Wall clock time and date at job start Tue Mar 31 2020 12:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99868 * 2 1 4 4 C 1.38220 * 120.00045 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99681 * 0.07174 * 4 3 2 6 6 C 1.38207 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00352 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47236 * 200.00324 * 7 6 5 9 9 C 1.52993 * 109.47301 * 79.99832 * 7 6 5 10 10 N 1.46506 * 109.47011 * 320.00148 * 7 6 5 11 11 C 1.34778 * 119.99842 * 205.00213 * 10 7 6 12 12 O 1.21585 * 119.99926 * 359.97438 * 11 10 7 13 13 N 1.34782 * 119.99655 * 180.02562 * 11 10 7 14 14 C 1.47424 * 125.64894 * 359.68558 * 13 11 10 15 15 C 1.55129 * 104.72251 * 155.81890 * 14 13 11 16 16 C 1.55162 * 101.48429 * 37.29471 * 15 14 13 17 17 O 1.42904 * 110.71872 * 82.69592 * 16 15 14 18 18 C 1.50697 * 110.87137 * 205.89608 * 16 15 14 19 19 H 1.07998 * 120.00540 * 355.06826 * 18 16 15 20 20 C 1.37881 * 119.99743 * 175.06362 * 18 16 15 21 21 N 1.31516 * 119.99887 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99881 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46871 * 90.00457 * 22 20 18 24 24 H 1.48499 * 109.47038 * 210.00133 * 22 20 18 25 25 H 1.48497 * 109.47166 * 330.00359 * 22 20 18 26 26 C 1.47019 * 125.64509 * 180.02562 * 13 11 10 27 27 C 1.38204 * 120.00276 * 180.13118 * 2 1 3 28 28 H 1.09002 * 109.47284 * 269.86807 * 1 2 3 29 29 H 1.08996 * 109.47210 * 29.86595 * 1 2 3 30 30 H 1.09002 * 109.47150 * 149.86811 * 1 2 3 31 31 H 1.08002 * 120.00347 * 0.08443 * 3 2 1 32 32 H 1.08000 * 119.99660 * 180.34106 * 4 3 2 33 33 H 1.08000 * 119.99309 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47163 * 60.00241 * 9 7 6 35 35 H 1.09001 * 109.47430 * 180.02562 * 9 7 6 36 36 H 1.09004 * 109.47377 * 300.00405 * 9 7 6 37 37 H 0.97002 * 119.99854 * 24.99901 * 10 7 6 38 38 H 1.08998 * 110.36888 * 274.75026 * 14 13 11 39 39 H 1.08998 * 110.36502 * 37.07178 * 14 13 11 40 40 H 1.09002 * 111.19257 * 279.19482 * 15 14 13 41 41 H 1.08997 * 110.90877 * 155.27841 * 15 14 13 42 42 H 0.96696 * 113.99942 * 185.02201 * 17 16 15 43 43 H 0.97000 * 119.99710 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.88196 * 300.43233 * 26 13 11 45 45 H 1.08989 * 109.88924 * 61.44677 * 26 13 11 46 46 H 1.08012 * 119.99953 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0026 6 6 3.5807 -1.1969 -0.0035 7 6 4.3341 -2.5020 -0.0063 8 1 3.6791 -3.2990 -0.3583 9 6 4.8078 -2.8205 1.4131 10 7 5.4937 -2.3945 -0.8954 11 6 6.0169 -3.5022 -1.4573 12 8 5.5270 -4.5907 -1.2260 13 7 7.0840 -3.4034 -2.2747 14 6 7.7706 -2.1521 -2.6438 15 6 9.2059 -2.5909 -3.0359 16 6 8.9314 -3.9383 -3.7549 17 8 8.5558 -3.7177 -5.1159 18 6 10.1334 -4.8438 -3.6756 19 1 11.0519 -4.4848 -3.2352 20 6 10.0606 -6.1306 -4.1654 21 7 8.9423 -6.5676 -4.7021 22 14 11.5503 -7.2533 -4.0665 23 1 11.5200 -8.0043 -2.7856 24 1 11.5253 -8.2100 -5.2019 25 1 12.7897 -6.4381 -4.1331 26 6 7.7515 -4.5248 -2.9516 27 6 2.1981 -1.1968 -0.0027 28 1 -0.3634 -0.0024 1.0277 29 1 -0.3633 0.8911 -0.5117 30 1 -0.3633 -0.8888 -0.5159 31 1 1.6583 2.1327 0.0014 32 1 4.1204 2.1327 0.0050 33 1 5.3517 0.0001 -0.0034 34 1 3.9451 -2.9005 2.0746 35 1 5.3531 -3.7643 1.4111 36 1 5.4628 -2.0235 1.7651 37 1 5.8847 -1.5262 -1.0796 38 1 7.2711 -1.6806 -3.4900 39 1 7.8017 -1.4713 -1.7931 40 1 9.8278 -2.7389 -2.1530 41 1 9.6608 -1.8707 -3.7160 42 1 8.2992 -4.5214 -5.5883 43 1 8.8909 -7.4730 -5.0462 44 1 8.1229 -5.2354 -2.2132 45 1 7.0522 -5.0211 -3.6243 46 1 1.6581 -2.1323 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592030241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:08 Heat of formation + Delta-G solvation = -78.368776 kcal Electronic energy + Delta-G solvation = -26819.379320 eV Core-core repulsion = 23093.635363 eV Total energy + Delta-G solvation = -3725.743956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.50577 -40.41234 -39.14728 -36.72229 -36.07507 -34.22855 -33.45992 -32.81898 -31.45445 -30.17191 -29.47136 -27.77536 -26.98031 -25.02595 -24.03100 -23.06403 -21.58653 -21.23299 -20.78499 -19.29796 -18.93539 -17.63077 -17.26897 -17.08738 -16.68950 -16.31338 -16.02399 -15.91898 -15.28755 -15.15336 -14.77930 -14.71626 -14.65914 -14.37236 -14.11752 -13.88776 -13.80592 -13.51004 -13.28928 -13.19597 -13.03291 -12.85208 -12.72168 -12.56693 -12.45670 -12.33065 -12.28583 -12.09134 -11.97125 -11.71660 -11.32466 -11.16719 -10.65806 -10.32337 -10.29406 -9.73447 -9.52613 -9.42391 -8.25996 -6.41829 0.36808 0.47055 1.41030 1.43027 1.52820 1.65467 2.12329 2.37919 2.81347 3.00777 3.05669 3.53921 3.79336 3.90538 4.04411 4.05250 4.16504 4.23332 4.25957 4.29594 4.37045 4.51615 4.54193 4.56759 4.65238 4.71949 4.82572 4.85170 4.87398 4.98402 5.05125 5.11438 5.12522 5.19206 5.24447 5.30908 5.35185 5.42008 5.49776 5.55850 5.68019 5.71453 5.74735 6.02628 6.10293 6.16086 6.65094 7.03276 7.27468 7.35035 7.54294 8.80139 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.002742 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.574632 B =10210.041355 C =10505.561783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.094 4.094 7 C 0.201 3.799 8 H 0.070 0.930 9 C -0.150 4.150 10 N -0.724 5.724 11 C 0.712 3.288 12 O -0.641 6.641 13 N -0.636 5.636 14 C 0.107 3.893 15 C -0.109 4.109 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.280 1.280 24 H -0.282 1.282 25 H -0.264 1.264 26 C 0.142 3.858 27 C -0.124 4.124 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.375 0.625 43 H 0.269 0.731 44 H 0.029 0.971 45 H 0.026 0.974 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 17.801 10.862 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.145 4.145 6 C -0.094 4.094 7 C 0.097 3.903 8 H 0.088 0.912 9 C -0.208 4.208 10 N -0.381 5.381 11 C 0.414 3.586 12 O -0.524 6.524 13 N -0.372 5.372 14 C -0.015 4.015 15 C -0.147 4.147 16 C 0.193 3.807 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.206 1.206 24 H -0.207 1.207 25 H -0.188 1.188 26 C 0.018 3.982 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.224 0.776 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.647 17.486 11.147 24.289 hybrid contribution 0.735 -1.707 -0.468 1.917 sum -11.912 15.779 10.680 22.470 Atomic orbital electron populations 1.20842 0.89563 1.03494 1.03162 1.20199 0.97392 0.92769 0.98762 1.21397 0.94545 0.98189 1.00204 1.21425 0.94617 0.98369 0.98716 1.21087 1.00476 0.91923 1.01039 1.19813 0.94127 0.93863 1.01613 1.19599 0.85556 0.95086 0.90093 0.91201 1.22105 1.02281 1.01485 0.94933 1.45127 1.34075 1.07848 1.51093 1.15709 0.79648 0.84553 0.78691 1.90842 1.64825 1.28418 1.68299 1.47905 1.30613 1.10649 1.48067 1.22447 0.92682 0.85774 1.00584 1.22754 0.95496 0.96344 1.00115 1.19725 0.89234 0.92480 0.79293 1.86093 1.89402 1.37935 1.26026 1.21827 0.98813 0.97913 1.40864 0.91372 1.25838 0.98823 0.99352 0.93672 1.69816 1.27108 1.18563 1.40004 0.85468 0.79736 0.78373 0.77540 1.20555 1.20749 1.18804 1.22345 0.94196 0.87536 0.94097 1.21037 0.93096 0.98730 1.01409 0.90128 0.90265 0.91520 0.83834 0.83518 0.85145 0.90009 0.94169 0.91000 0.75615 0.91219 0.88129 0.89694 0.89049 0.77627 0.92145 0.95261 0.95537 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.09 -1.51 5.88 -19.87 -0.12 -1.62 16 3 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 4 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 5 C -0.13 -2.27 9.05 22.27 0.20 -2.07 16 6 C -0.09 -2.02 4.95 -19.87 -0.10 -2.12 16 7 C 0.20 5.39 2.78 44.24 0.12 5.51 16 8 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 9 C -0.15 -3.63 9.46 71.98 0.68 -2.95 16 10 N -0.72 -21.69 4.99 -461.41 -2.30 -23.99 16 11 C 0.71 29.54 8.45 179.05 1.51 31.05 16 12 O -0.64 -32.44 16.33 -3.98 -0.07 -32.50 16 13 N -0.64 -26.70 3.32 -829.33 -2.76 -29.46 16 14 C 0.11 3.51 6.58 86.93 0.57 4.08 16 15 C -0.11 -4.13 6.24 32.07 0.20 -3.93 16 16 C 0.23 11.38 0.85 -10.35 -0.01 11.37 16 17 O -0.59 -29.88 13.07 -148.98 -1.95 -31.83 16 18 C -0.56 -29.37 8.13 25.60 0.21 -29.17 16 19 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 20 C 0.02 1.28 5.28 84.66 0.45 1.72 16 21 N -0.92 -50.74 10.96 21.45 0.24 -50.51 16 22 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 C 0.14 7.27 5.23 86.73 0.45 7.72 16 27 C -0.12 -2.50 9.32 22.27 0.21 -2.29 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.13 1.97 6.92 -2.91 -0.02 1.95 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 9.73 5.34 -92.71 -0.50 9.24 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.39 7.29 -2.39 -0.02 2.38 16 40 H 0.08 3.06 8.04 -2.39 -0.02 3.04 16 41 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.37 20.02 7.45 -74.06 -0.55 19.47 16 43 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.03 1.66 7.81 -2.39 -0.02 1.64 16 45 H 0.03 1.51 7.92 -2.39 -0.02 1.49 16 46 H 0.12 2.36 8.04 -2.90 -0.02 2.34 16 Total: -1.00 -69.03 375.00 0.67 -68.36 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.06 Total: 41.68 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.54 Total: 13.66 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.82 Total: -103.95 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -2.01 Total: -64.33 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.03 0.67 -68.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.009 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds