Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38240 * 119.99819 * 2 1 4 4 C 1.38239 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99781 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47576 * 89.99894 * 6 5 4 8 8 N 1.46498 * 109.47490 * 179.97438 * 7 6 5 9 9 C 1.34782 * 120.00018 * 179.72309 * 8 7 6 10 10 O 1.21584 * 120.00063 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99638 * 180.02562 * 9 8 7 12 12 C 1.47025 * 125.65315 * 359.69384 * 11 9 8 13 13 C 1.54332 * 107.26492 * 178.85104 * 12 11 9 14 14 C 1.55154 * 103.02233 * 338.13524 * 13 12 11 15 15 O 1.42896 * 111.00603 * 277.23639 * 14 13 12 16 16 C 1.50708 * 111.03431 * 153.39613 * 14 13 12 17 17 H 1.07994 * 119.99983 * 272.61028 * 16 14 13 18 18 C 1.37880 * 119.99771 * 92.61472 * 16 14 13 19 19 N 1.31506 * 119.99655 * 173.51902 * 18 16 14 20 20 Si 1.86800 * 119.99913 * 353.51429 * 18 16 14 21 21 H 1.48501 * 109.47008 * 87.32787 * 20 18 16 22 22 H 1.48503 * 109.47158 * 207.32378 * 20 18 16 23 23 H 1.48501 * 109.47169 * 327.32452 * 20 18 16 24 24 C 1.47426 * 125.64662 * 180.02562 * 11 9 8 25 25 C 1.38229 * 120.00147 * 0.25126 * 5 4 3 26 26 C 1.38239 * 119.99889 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47447 * 90.00608 * 1 2 3 28 28 H 1.09003 * 109.46783 * 210.00079 * 1 2 3 29 29 H 1.09004 * 109.47195 * 330.00074 * 1 2 3 30 30 H 1.07994 * 120.00279 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.99682 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47214 * 329.99623 * 6 5 4 33 33 H 1.09004 * 109.46916 * 209.99868 * 6 5 4 34 34 H 1.08996 * 109.47118 * 59.99487 * 7 6 5 35 35 H 1.09004 * 109.46977 * 299.99936 * 7 6 5 36 36 H 0.97000 * 119.99852 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.87586 * 298.39322 * 12 11 9 38 38 H 1.08997 * 109.88376 * 59.55429 * 12 11 9 39 39 H 1.09000 * 110.85037 * 219.66872 * 13 12 11 40 40 H 1.09003 * 110.51644 * 96.45275 * 13 12 11 41 41 H 0.96702 * 113.99656 * 168.40357 * 15 14 13 42 42 H 0.97010 * 119.99784 * 179.97438 * 19 18 16 43 43 H 1.09010 * 110.36612 * 322.92750 * 24 11 9 44 44 H 1.08993 * 110.36838 * 85.14018 * 24 11 9 45 45 H 1.07999 * 119.99930 * 179.73303 * 25 5 4 46 46 H 1.07995 * 120.00289 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2888 0.0001 1.4430 8 7 7.7537 -0.0005 1.4430 9 6 8.4277 0.0050 2.6102 10 8 7.8198 0.0110 3.6631 11 7 9.7754 0.0050 2.6101 12 6 10.6322 -0.0071 1.4154 13 6 12.0966 0.0274 1.9016 14 6 11.9766 0.6198 3.3306 15 8 11.9058 2.0464 3.2894 16 6 13.1176 0.1633 4.2029 17 1 13.0419 -0.7654 4.7489 18 6 14.2581 0.9315 4.3041 19 7 15.1997 0.6009 5.1605 20 14 14.4658 2.4417 3.2245 21 1 13.8468 3.6155 3.8910 22 1 15.9120 2.7008 3.0085 23 1 13.8036 2.2094 1.9157 24 6 10.6346 0.0102 3.8080 25 6 3.5806 -1.1971 -0.0052 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 6.1420 0.8900 -0.5134 33 1 6.1420 -0.8900 -0.5133 34 1 5.9254 -0.8898 1.9569 35 1 5.9254 0.8901 1.9568 36 1 8.2387 -0.0005 0.6029 37 1 10.4521 -0.9147 0.8393 38 1 10.4263 0.8704 0.8025 39 1 12.7014 0.6738 1.2657 40 1 12.5117 -0.9799 1.9352 41 1 11.6541 2.4521 4.1304 42 1 16.0023 1.1412 5.2314 43 1 10.1932 0.6296 4.5889 44 1 10.7854 -1.0064 4.1711 45 1 4.1206 -2.1324 -0.0096 46 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591964622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = -59.516055 kcal Electronic energy + Delta-G solvation = -25908.207513 eV Core-core repulsion = 22183.281072 eV Total energy + Delta-G solvation = -3724.926441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.03944 -39.65465 -37.85349 -35.66377 -34.70963 -33.50628 -32.37027 -31.20748 -30.74953 -29.75876 -28.31730 -26.53761 -24.99410 -23.10075 -23.01564 -22.36113 -20.94831 -19.87061 -19.69051 -17.88970 -17.37986 -16.41373 -16.11333 -15.83431 -15.54617 -15.30029 -15.02304 -14.83222 -14.47725 -14.26571 -14.03666 -13.70419 -13.61826 -13.33576 -13.00180 -12.72338 -12.68036 -12.59506 -12.36716 -11.97948 -11.79834 -11.71380 -11.55906 -11.48815 -11.37198 -11.15156 -11.02560 -10.50089 -10.38798 -10.20703 -9.83510 -9.23833 -9.20728 -8.99660 -8.78764 -8.66870 -8.52714 -7.99402 -6.19308 -4.31311 1.01175 1.12752 2.90566 3.45234 3.45740 3.51788 3.52725 3.68654 4.20631 4.47241 4.49525 4.52477 4.70774 4.73298 4.77849 4.85656 5.02203 5.08866 5.14152 5.18322 5.22908 5.30452 5.34671 5.40289 5.47957 5.56678 5.68364 5.74217 5.80387 5.83263 5.84250 5.91831 6.09446 6.12491 6.30348 6.34738 6.49520 6.53573 6.59140 6.65920 6.72348 6.72936 7.05154 7.33341 7.48450 8.12463 8.28627 8.62209 8.81651 8.89943 9.42131 10.89483 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.002137 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.804240 B =13101.739026 C =13237.813559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.147 3.853 8 N -0.751 5.751 9 C 0.719 3.281 10 O -0.598 6.598 11 N -0.629 5.629 12 C 0.101 3.899 13 C -0.120 4.120 14 C 0.219 3.781 15 O -0.559 6.559 16 C -0.552 4.552 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.887 5.887 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.327 1.327 23 H -0.270 1.270 24 C 0.108 3.892 25 C -0.109 4.109 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.394 0.606 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.371 0.629 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.850 -1.173 -14.601 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.129 4.129 7 C 0.022 3.978 8 N -0.408 5.408 9 C 0.421 3.579 10 O -0.477 6.477 11 N -0.366 5.366 12 C -0.022 4.022 13 C -0.158 4.158 14 C 0.179 3.821 15 O -0.367 6.367 16 C -0.589 4.589 17 H 0.100 0.900 18 C -0.131 4.131 19 N -0.522 5.522 20 Si 0.788 3.212 21 H -0.221 1.221 22 H -0.258 1.258 23 H -0.196 1.196 24 C -0.015 4.015 25 C -0.127 4.127 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.220 0.780 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.054 -1.266 -14.329 28.028 hybrid contribution 0.291 0.797 -0.337 0.913 sum -23.764 -0.469 -14.666 27.929 Atomic orbital electron populations 1.20794 0.91283 1.02815 1.02240 1.19947 0.96085 0.93287 0.99815 1.21029 0.94154 0.97552 1.01011 1.21079 0.94197 0.97676 0.99750 1.19650 0.94796 0.93367 1.00632 1.20786 0.91571 1.03698 0.96874 1.21070 0.78703 1.02533 0.95459 1.45100 1.06679 1.81565 1.07421 1.15450 0.80563 0.78051 0.83874 1.90893 1.67272 1.59024 1.30502 1.47715 1.02864 1.76516 1.09480 1.22050 0.92662 0.99655 0.87823 1.22947 0.92651 1.02152 0.98043 1.20257 0.91504 0.77672 0.92710 1.86102 1.89854 1.21806 1.38940 1.21108 0.99066 1.09802 1.28958 0.90043 1.25117 0.95062 0.98449 0.94467 1.69971 1.08514 1.39745 1.33986 0.85633 0.72742 0.81317 0.81538 1.22087 1.25823 1.19621 1.22992 0.90463 1.01641 0.86357 1.21071 0.94189 0.97645 0.99810 1.21026 0.94152 0.97541 1.01039 0.91249 0.91552 0.91552 0.86091 0.85899 0.90245 0.90253 0.91677 0.91679 0.77177 0.92752 0.92505 0.90190 0.89624 0.78049 0.92413 0.91230 0.91233 0.85910 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 4 C -0.11 -0.95 9.70 -39.58 -0.38 -1.34 16 5 C -0.08 -0.75 5.13 -104.63 -0.54 -1.29 16 6 C -0.09 -0.76 5.46 -27.89 -0.15 -0.91 16 7 C 0.15 1.71 5.66 -4.04 -0.02 1.69 16 8 N -0.75 -10.06 5.52 -65.23 -0.36 -10.42 16 9 C 0.72 13.11 8.49 -86.92 -0.74 12.37 16 10 O -0.60 -13.17 16.60 5.29 0.09 -13.08 16 11 N -0.63 -11.47 3.33 -176.22 -0.59 -12.05 16 12 C 0.10 1.60 6.15 -3.06 -0.02 1.58 16 13 C -0.12 -2.27 5.90 -24.89 -0.15 -2.42 16 14 C 0.22 4.78 0.70 -89.61 -0.06 4.72 16 15 O -0.56 -12.12 8.52 -35.23 -0.30 -12.42 16 16 C -0.55 -14.45 8.89 -34.44 -0.31 -14.75 16 17 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 18 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 19 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 20 Si 0.95 23.14 24.93 -169.99 -4.24 18.90 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.33 -8.16 7.11 56.52 0.40 -7.76 16 23 H -0.27 -6.38 5.42 56.52 0.31 -6.07 16 24 C 0.11 2.22 6.07 -2.52 -0.02 2.20 16 25 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 26 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.39 4.30 7.46 -40.82 -0.30 3.99 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.55 6.65 -51.93 -0.35 1.21 16 40 H 0.09 1.59 8.03 -51.93 -0.42 1.18 16 41 H 0.37 7.28 8.99 45.56 0.41 7.69 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.47 8.02 -51.92 -0.42 1.05 16 44 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -33.24 373.81 -9.50 -42.74 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.62 Total: 7.91 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.89 Total: -1.91 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.17 Total: -47.78 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.21 Total: -25.49 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.24 Total: 18.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.24 -9.50 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.772 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds