 -9.41424 -9.38835 -8.35824 -6.51113 0.39651 0.52269 1.38543 1.47524 1.61227 1.66861 2.10788 2.40109 2.81544 2.99110 3.03768 3.54716 3.80333 3.89316 3.91393 4.03913 4.08332 4.14257 4.16026 4.18519 4.21968 4.44661 4.50898 4.56927 4.59306 4.61666 4.80620 4.83101 4.83816 4.92506 4.95958 4.96734 5.04927 5.09819 5.16419 5.23210 5.31690 5.42946 5.45565 5.51576 5.54455 5.72311 5.73247 6.06616 6.09742 6.15742 6.59980 6.98326 7.12343 7.29293 7.52402 8.78278 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038439 B = 0.002149 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.252073 B =13026.261954 C =13204.185992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.077 4.077 7 C 0.149 3.851 8 N -0.729 5.729 9 C 0.714 3.286 10 O -0.642 6.642 11 N -0.630 5.630 12 C 0.110 3.890 13 C -0.130 4.130 14 C 0.215 3.785 15 O -0.574 6.574 16 C -0.553 4.553 17 H 0.039 0.961 18 C 0.038 3.962 19 N -0.934 5.934 20 Si 0.940 3.060 21 H -0.262 1.262 22 H -0.309 1.309 23 H -0.221 1.221 24 C 0.120 3.880 25 C -0.120 4.120 26 C -0.132 4.132 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.375 0.625 42 H 0.268 0.732 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.133 0.867 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.189 -0.233 17.327 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.115 4.115 7 C 0.025 3.975 8 N -0.386 5.386 9 C 0.416 3.584 10 O -0.524 6.524 11 N -0.366 5.366 12 C -0.012 4.012 13 C -0.167 4.167 14 C 0.175 3.825 15 O -0.381 6.381 16 C -0.591 4.591 17 H 0.057 0.943 18 C -0.163 4.163 19 N -0.572 5.572 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.237 1.237 23 H -0.144 1.144 24 C -0.004 4.004 25 C -0.138 4.138 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.248 0.752 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.223 0.777 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.151 0.849 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.533 -0.343 17.198 30.786 hybrid contribution 1.012 0.249 -0.498 1.155 sum -24.521 -0.094 16.699 29.667 Atomic orbital electron populations 1.20831 0.89750 1.03438 1.03007 1.20292 0.97415 0.93225 0.99127 1.21296 0.94286 0.98397 1.01001 1.21303 0.94687 0.98103 0.99808 1.19769 0.95109 0.93616 1.01395 1.20682 0.91178 1.05169 0.94427 1.21138 0.77406 1.01248 0.97700 1.44939 1.07343 1.79817 1.06513 1.15633 0.80329 0.77888 0.84524 1.90860 1.67849 1.60962 1.32768 1.47608 1.03101 1.76685 1.09237 1.22108 0.89105 1.02840 0.87182 1.22939 0.96021 1.01912 0.95863 1.20005 0.90080 0.79176 0.93281 1.86379 1.96228 1.20643 1.34820 1.21346 0.91279 1.35547 1.10920 0.94314 1.25775 0.95636 0.94578 1.00311 1.70072 1.00942 1.48195 1.37970 0.86063 0.77376 0.80164 0.79859 1.18754 1.23723 1.14359 1.22589 0.90428 1.00254 0.87172 1.21306 0.94664 0.98089 0.99745 1.21301 0.94304 0.98382 1.00965 0.90330 0.90969 0.90924 0.84724 0.85081 0.88862 0.88649 0.92912 0.93148 0.75198 0.90065 0.88776 0.90434 0.89389 0.77716 0.92262 0.92380 0.92779 0.84927 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.24 0.71 -0.38 16 2 C -0.10 -1.48 5.88 -19.86 -0.12 -1.60 16 3 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 4 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 5 C -0.10 -1.61 5.13 -19.87 -0.10 -1.71 16 6 C -0.08 -1.09 5.46 29.85 0.16 -0.93 16 7 C 0.15 3.25 5.66 86.38 0.49 3.74 16 8 N -0.73 -17.89 5.52 -478.54 -2.64 -20.53 16 9 C 0.71 25.34 8.49 179.05 1.52 26.86 16 10 O -0.64 -28.52 16.60 -3.97 -0.07 -28.58 16 11 N -0.63 -22.27 3.32 -829.30 -2.76 -25.03 16 12 C 0.11 3.14 6.15 86.73 0.53 3.68 16 13 C -0.13 -4.75 4.62 31.78 0.15 -4.60 16 14 C 0.22 9.39 0.71 -10.07 -0.01 9.38 16 15 O -0.57 -24.41 10.84 -148.98 -1.62 -26.03 16 16 C -0.55 -29.65 8.84 25.60 0.23 -29.42 16 17 H 0.04 2.33 8.03 -2.91 -0.02 2.31 16 18 C 0.04 2.07 5.47 84.65 0.46 2.54 16 19 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 20 Si 0.94 42.17 23.98 68.60 1.65 43.82 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.31 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.22 -9.43 5.43 99.48 0.54 -8.89 16 24 C 0.12 5.00 6.10 86.94 0.53 5.53 16 25 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 26 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.60 8.08 -2.39 -0.02 0.59 16 29 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.10 1.07 8.09 -2.38 -0.02 1.05 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 7.39 7.46 -92.70 -0.69 6.70 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.80 4.80 -2.39 -0.01 2.79 16 40 H 0.09 3.23 8.04 -2.38 -0.02 3.21 16 41 H 0.37 14.63 9.06 -74.06 -0.67 13.95 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 44 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 45 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -73.07 372.23 -0.25 -73.32 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.54 Total: 32.48 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.42 Total: 6.10 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -5.10 Total: -101.10 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.68 Total: -54.61 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.65 Total: 43.82 kcal Total: -73.07 -0.25 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.371 kcal (2) G-P(sol) polarization free energy of solvation -73.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds