Wall clock time and date at job start Tue Mar 31 2020 13:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38307 * 119.96163 * 2 1 4 4 C 1.38265 * 120.14052 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.06908 * 359.68407 * 4 3 2 6 6 C 1.38851 * 119.92485 * 0.58912 * 5 4 3 7 7 N 1.39931 * 120.06722 * 179.70255 * 6 5 4 8 8 C 1.34780 * 120.00178 * 335.16106 * 7 6 5 9 9 O 1.21293 * 119.99694 * 354.47851 * 8 7 6 10 10 C 1.50696 * 120.00289 * 174.48179 * 8 7 6 11 11 N 1.46895 * 109.47297 * 180.02562 * 10 8 7 12 12 C 1.47438 * 111.00381 * 69.86862 * 11 10 8 13 13 C 1.54319 * 107.23566 * 123.26196 * 12 11 10 14 14 C 1.55143 * 103.01608 * 22.28061 * 13 12 11 15 15 O 1.42897 * 110.98971 * 82.48208 * 14 13 12 16 16 C 1.50705 * 110.98997 * 206.25810 * 14 13 12 17 17 H 1.07993 * 120.00210 * 118.55248 * 16 14 13 18 18 C 1.37881 * 119.99867 * 298.55032 * 16 14 13 19 19 N 1.31513 * 120.00257 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99885 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47056 * 59.99597 * 20 18 16 22 22 H 1.48497 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46928 * 299.99690 * 20 18 16 24 24 C 1.47847 * 110.99924 * 190.71486 * 11 10 8 25 25 C 1.38086 * 119.96590 * 180.02562 * 2 1 3 26 26 C 1.50702 * 120.03818 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47159 * 269.97709 * 1 2 3 28 28 H 1.08997 * 109.47016 * 29.98004 * 1 2 3 29 29 H 1.08998 * 109.46886 * 149.97943 * 1 2 3 30 30 H 1.07997 * 119.93354 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96430 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.03800 * 180.31418 * 5 4 3 33 33 H 0.96996 * 120.00132 * 155.16365 * 7 6 5 34 34 H 1.08995 * 109.47506 * 59.99544 * 10 8 7 35 35 H 1.08998 * 109.46959 * 299.99792 * 10 8 7 36 36 H 1.09001 * 109.89262 * 242.66575 * 12 11 10 37 37 H 1.08999 * 109.89230 * 3.85531 * 12 11 10 38 38 H 1.08990 * 110.71320 * 140.66946 * 13 12 11 39 39 H 1.09002 * 110.70245 * 263.90434 * 13 12 11 40 40 H 0.96707 * 114.00143 * 61.44995 * 15 14 13 41 41 H 0.96994 * 120.00101 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.37396 * 332.46255 * 24 11 10 43 43 H 1.08999 * 110.37166 * 94.80637 * 24 11 10 44 44 H 1.09002 * 109.46960 * 269.97778 * 26 25 2 45 45 H 1.09004 * 109.46530 * 29.97530 * 26 25 2 46 46 H 1.08998 * 109.47471 * 149.97717 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2763 0.0093 0.0055 6 6 3.5857 -1.1953 -0.0002 7 7 4.2876 -2.4058 -0.0004 8 6 5.5439 -2.4563 -0.4858 9 8 6.0300 -1.4782 -1.0134 10 6 6.3448 -3.7279 -0.3731 11 7 7.6710 -3.5260 -0.9717 12 6 8.4895 -2.6170 -0.1486 13 6 9.7857 -3.3715 0.2147 14 6 9.8816 -4.4544 -0.8922 15 8 10.4618 -3.9190 -2.0832 16 6 10.6570 -5.6530 -0.4091 17 1 10.1800 -6.6206 -0.3598 18 6 11.9754 -5.5141 -0.0300 19 7 12.5564 -4.3359 -0.0906 20 14 12.9367 -6.9999 0.5681 21 1 12.9776 -8.0271 -0.5035 22 1 14.3214 -6.5881 0.9116 23 1 12.2752 -7.5658 1.7712 24 6 8.3901 -4.8102 -1.1119 25 6 2.1968 -1.1963 -0.0005 26 6 1.4433 -2.5014 -0.0017 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6561 2.1325 0.0004 31 1 4.1169 2.1399 -0.0010 32 1 5.3562 0.0133 0.0102 33 1 3.8700 -3.2087 0.3488 34 1 5.8273 -4.5309 -0.8979 35 1 6.4577 -3.9942 0.6778 36 1 8.7304 -1.7182 -0.7163 37 1 7.9486 -2.3507 0.7595 38 1 10.6452 -2.7025 0.1748 39 1 9.7003 -3.8327 1.1986 40 1 11.3651 -3.5932 -1.9687 41 1 13.4837 -4.2381 0.1764 42 1 8.0533 -5.5183 -0.3547 43 1 8.2412 -5.2214 -2.1103 44 1 1.2617 -2.8170 1.0257 45 1 0.4909 -2.3706 -0.5155 46 1 2.0324 -3.2606 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:48 Heat of formation + Delta-G solvation = -71.001745 kcal Electronic energy + Delta-G solvation = -26657.342658 eV Core-core repulsion = 22931.918161 eV Total energy + Delta-G solvation = -3725.424498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.80170 -40.32619 -39.36346 -36.48161 -35.95776 -34.26170 -34.17633 -32.44979 -31.37347 -29.92981 -28.66823 -27.72328 -27.17925 -25.95566 -23.41456 -22.15208 -21.90591 -21.42360 -20.87844 -19.09455 -18.55603 -17.80448 -17.21791 -16.87272 -16.78002 -16.51978 -16.26355 -15.83462 -15.58932 -15.20983 -15.11602 -14.57091 -14.29191 -14.10786 -13.92233 -13.83254 -13.63808 -13.50398 -13.40425 -13.14490 -12.98093 -12.87757 -12.80169 -12.69823 -12.52816 -12.29155 -12.27072 -12.19830 -11.87554 -11.72821 -11.38516 -11.12286 -10.72521 -10.58915 -10.08381 -9.46500 -9.19661 -8.95619 -8.20158 -6.36840 0.31419 0.43925 1.42531 1.44363 1.51608 1.59303 1.90464 2.39160 2.84626 3.02972 3.15053 3.62421 3.89912 3.94467 3.96139 4.06513 4.12262 4.17428 4.26851 4.33023 4.36794 4.44499 4.48016 4.54168 4.71643 4.75998 4.80460 4.89224 4.89499 4.91677 4.99244 5.07328 5.12614 5.24977 5.34554 5.37613 5.45811 5.51912 5.53536 5.62236 5.71655 5.78940 5.91353 6.07537 6.15477 6.20477 6.47146 6.69716 7.13893 7.34686 7.44635 8.85106 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.002485 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.276318 B =11263.577888 C =11663.880976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.113 4.113 5 C -0.164 4.164 6 C 0.139 3.861 7 N -0.659 5.659 8 C 0.512 3.488 9 O -0.537 6.537 10 C 0.032 3.968 11 N -0.526 5.526 12 C 0.070 3.930 13 C -0.136 4.136 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.558 4.558 17 H 0.062 0.938 18 C 0.027 3.973 19 N -0.913 5.913 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.069 3.931 25 C -0.124 4.124 26 C -0.116 4.116 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.426 0.574 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.371 0.629 41 H 0.268 0.732 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.046 4.487 4.724 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.161 4.161 4 C -0.132 4.132 5 C -0.185 4.185 6 C 0.044 3.956 7 N -0.306 5.306 8 C 0.300 3.700 9 O -0.412 6.412 10 C -0.099 4.099 11 N -0.251 5.251 12 C -0.058 4.058 13 C -0.175 4.175 14 C 0.192 3.808 15 O -0.398 6.398 16 C -0.596 4.596 17 H 0.080 0.920 18 C -0.174 4.174 19 N -0.553 5.553 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.193 1.193 24 C -0.058 4.058 25 C -0.127 4.127 26 C -0.173 4.173 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.149 5.260 3.648 25.951 hybrid contribution 1.901 -0.842 1.376 2.493 sum -23.248 4.418 5.024 24.192 Atomic orbital electron populations 1.20903 0.88642 1.03923 1.03399 1.19971 0.97607 0.91624 0.98319 1.21278 0.93600 0.98751 1.02520 1.21211 0.95087 0.97487 0.99403 1.21364 1.00749 0.92418 1.03942 1.17807 0.91275 0.85638 1.00902 1.43425 1.14468 1.11014 1.61660 1.21125 0.81571 0.90636 0.76633 1.90683 1.70419 1.38140 1.41943 1.22270 0.91107 0.95192 1.01344 1.63206 1.01856 1.11746 1.48257 1.22537 0.93433 0.95636 0.94201 1.23111 0.96108 0.98806 0.99504 1.19833 0.89372 0.89996 0.81580 1.86149 1.33389 1.82993 1.37224 1.21781 0.97528 0.95631 1.44701 0.91982 1.25757 0.98430 0.98657 0.94509 1.69845 1.13232 1.23964 1.48223 0.85553 0.77403 0.79490 0.78800 1.19898 1.21031 1.19340 1.22907 0.92437 0.89577 1.00866 1.19772 0.90567 0.97567 1.04768 1.20878 1.00534 0.92261 1.03597 0.89873 0.90615 0.90048 0.83881 0.85114 0.86678 0.73514 0.84975 0.89483 0.93417 0.93425 0.92871 0.93036 0.78099 0.92316 0.91296 0.91270 0.89467 0.89244 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.60 71.24 0.68 -0.43 16 2 C -0.07 -1.30 5.88 -19.88 -0.12 -1.41 16 3 C -0.14 -2.72 9.70 22.29 0.22 -2.51 16 4 C -0.11 -2.71 10.04 22.25 0.22 -2.48 16 5 C -0.16 -4.78 8.72 22.39 0.20 -4.58 16 6 C 0.14 3.45 6.41 38.15 0.24 3.70 16 7 N -0.66 -14.72 4.98 -303.49 -1.51 -16.24 16 8 C 0.51 15.32 7.28 87.66 0.64 15.96 16 9 O -0.54 -21.15 12.71 -3.07 -0.04 -21.18 16 10 C 0.03 0.89 5.03 85.56 0.43 1.32 16 11 N -0.53 -20.65 4.85 -890.14 -4.32 -24.96 16 12 C 0.07 2.95 5.65 86.65 0.49 3.44 16 13 C -0.14 -6.50 5.38 31.78 0.17 -6.33 16 14 C 0.23 11.69 0.87 -10.15 -0.01 11.69 16 15 O -0.59 -32.47 13.16 -148.98 -1.96 -34.43 16 16 C -0.56 -29.60 8.27 25.60 0.21 -29.38 16 17 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 18 C 0.03 1.43 5.29 84.66 0.45 1.88 16 19 N -0.91 -49.69 10.75 21.45 0.23 -49.46 16 20 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.07 2.90 5.86 86.77 0.51 3.40 16 25 C -0.12 -2.36 5.90 -19.74 -0.12 -2.47 16 26 C -0.12 -1.33 9.04 71.24 0.64 -0.69 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.08 0.63 5.94 -2.39 -0.01 0.62 16 30 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.12 4.02 5.79 -2.91 -0.02 4.00 16 33 H 0.43 6.07 7.40 -92.71 -0.69 5.39 16 34 H 0.13 2.84 8.07 -2.39 -0.02 2.83 16 35 H 0.09 2.09 7.96 -2.39 -0.02 2.07 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.82 7.31 -2.39 -0.02 1.80 16 38 H 0.05 2.77 7.54 -2.39 -0.02 2.75 16 39 H 0.05 2.44 8.03 -2.39 -0.02 2.42 16 40 H 0.37 20.75 7.56 -74.05 -0.56 20.19 16 41 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.07 2.57 7.70 -2.39 -0.02 2.55 16 43 H 0.07 2.94 8.14 -2.39 -0.02 2.93 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.77 5.94 -2.39 -0.01 0.75 16 46 H 0.07 0.73 6.98 -2.39 -0.02 0.71 16 Total: -1.00 -69.37 365.30 -0.95 -70.32 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.24 Total: 41.05 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.86 Total: -8.90 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -5.60 Total: -90.66 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -2.00 Total: -55.61 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.37 -0.95 -70.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.683 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds