Wall clock time and date at job start Tue Mar 31 2020 13:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38307 * 119.96163 * 2 1 4 4 C 1.38265 * 120.14052 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.06908 * 359.68407 * 4 3 2 6 6 C 1.38851 * 119.92485 * 0.58912 * 5 4 3 7 7 N 1.39931 * 120.06722 * 179.70255 * 6 5 4 8 8 C 1.34780 * 120.00178 * 335.16106 * 7 6 5 9 9 O 1.21293 * 119.99694 * 354.47851 * 8 7 6 10 10 C 1.50696 * 120.00289 * 174.48179 * 8 7 6 11 11 N 1.46895 * 109.47297 * 180.02562 * 10 8 7 12 12 C 1.47438 * 111.00381 * 69.86862 * 11 10 8 13 13 C 1.54319 * 107.23566 * 123.26196 * 12 11 10 14 14 C 1.55143 * 103.01608 * 22.28061 * 13 12 11 15 15 O 1.42897 * 110.98971 * 82.48208 * 14 13 12 16 16 C 1.50705 * 110.98997 * 206.25810 * 14 13 12 17 17 H 1.07993 * 120.00210 * 118.55248 * 16 14 13 18 18 C 1.37881 * 119.99867 * 298.55032 * 16 14 13 19 19 N 1.31513 * 120.00257 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99885 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47056 * 59.99597 * 20 18 16 22 22 H 1.48497 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46928 * 299.99690 * 20 18 16 24 24 C 1.47847 * 110.99924 * 190.71486 * 11 10 8 25 25 C 1.38086 * 119.96590 * 180.02562 * 2 1 3 26 26 C 1.50702 * 120.03818 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47159 * 269.97709 * 1 2 3 28 28 H 1.08997 * 109.47016 * 29.98004 * 1 2 3 29 29 H 1.08998 * 109.46886 * 149.97943 * 1 2 3 30 30 H 1.07997 * 119.93354 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96430 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.03800 * 180.31418 * 5 4 3 33 33 H 0.96996 * 120.00132 * 155.16365 * 7 6 5 34 34 H 1.08995 * 109.47506 * 59.99544 * 10 8 7 35 35 H 1.08998 * 109.46959 * 299.99792 * 10 8 7 36 36 H 1.09001 * 109.89262 * 242.66575 * 12 11 10 37 37 H 1.08999 * 109.89230 * 3.85531 * 12 11 10 38 38 H 1.08990 * 110.71320 * 140.66946 * 13 12 11 39 39 H 1.09002 * 110.70245 * 263.90434 * 13 12 11 40 40 H 0.96707 * 114.00143 * 61.44995 * 15 14 13 41 41 H 0.96994 * 120.00101 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.37396 * 332.46255 * 24 11 10 43 43 H 1.08999 * 110.37166 * 94.80637 * 24 11 10 44 44 H 1.09002 * 109.46960 * 269.97778 * 26 25 2 45 45 H 1.09004 * 109.46530 * 29.97530 * 26 25 2 46 46 H 1.08998 * 109.47471 * 149.97717 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2763 0.0093 0.0055 6 6 3.5857 -1.1953 -0.0002 7 7 4.2876 -2.4058 -0.0004 8 6 5.5439 -2.4563 -0.4858 9 8 6.0300 -1.4782 -1.0134 10 6 6.3448 -3.7279 -0.3731 11 7 7.6710 -3.5260 -0.9717 12 6 8.4895 -2.6170 -0.1486 13 6 9.7857 -3.3715 0.2147 14 6 9.8816 -4.4544 -0.8922 15 8 10.4618 -3.9190 -2.0832 16 6 10.6570 -5.6530 -0.4091 17 1 10.1800 -6.6206 -0.3598 18 6 11.9754 -5.5141 -0.0300 19 7 12.5564 -4.3359 -0.0906 20 14 12.9367 -6.9999 0.5681 21 1 12.9776 -8.0271 -0.5035 22 1 14.3214 -6.5881 0.9116 23 1 12.2752 -7.5658 1.7712 24 6 8.3901 -4.8102 -1.1119 25 6 2.1968 -1.1963 -0.0005 26 6 1.4433 -2.5014 -0.0017 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6561 2.1325 0.0004 31 1 4.1169 2.1399 -0.0010 32 1 5.3562 0.0133 0.0102 33 1 3.8700 -3.2087 0.3488 34 1 5.8273 -4.5309 -0.8979 35 1 6.4577 -3.9942 0.6778 36 1 8.7304 -1.7182 -0.7163 37 1 7.9486 -2.3507 0.7595 38 1 10.6452 -2.7025 0.1748 39 1 9.7003 -3.8327 1.1986 40 1 11.3651 -3.5932 -1.9687 41 1 13.4837 -4.2381 0.1764 42 1 8.0533 -5.5183 -0.3547 43 1 8.2412 -5.2214 -2.1103 44 1 1.2617 -2.8170 1.0257 45 1 0.4909 -2.3706 -0.5155 46 1 2.0324 -3.2606 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:49 Heat of formation + Delta-G solvation = -49.116517 kcal Electronic energy + Delta-G solvation = -26656.393644 eV Core-core repulsion = 22931.918161 eV Total energy + Delta-G solvation = -3724.475483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76184 -39.08696 -37.90176 -35.05108 -34.53588 -33.49056 -32.13235 -31.28744 -30.05669 -28.14101 -27.71087 -26.58830 -26.22313 -24.20973 -22.32172 -21.30904 -20.38719 -19.78084 -19.55171 -17.69204 -16.97707 -16.71421 -15.97460 -15.75615 -15.28472 -14.89973 -14.87034 -14.63100 -14.20982 -13.98898 -13.87069 -13.60017 -13.15455 -13.10422 -12.84152 -12.60953 -12.43426 -12.24626 -12.16900 -11.99787 -11.70017 -11.55127 -11.25518 -11.23872 -11.12575 -11.05374 -10.75981 -10.46189 -10.39459 -10.29341 -9.86203 -9.54374 -9.20116 -8.64974 -8.60310 -8.07297 -8.04070 -7.64654 -6.21186 -4.30101 1.20911 1.30213 2.69930 2.93913 3.22421 3.28035 3.30273 3.71542 4.27941 4.56744 4.60415 4.69338 4.76641 4.85971 4.92421 5.06813 5.19426 5.25114 5.34610 5.37122 5.39902 5.45549 5.54164 5.58390 5.64215 5.69568 5.74654 5.91241 6.03550 6.07385 6.16213 6.21029 6.37306 6.47946 6.51339 6.53172 6.66084 6.88929 7.01699 7.07733 7.29955 7.40020 7.49263 7.59630 7.66581 7.81695 8.14416 8.21879 8.71787 9.38645 9.53602 10.85681 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.002485 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.276318 B =11263.577888 C =11663.880976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.135 4.135 6 C 0.162 3.838 7 N -0.678 5.678 8 C 0.512 3.488 9 O -0.489 6.489 10 C 0.033 3.967 11 N -0.510 5.510 12 C 0.054 3.946 13 C -0.146 4.146 14 C 0.253 3.747 15 O -0.578 6.578 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.059 3.941 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.408 0.592 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.377 0.623 41 H 0.267 0.733 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 5.822 3.767 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.162 4.162 4 C -0.118 4.118 5 C -0.155 4.155 6 C 0.067 3.933 7 N -0.324 5.324 8 C 0.299 3.701 9 O -0.361 6.361 10 C -0.099 4.099 11 N -0.234 5.234 12 C -0.074 4.074 13 C -0.186 4.186 14 C 0.213 3.787 15 O -0.385 6.385 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.068 4.068 25 C -0.128 4.128 26 C -0.173 4.173 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.244 0.756 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.226 0.774 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.976 6.617 2.668 23.105 hybrid contribution 1.027 -1.327 1.675 2.371 sum -20.949 5.290 4.343 22.039 Atomic orbital electron populations 1.20833 0.91275 1.02765 1.02220 1.19487 0.95684 0.92098 0.99814 1.20941 0.94258 0.97225 1.03731 1.21037 0.93997 0.97802 0.98978 1.21445 1.01893 0.90622 1.01536 1.17626 0.90179 0.86016 0.99499 1.43709 1.15609 1.10371 1.62718 1.21073 0.80734 0.91248 0.77023 1.90677 1.69187 1.36688 1.39509 1.22137 0.93616 0.94336 0.99832 1.63390 1.00199 1.12653 1.47200 1.22806 0.94169 0.96574 0.93824 1.23307 0.95758 0.99417 1.00080 1.19496 0.87434 0.89992 0.81814 1.86153 1.33735 1.82832 1.35827 1.21485 0.96789 0.95074 1.44265 0.92144 1.25006 0.97531 0.96160 0.94401 1.69730 1.13110 1.22424 1.47951 0.86533 0.78817 0.82715 0.79190 1.20037 1.21152 1.20227 1.23052 0.94625 0.88647 1.00473 1.19393 0.91446 0.95667 1.06289 1.20777 1.00278 0.94026 1.02191 0.91235 0.91635 0.91249 0.86305 0.85871 0.83642 0.75604 0.88189 0.91800 0.91016 0.95137 0.90298 0.92692 0.77361 0.92283 0.93323 0.90786 0.91237 0.90792 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.60 36.01 0.35 -0.44 16 2 C -0.07 -0.70 5.88 -104.65 -0.62 -1.31 16 3 C -0.14 -1.47 9.70 -39.55 -0.38 -1.85 16 4 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 5 C -0.13 -1.88 8.72 -39.39 -0.34 -2.23 16 6 C 0.16 2.07 6.41 -83.69 -0.54 1.53 16 7 N -0.68 -8.01 4.98 -9.86 -0.05 -8.06 16 8 C 0.51 7.79 7.28 -10.99 -0.08 7.71 16 9 O -0.49 -9.32 12.71 5.55 0.07 -9.25 16 10 C 0.03 0.49 5.03 -4.98 -0.03 0.46 16 11 N -0.51 -10.12 4.85 -232.70 -1.13 -11.25 16 12 C 0.05 1.11 5.65 -2.84 -0.02 1.10 16 13 C -0.15 -3.42 5.38 -24.91 -0.13 -3.55 16 14 C 0.25 6.29 0.87 -89.63 -0.08 6.22 16 15 O -0.58 -15.41 13.16 -35.23 -0.46 -15.87 16 16 C -0.54 -14.24 8.27 -34.44 -0.28 -14.52 16 17 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 18 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 19 N -0.89 -23.86 10.75 55.43 0.60 -23.26 16 20 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 25 C -0.13 -1.32 5.90 -104.43 -0.62 -1.94 16 26 C -0.12 -0.87 9.04 36.01 0.33 -0.54 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 5.94 -51.93 -0.31 0.11 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.15 2.33 5.79 -52.49 -0.30 2.03 16 33 H 0.41 3.43 7.40 -40.82 -0.30 3.13 16 34 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.03 0.58 7.31 -51.93 -0.38 0.20 16 38 H 0.08 1.97 7.54 -51.93 -0.39 1.58 16 39 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 40 H 0.38 10.10 7.56 45.56 0.34 10.44 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 46 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -31.01 365.30 -9.60 -40.61 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.16 Total: 14.04 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.95 Total: -7.90 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.58 Total: -42.57 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.39 Total: -25.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.01 -9.60 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.505 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds