Wall clock time and date at job start Tue Mar 31 2020 12:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38240 * 119.99819 * 2 1 4 4 C 1.38239 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99781 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47576 * 89.99894 * 6 5 4 8 8 N 1.46498 * 109.47490 * 179.97438 * 7 6 5 9 9 C 1.34782 * 120.00018 * 179.72309 * 8 7 6 10 10 O 1.21584 * 120.00063 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99638 * 180.02562 * 9 8 7 12 12 C 1.47025 * 125.65315 * 359.69384 * 11 9 8 13 13 C 1.54332 * 107.26492 * 178.85104 * 12 11 9 14 14 C 1.55154 * 103.02233 * 338.13524 * 13 12 11 15 15 O 1.42896 * 111.00603 * 277.23639 * 14 13 12 16 16 C 1.50708 * 111.03431 * 153.39613 * 14 13 12 17 17 H 1.07994 * 119.99983 * 272.61028 * 16 14 13 18 18 C 1.37880 * 119.99771 * 92.61472 * 16 14 13 19 19 N 1.31506 * 119.99655 * 173.51902 * 18 16 14 20 20 Si 1.86800 * 119.99913 * 353.51429 * 18 16 14 21 21 H 1.48501 * 109.47008 * 87.32787 * 20 18 16 22 22 H 1.48503 * 109.47158 * 207.32378 * 20 18 16 23 23 H 1.48501 * 109.47169 * 327.32452 * 20 18 16 24 24 C 1.47426 * 125.64662 * 180.02562 * 11 9 8 25 25 C 1.38229 * 120.00147 * 0.25126 * 5 4 3 26 26 C 1.38239 * 119.99889 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47447 * 90.00608 * 1 2 3 28 28 H 1.09003 * 109.46783 * 210.00079 * 1 2 3 29 29 H 1.09004 * 109.47195 * 330.00074 * 1 2 3 30 30 H 1.07994 * 120.00279 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.99682 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47214 * 329.99623 * 6 5 4 33 33 H 1.09004 * 109.46916 * 209.99868 * 6 5 4 34 34 H 1.08996 * 109.47118 * 59.99487 * 7 6 5 35 35 H 1.09004 * 109.46977 * 299.99936 * 7 6 5 36 36 H 0.97000 * 119.99852 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.87586 * 298.39322 * 12 11 9 38 38 H 1.08997 * 109.88376 * 59.55429 * 12 11 9 39 39 H 1.09000 * 110.85037 * 219.66872 * 13 12 11 40 40 H 1.09003 * 110.51644 * 96.45275 * 13 12 11 41 41 H 0.96702 * 113.99656 * 168.40357 * 15 14 13 42 42 H 0.97010 * 119.99784 * 179.97438 * 19 18 16 43 43 H 1.09010 * 110.36612 * 322.92750 * 24 11 9 44 44 H 1.08993 * 110.36838 * 85.14018 * 24 11 9 45 45 H 1.07999 * 119.99930 * 179.73303 * 25 5 4 46 46 H 1.07995 * 120.00289 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2888 0.0001 1.4430 8 7 7.7537 -0.0005 1.4430 9 6 8.4277 0.0050 2.6102 10 8 7.8198 0.0110 3.6631 11 7 9.7754 0.0050 2.6101 12 6 10.6322 -0.0071 1.4154 13 6 12.0966 0.0274 1.9016 14 6 11.9766 0.6198 3.3306 15 8 11.9058 2.0464 3.2894 16 6 13.1176 0.1633 4.2029 17 1 13.0419 -0.7654 4.7489 18 6 14.2581 0.9315 4.3041 19 7 15.1997 0.6009 5.1605 20 14 14.4658 2.4417 3.2245 21 1 13.8468 3.6155 3.8910 22 1 15.9120 2.7008 3.0085 23 1 13.8036 2.2094 1.9157 24 6 10.6346 0.0102 3.8080 25 6 3.5806 -1.1971 -0.0052 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 6.1420 0.8900 -0.5134 33 1 6.1420 -0.8900 -0.5133 34 1 5.9254 -0.8898 1.9569 35 1 5.9254 0.8901 1.9568 36 1 8.2387 -0.0005 0.6029 37 1 10.4521 -0.9147 0.8393 38 1 10.4263 0.8704 0.8025 39 1 12.7014 0.6738 1.2657 40 1 12.5117 -0.9799 1.9352 41 1 11.6541 2.4521 4.1304 42 1 16.0023 1.1412 5.2314 43 1 10.1932 0.6296 4.5889 44 1 10.7854 -1.0064 4.1711 45 1 4.1206 -2.1324 -0.0096 46 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591964622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:01 Heat of formation + Delta-G solvation = -82.330155 kcal Electronic energy + Delta-G solvation = -25909.196806 eV Core-core repulsion = 22183.281072 eV Total energy + Delta-G solvation = -3725.915734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37347 -40.36958 -39.39714 -36.67552 -36.31972 -34.45110 -34.36644 -32.07624 -31.79398 -30.77329 -29.88684 -27.60091 -26.48503 -24.25655 -23.60879 -23.52818 -21.63995 -21.55722 -21.00883 -19.57341 -18.94538 -17.42367 -17.19701 -17.02339 -16.76005 -16.59933 -16.40354 -15.91885 -15.69662 -15.43840 -15.20510 -14.58907 -14.57909 -14.51362 -14.24430 -14.03190 -13.83023 -13.56222 -13.39935 -13.34048 -13.15381 -13.08044 -12.74048 -12.41290 -12.33855 -12.29117 -12.19783 -11.97647 -11.93884 -11.74997 -11.37005 -11.22160 -10.63022 -10.40583 -10.24112 -9.80606 -9.42082 -9.39034 -8.32714 -6.46455 0.39516 0.52039 1.52259 1.54365 1.61292 1.76080 2.11048 2.47078 2.81511 2.98228 3.05389 3.49938 3.84572 3.89161 3.90919 4.05513 4.10122 4.14796 4.15918 4.18443 4.28809 4.43785 4.50716 4.57141 4.61485 4.62394 4.82650 4.83521 4.83867 4.93228 4.95869 4.98155 5.06193 5.18649 5.22943 5.23353 5.31509 5.39243 5.45661 5.54147 5.55130 5.72113 5.73073 6.05999 6.09629 6.15615 6.59333 6.89843 7.00761 7.31282 7.52805 8.80153 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.002137 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.804240 B =13101.739026 C =13237.813559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.077 4.077 7 C 0.149 3.851 8 N -0.729 5.729 9 C 0.714 3.286 10 O -0.642 6.642 11 N -0.631 5.631 12 C 0.107 3.893 13 C -0.118 4.118 14 C 0.216 3.784 15 O -0.559 6.559 16 C -0.548 4.548 17 H 0.044 0.956 18 C 0.024 3.976 19 N -0.937 5.937 20 Si 1.012 2.988 21 H -0.288 1.288 22 H -0.337 1.337 23 H -0.253 1.253 24 C 0.117 3.883 25 C -0.120 4.120 26 C -0.132 4.132 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.379 0.621 42 H 0.267 0.733 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.133 0.867 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.583 -0.577 -17.575 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.114 4.114 7 C 0.025 3.975 8 N -0.386 5.386 9 C 0.416 3.584 10 O -0.525 6.525 11 N -0.367 5.367 12 C -0.015 4.015 13 C -0.156 4.156 14 C 0.176 3.824 15 O -0.367 6.367 16 C -0.586 4.586 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.574 5.574 20 Si 0.845 3.155 21 H -0.215 1.215 22 H -0.270 1.270 23 H -0.178 1.178 24 C -0.008 4.008 25 C -0.138 4.138 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.248 0.752 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.151 0.849 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.819 -0.674 -17.369 31.125 hybrid contribution 0.741 0.538 0.653 1.125 sum -25.078 -0.136 -16.716 30.139 Atomic orbital electron populations 1.20833 0.89758 1.03436 1.03005 1.20292 0.97412 0.93229 0.99132 1.21298 0.94294 0.98393 1.01004 1.21305 0.94680 0.98106 0.99817 1.19768 0.95124 0.93609 1.01391 1.20680 0.91138 1.05161 0.94466 1.21131 0.77435 1.01226 0.97692 1.44939 1.07287 1.79811 1.06573 1.15641 0.80374 0.77898 0.84502 1.90864 1.68113 1.60953 1.32545 1.47627 1.03071 1.76684 1.09355 1.22161 0.89689 1.02632 0.86993 1.22859 0.95236 1.01822 0.95706 1.20143 0.90292 0.77924 0.94070 1.86060 1.89723 1.21378 1.39570 1.21342 1.00449 1.08202 1.28630 0.93793 1.25885 0.94851 1.01291 0.95544 1.70093 1.09489 1.41543 1.36300 0.84659 0.72056 0.78108 0.80652 1.21548 1.26988 1.17803 1.22632 0.90375 1.00517 0.87231 1.21307 0.94656 0.98088 0.99745 1.21305 0.94312 0.98376 1.00958 0.90327 0.90924 0.90978 0.84738 0.85087 0.88873 0.88649 0.92940 0.93169 0.75197 0.89079 0.90201 0.89961 0.89666 0.77181 0.92445 0.92513 0.92471 0.84911 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.23 0.71 -0.37 16 2 C -0.10 -1.47 5.88 -19.86 -0.12 -1.59 16 3 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 4 C -0.12 -1.94 9.70 22.27 0.22 -1.73 16 5 C -0.10 -1.59 5.13 -19.87 -0.10 -1.69 16 6 C -0.08 -1.07 5.46 29.85 0.16 -0.91 16 7 C 0.15 3.21 5.66 86.38 0.49 3.70 16 8 N -0.73 -17.52 5.52 -478.54 -2.64 -20.16 16 9 C 0.71 24.83 8.49 179.05 1.52 26.35 16 10 O -0.64 -28.15 16.60 -3.98 -0.07 -28.22 16 11 N -0.63 -21.66 3.33 -829.70 -2.76 -24.42 16 12 C 0.11 2.95 6.15 86.73 0.53 3.49 16 13 C -0.12 -4.17 5.90 31.78 0.19 -3.98 16 14 C 0.22 9.22 0.70 -10.14 -0.01 9.21 16 15 O -0.56 -23.05 8.52 -148.98 -1.27 -24.32 16 16 C -0.55 -29.17 8.89 25.60 0.23 -28.94 16 17 H 0.04 2.61 8.00 -2.91 -0.02 2.59 16 18 C 0.02 1.34 5.46 84.66 0.46 1.80 16 19 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 20 Si 1.01 47.17 24.93 68.60 1.71 48.88 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.34 -16.25 7.11 99.48 0.71 -15.55 16 23 H -0.25 -10.98 5.42 99.48 0.54 -10.44 16 24 C 0.12 4.74 6.07 86.86 0.53 5.27 16 25 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 26 C -0.13 -1.96 9.70 22.27 0.22 -1.75 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 30 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 33 H 0.10 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 7.20 7.46 -92.71 -0.69 6.50 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.89 6.65 -2.39 -0.02 2.88 16 40 H 0.08 3.00 8.03 -2.39 -0.02 2.98 16 41 H 0.38 14.33 8.99 -74.06 -0.67 13.66 16 42 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 43 H 0.06 2.43 8.02 -2.38 -0.02 2.41 16 44 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 45 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -73.21 373.81 0.20 -73.01 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.54 Total: 26.06 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.46 Total: 5.41 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -5.10 Total: -100.81 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.34 Total: -52.53 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.71 Total: 48.88 kcal Total: -73.21 0.20 -73.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.322 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds