Wall clock time and date at job start Tue Mar 31 2020 13:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38304 * 119.93214 * 2 1 4 4 C 1.38087 * 120.07096 * 180.02562 * 3 2 1 5 5 C 1.38885 * 119.93156 * 359.97438 * 4 3 2 6 6 N 1.39931 * 120.07095 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99720 * 24.84891 * 6 5 4 8 8 O 1.21287 * 120.00320 * 5.51398 * 7 6 5 9 9 C 1.50697 * 119.99963 * 185.51654 * 7 6 5 10 10 N 1.46903 * 109.47531 * 179.97438 * 9 7 6 11 11 C 1.47444 * 110.99610 * 69.87189 * 10 9 7 12 12 C 1.54320 * 107.22734 * 123.26238 * 11 10 9 13 13 C 1.55132 * 103.02067 * 22.28414 * 12 11 10 14 14 O 1.42898 * 110.99647 * 82.47545 * 13 12 11 15 15 C 1.50706 * 110.99058 * 206.25258 * 13 12 11 16 16 H 1.08000 * 119.99752 * 118.54195 * 15 13 12 17 17 C 1.37876 * 119.99949 * 298.55096 * 15 13 12 18 18 N 1.31512 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99805 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47094 * 59.99537 * 19 17 15 21 21 H 1.48497 * 109.46751 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47007 * 299.99564 * 19 17 15 23 23 C 1.47836 * 111.00304 * 190.72201 * 10 9 7 24 24 C 1.38855 * 119.85834 * 359.77546 * 5 4 3 25 25 C 1.50700 * 120.03480 * 180.24770 * 24 5 4 26 26 C 1.38130 * 119.92995 * 0.50235 * 24 5 4 27 27 H 1.09003 * 109.47480 * 269.97795 * 1 2 3 28 28 H 1.09003 * 109.47037 * 29.98020 * 1 2 3 29 29 H 1.09002 * 109.47252 * 149.97826 * 1 2 3 30 30 H 1.08009 * 119.96042 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.03169 * 179.97438 * 4 3 2 32 32 H 0.97005 * 119.99889 * 204.83864 * 6 5 4 33 33 H 1.08994 * 109.47186 * 299.99990 * 9 7 6 34 34 H 1.09002 * 109.47345 * 59.99693 * 9 7 6 35 35 H 1.09004 * 109.88596 * 242.66126 * 11 10 9 36 36 H 1.08999 * 109.89177 * 3.85485 * 11 10 9 37 37 H 1.09008 * 110.70197 * 140.66378 * 12 11 10 38 38 H 1.08997 * 110.70461 * 263.89411 * 12 11 10 39 39 H 0.96704 * 114.00059 * 61.44744 * 14 13 12 40 40 H 0.96994 * 120.00500 * 180.02562 * 18 17 15 41 41 H 1.09009 * 110.37389 * 332.46138 * 23 10 9 42 42 H 1.08998 * 110.38245 * 94.80637 * 23 10 9 43 43 H 1.08999 * 109.47448 * 270.25297 * 25 24 5 44 44 H 1.09000 * 109.47433 * 30.25118 * 25 24 5 45 45 H 1.09004 * 109.46938 * 150.25351 * 25 24 5 46 46 H 1.08000 * 119.97037 * 179.75062 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0005 6 7 5.6731 0.0000 -0.0005 7 6 6.3469 1.0591 0.4900 8 8 5.7447 1.9676 1.0219 9 6 7.8487 1.1146 0.3774 10 7 8.3394 2.3603 0.9820 11 6 8.1788 2.3353 2.4475 12 6 9.5738 2.5695 3.0642 13 6 10.3468 3.2785 1.9212 14 8 10.0601 4.6783 1.9007 15 6 11.8294 3.0358 2.0405 16 1 12.3578 2.5225 1.2507 17 6 12.5111 3.4687 3.1580 18 7 11.8677 4.0940 4.1196 19 14 14.3487 3.1672 3.3062 20 1 15.0515 3.8294 2.1780 21 1 14.8398 3.7260 4.5913 22 1 14.6154 1.7069 3.2667 23 6 9.7682 2.5744 0.6685 24 6 3.5781 -1.2017 0.0047 25 6 4.3291 -2.5081 0.0104 26 6 2.1968 -1.1983 -0.0006 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6553 2.1329 0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1581 -0.7624 -0.3534 33 1 8.2838 0.2616 0.8980 34 1 8.1357 1.0837 -0.6737 35 1 7.4978 3.1272 2.7594 36 1 7.7924 1.3657 2.7617 37 1 9.5045 3.2144 3.9404 38 1 10.0467 1.6211 3.3190 39 1 10.3178 5.1444 2.7078 40 1 12.3473 4.3989 4.9056 41 1 10.2681 1.6196 0.5051 42 1 9.8728 3.2135 -0.2082 43 1 4.5142 -2.8254 -1.0159 44 1 5.2799 -2.3785 0.5275 45 1 3.7367 -3.2656 0.5236 46 1 1.6550 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:54 Heat of formation + Delta-G solvation = -52.463727 kcal Electronic energy + Delta-G solvation = -26561.809855 eV Core-core repulsion = 22837.189226 eV Total energy + Delta-G solvation = -3724.620629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73080 -39.03798 -37.88810 -35.26073 -34.54777 -32.85404 -32.13186 -31.68895 -30.20413 -28.13313 -27.49462 -27.13069 -25.60737 -24.07743 -22.71288 -21.08015 -20.40275 -19.85313 -19.58011 -17.81690 -16.99554 -16.91314 -15.85244 -15.35849 -15.18138 -14.88424 -14.74056 -14.49855 -14.19122 -13.97720 -13.81667 -13.64906 -13.44180 -13.30498 -12.79966 -12.59133 -12.48960 -12.25790 -12.17517 -11.91743 -11.70830 -11.52725 -11.25062 -11.24062 -11.21262 -11.05029 -10.74395 -10.46083 -10.33259 -10.28689 -9.86082 -9.53484 -9.20000 -8.80821 -8.60248 -8.07159 -7.94671 -7.64510 -6.21043 -4.30002 1.17498 1.33005 2.69493 2.95169 3.22446 3.28065 3.30291 3.69960 4.28004 4.55679 4.61450 4.69515 4.75693 4.89882 5.05815 5.06977 5.12442 5.29197 5.33874 5.36466 5.41254 5.43318 5.46931 5.64359 5.69308 5.72624 5.79748 5.91459 6.00179 6.07942 6.16555 6.22230 6.32589 6.45589 6.50942 6.55919 6.66363 6.89416 7.01277 7.08161 7.30451 7.40225 7.49455 7.59934 7.66624 7.81805 8.14543 8.22236 8.71881 9.38747 9.53633 10.85813 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002471 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.575823 B =11329.350179 C =11742.397224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.125 4.125 5 C 0.153 3.847 6 N -0.678 5.678 7 C 0.512 3.488 8 O -0.490 6.490 9 C 0.033 3.967 10 N -0.510 5.510 11 C 0.054 3.946 12 C -0.146 4.146 13 C 0.253 3.747 14 O -0.578 6.578 15 C -0.538 4.538 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.059 3.941 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.267 0.733 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.901 -12.887 -8.118 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.145 4.145 5 C 0.058 3.942 6 N -0.324 5.324 7 C 0.299 3.701 8 O -0.362 6.362 9 C -0.099 4.099 10 N -0.234 5.234 11 C -0.073 4.073 12 C -0.186 4.186 13 C 0.213 3.787 14 O -0.385 6.385 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.170 4.170 26 C -0.120 4.120 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.226 0.774 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.741 -11.834 -8.350 22.903 hybrid contribution 1.943 -1.218 0.940 2.479 sum -15.798 -13.052 -7.410 21.791 Atomic orbital electron populations 1.20728 0.91367 1.02439 1.02084 1.19849 0.95967 0.93137 1.02176 1.20942 0.93662 0.97513 1.00080 1.21468 0.94190 0.98296 1.00538 1.17641 0.82565 0.93685 1.00351 1.43698 1.04632 1.21509 1.62565 1.21065 0.90616 0.81242 0.77157 1.90673 1.69503 1.36265 1.39720 1.22144 0.90516 0.94878 1.02382 1.63397 1.19452 1.29561 1.11019 1.22804 0.98991 0.99255 0.86293 1.23309 0.92977 1.01091 1.01190 1.19495 0.91660 0.79611 0.87965 1.86150 1.86205 1.21835 1.44358 1.21485 0.93308 1.38411 1.04404 0.92142 1.25006 0.98796 0.94119 0.95182 1.69729 1.36333 1.38606 1.08545 0.86534 0.84766 0.78523 0.77435 1.20036 1.21154 1.20229 1.23052 0.84615 0.98710 1.00421 1.19579 0.94016 0.93675 1.05105 1.20710 1.00028 0.94083 1.02182 1.20633 0.92559 0.97515 1.01298 0.91469 0.91716 0.91864 0.85927 0.83431 0.75614 0.91965 0.88059 0.91022 0.95144 0.90307 0.92703 0.77362 0.92283 0.93331 0.90779 0.91213 0.91784 0.91183 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.11 -1.14 5.88 -104.59 -0.62 -1.75 16 3 C -0.10 -1.22 9.69 -39.61 -0.38 -1.60 16 4 C -0.12 -1.73 8.72 -39.40 -0.34 -2.08 16 5 C 0.15 1.93 6.41 -83.69 -0.54 1.40 16 6 N -0.68 -7.97 4.97 -9.86 -0.05 -8.02 16 7 C 0.51 7.76 7.28 -10.99 -0.08 7.68 16 8 O -0.49 -9.30 12.71 5.55 0.07 -9.23 16 9 C 0.03 0.49 5.03 -4.98 -0.03 0.46 16 10 N -0.51 -10.11 4.85 -232.69 -1.13 -11.24 16 11 C 0.05 1.13 5.65 -2.83 -0.02 1.11 16 12 C -0.15 -3.43 5.37 -24.91 -0.13 -3.57 16 13 C 0.25 6.30 0.87 -89.63 -0.08 6.22 16 14 O -0.58 -15.40 13.16 -35.23 -0.46 -15.86 16 15 C -0.54 -14.24 8.27 -34.44 -0.28 -14.52 16 16 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 17 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 18 N -0.89 -23.88 10.75 55.43 0.60 -23.29 16 19 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 24 C -0.12 -1.27 5.90 -104.43 -0.62 -1.89 16 25 C -0.11 -0.85 9.44 36.01 0.34 -0.51 16 26 C -0.10 -1.00 9.35 -39.61 -0.37 -1.37 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.15 2.35 5.79 -52.49 -0.30 2.05 16 32 H 0.41 3.42 7.42 -40.82 -0.30 3.11 16 33 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 34 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 37 H 0.08 1.98 7.54 -51.92 -0.39 1.58 16 38 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.38 10.10 7.56 45.56 0.34 10.44 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.05 0.96 7.70 -51.92 -0.40 0.56 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.47 7.00 -51.93 -0.36 0.11 16 45 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -30.86 369.73 -9.70 -40.56 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.39 Total: 13.90 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.89 Total: -7.83 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.58 Total: -42.55 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.39 Total: -25.10 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.86 -9.70 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.901 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds