Wall clock time and date at job start Tue Mar 31 2020 13:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38304 * 119.96295 * 2 1 4 4 C 1.38256 * 120.13798 * 179.77004 * 3 2 1 5 5 C 1.38139 * 120.07426 * 0.50485 * 4 3 2 6 6 C 1.38851 * 119.92496 * 359.75333 * 5 4 3 7 7 N 1.39921 * 120.06980 * 179.97438 * 6 5 4 8 8 C 1.34782 * 120.00208 * 24.84349 * 7 6 5 9 9 O 1.21286 * 119.99612 * 5.51591 * 8 7 6 10 10 C 1.50695 * 120.00429 * 185.51995 * 8 7 6 11 11 N 1.46895 * 109.47285 * 179.97438 * 10 8 7 12 12 C 1.48530 * 111.00092 * 52.60139 * 11 10 8 13 13 C 1.54941 * 103.22905 * 159.72028 * 12 11 10 14 14 C 1.54600 * 102.92106 * 322.58762 * 13 12 11 15 15 O 1.42894 * 110.39221 * 262.99787 * 14 13 12 16 16 C 1.50700 * 110.30770 * 140.87230 * 14 13 12 17 17 H 1.08000 * 119.99599 * 244.28331 * 16 14 13 18 18 C 1.37868 * 119.99978 * 64.28644 * 16 14 13 19 19 N 1.31520 * 120.00226 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99728 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47376 * 90.00183 * 20 18 16 22 22 H 1.48510 * 109.46685 * 209.99744 * 20 18 16 23 23 H 1.48499 * 109.47355 * 329.99402 * 20 18 16 24 24 C 1.47906 * 110.99968 * 170.00049 * 11 10 8 25 25 C 1.38088 * 119.96469 * 180.28126 * 2 1 3 26 26 C 1.50701 * 120.03708 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47138 * 269.72075 * 1 2 3 28 28 H 1.09002 * 109.47116 * 149.72531 * 1 2 3 29 29 H 1.09000 * 109.47170 * 29.72491 * 1 2 3 30 30 H 1.07998 * 119.93092 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.96631 * 180.27937 * 4 3 2 32 32 H 1.07995 * 120.03871 * 179.76684 * 5 4 3 33 33 H 0.97002 * 120.00420 * 204.83869 * 7 6 5 34 34 H 1.08998 * 109.46979 * 300.00224 * 10 8 7 35 35 H 1.09003 * 109.47043 * 59.99517 * 10 8 7 36 36 H 1.09001 * 110.67179 * 278.15813 * 12 11 10 37 37 H 1.09003 * 110.66510 * 41.28862 * 12 11 10 38 38 H 1.08995 * 110.72436 * 204.23027 * 13 12 11 39 39 H 1.08995 * 110.87369 * 81.01364 * 13 12 11 40 40 H 0.96700 * 114.00230 * 295.75890 * 15 14 13 41 41 H 0.96993 * 119.99777 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.91569 * 333.50824 * 24 11 10 43 43 H 1.08995 * 109.91610 * 94.60612 * 24 11 10 44 44 H 1.09001 * 109.47157 * 90.00306 * 26 25 2 45 45 H 1.09005 * 109.47205 * 210.00417 * 26 25 2 46 46 H 1.09005 * 109.47022 * 330.00130 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2024 0.0048 5 6 4.2762 0.0092 -0.0009 6 6 3.5857 -1.1954 -0.0063 7 7 4.2875 -2.4059 -0.0127 8 6 5.5422 -2.4600 0.4766 9 8 6.0264 -1.4859 1.0130 10 6 6.3434 -3.7307 0.3573 11 7 7.6676 -3.5333 0.9619 12 6 7.5478 -3.0076 2.3459 13 6 8.9176 -3.3596 2.9787 14 6 9.2361 -4.7429 2.3662 15 8 8.8579 -5.7854 3.2673 16 6 10.7032 -4.8439 2.0370 17 1 11.0200 -4.9511 1.0101 18 6 11.6409 -4.7995 3.0468 19 7 11.2551 -4.6685 4.2972 20 14 13.4595 -4.9239 2.6386 21 1 14.0090 -3.5640 2.4065 22 1 14.1784 -5.5616 3.7709 23 1 13.6370 -5.7452 1.4142 24 6 8.3932 -4.8167 1.0794 25 6 2.1967 -1.1963 -0.0059 26 6 1.4433 -2.5014 -0.0117 27 1 -0.3633 -0.0050 1.0276 28 1 -0.3633 -0.8875 -0.5181 29 1 -0.3633 0.8924 -0.5096 30 1 1.6560 2.1325 0.0004 31 1 4.1169 2.1397 0.0093 32 1 5.3562 0.0132 -0.0010 33 1 3.8711 -3.2062 -0.3692 34 1 5.8241 -4.5375 0.8744 35 1 6.4598 -3.9894 -0.6952 36 1 7.3947 -1.9284 2.3357 37 1 6.7384 -3.5070 2.8784 38 1 8.8353 -3.4278 4.0634 39 1 9.6753 -2.6289 2.6959 40 1 9.3559 -5.7888 4.0962 41 1 11.9148 -4.6368 5.0075 42 1 7.6825 -5.6403 1.1478 43 1 9.0418 -4.9571 0.2148 44 1 1.2612 -2.8113 -1.0408 45 1 2.0325 -3.2635 0.4984 46 1 0.4910 -2.3735 0.5031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:52 Heat of formation + Delta-G solvation = -47.188787 kcal Electronic energy + Delta-G solvation = -26746.091984 eV Core-core repulsion = 23021.700094 eV Total energy + Delta-G solvation = -3724.391890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.83333 -39.17121 -37.83966 -35.15733 -34.57383 -33.49208 -32.03756 -31.36712 -30.12569 -28.03437 -27.69095 -26.57242 -26.14355 -24.12529 -22.27325 -21.35151 -20.57729 -19.92794 -19.38077 -17.65526 -17.08151 -16.73031 -16.01645 -15.84298 -15.11384 -14.95537 -14.79214 -14.67017 -14.33236 -13.87758 -13.77813 -13.49234 -13.21342 -13.13847 -12.96513 -12.69765 -12.45018 -12.34463 -12.11655 -11.98759 -11.64089 -11.54523 -11.34584 -11.15329 -11.11984 -10.87244 -10.57243 -10.46990 -10.44334 -10.29675 -9.90291 -9.41640 -9.09399 -8.65484 -8.55199 -8.10341 -8.01024 -7.80921 -6.16107 -4.22087 1.18459 1.28285 2.62984 2.89771 3.27074 3.33715 3.37367 3.68954 4.35265 4.55582 4.58238 4.65952 4.70356 4.86652 4.94337 5.11926 5.18867 5.28188 5.33846 5.37135 5.40621 5.42400 5.48411 5.53984 5.65318 5.74989 5.77487 5.99518 6.10315 6.15010 6.21553 6.30371 6.35640 6.37622 6.45419 6.50926 6.72664 6.94975 7.00149 7.17290 7.26728 7.31502 7.55921 7.66359 7.69344 7.88042 8.14984 8.19963 8.79095 9.44414 9.55165 10.91718 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031159 B = 0.002554 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.414824 B =10962.121113 C =11310.653700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.100 4.100 5 C -0.134 4.134 6 C 0.160 3.840 7 N -0.676 5.676 8 C 0.513 3.487 9 O -0.492 6.492 10 C 0.028 3.972 11 N -0.498 5.498 12 C 0.029 3.971 13 C -0.119 4.119 14 C 0.243 3.757 15 O -0.596 6.596 16 C -0.527 4.527 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.053 3.947 25 C -0.124 4.124 26 C -0.115 4.115 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.409 0.591 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 6.417 -9.091 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.161 4.161 4 C -0.119 4.119 5 C -0.154 4.154 6 C 0.065 3.935 7 N -0.321 5.321 8 C 0.301 3.699 9 O -0.365 6.365 10 C -0.103 4.103 11 N -0.223 5.223 12 C -0.098 4.098 13 C -0.158 4.158 14 C 0.203 3.797 15 O -0.406 6.406 16 C -0.565 4.565 17 H 0.080 0.920 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.074 4.074 25 C -0.127 4.127 26 C -0.172 4.172 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.245 0.755 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.287 7.275 -9.341 23.489 hybrid contribution 0.744 -0.854 0.648 1.305 sum -19.542 6.421 -8.693 22.332 Atomic orbital electron populations 1.20800 0.91243 1.02679 1.02275 1.19499 0.95695 0.92084 0.99793 1.20952 0.94282 0.97237 1.03608 1.21041 0.93991 0.97824 0.98996 1.21464 1.01969 0.90557 1.01410 1.17625 0.90176 0.85954 0.99727 1.43677 1.15591 1.10612 1.62270 1.20998 0.80663 0.91174 0.77053 1.90642 1.68968 1.37217 1.39653 1.22242 0.92017 0.93238 1.02837 1.64837 1.11885 1.24862 1.20695 1.23546 0.98265 1.01027 0.86943 1.22998 0.93594 0.99928 0.99278 1.19344 0.91787 0.83889 0.84700 1.86057 1.66101 1.55051 1.33416 1.21684 0.90851 1.50216 0.93787 0.91959 1.25017 0.99525 0.93913 0.94974 1.69623 1.34574 1.50635 0.99197 0.86452 0.84403 0.78280 0.78004 1.20528 1.21188 1.19823 1.22943 0.96396 0.88064 0.99967 1.19407 0.91453 0.95661 1.06190 1.20744 1.00256 0.94025 1.02154 0.91214 0.91409 0.91580 0.86286 0.85842 0.83485 0.75540 0.91923 0.87849 0.88798 0.95752 0.91830 0.91375 0.76411 0.92360 0.94499 0.90031 0.91222 0.91834 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.19 36.01 0.33 -0.44 16 2 C -0.07 -0.69 5.88 -104.65 -0.62 -1.30 16 3 C -0.14 -1.44 9.70 -39.55 -0.38 -1.82 16 4 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 5 C -0.13 -1.83 8.72 -39.39 -0.34 -2.17 16 6 C 0.16 2.01 6.41 -83.70 -0.54 1.47 16 7 N -0.68 -7.82 4.98 -9.86 -0.05 -7.87 16 8 C 0.51 7.64 7.35 -10.99 -0.08 7.56 16 9 O -0.49 -9.03 10.68 5.55 0.06 -8.97 16 10 C 0.03 0.42 5.52 -4.98 -0.03 0.39 16 11 N -0.50 -9.85 5.26 -231.89 -1.22 -11.07 16 12 C 0.03 0.62 5.30 -1.90 -0.01 0.61 16 13 C -0.12 -2.91 5.50 -24.87 -0.14 -3.05 16 14 C 0.24 6.15 0.99 -90.41 -0.09 6.06 16 15 O -0.60 -15.72 12.93 -35.23 -0.46 -16.18 16 16 C -0.53 -14.35 8.10 -34.44 -0.28 -14.63 16 17 H 0.06 1.68 7.35 -52.49 -0.39 1.30 16 18 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 19 N -0.90 -24.51 10.88 55.43 0.60 -23.91 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.05 1.16 6.16 -2.75 -0.02 1.14 16 25 C -0.12 -1.30 5.90 -104.43 -0.62 -1.92 16 26 C -0.12 -0.86 8.63 36.01 0.31 -0.55 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.39 6.70 -51.93 -0.35 0.05 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.15 2.29 5.79 -52.49 -0.30 1.99 16 33 H 0.41 3.37 7.41 -40.82 -0.30 3.07 16 34 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.09 2.04 5.97 -51.93 -0.31 1.73 16 37 H 0.02 0.51 8.02 -51.93 -0.42 0.10 16 38 H 0.06 1.61 8.06 -51.93 -0.42 1.19 16 39 H 0.07 1.78 7.85 -51.93 -0.41 1.37 16 40 H 0.38 10.35 7.05 45.56 0.32 10.67 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.04 0.76 7.39 -51.93 -0.38 0.38 16 43 H 0.08 1.75 7.40 -51.93 -0.38 1.37 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.46 6.99 -51.93 -0.36 0.10 16 46 H 0.07 0.47 6.70 -51.93 -0.35 0.13 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -30.95 361.63 -9.74 -40.69 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.12 Total: 14.31 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.98 Total: -8.49 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.67 Total: -42.85 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.40 Total: -25.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.95 -9.74 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.499 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds