Wall clock time and date at job start Tue Mar 31 2020 13:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38304 * 119.93214 * 2 1 4 4 C 1.38087 * 120.07096 * 180.02562 * 3 2 1 5 5 C 1.38885 * 119.93156 * 359.97438 * 4 3 2 6 6 N 1.39931 * 120.07095 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99720 * 24.84891 * 6 5 4 8 8 O 1.21287 * 120.00320 * 5.51398 * 7 6 5 9 9 C 1.50697 * 119.99963 * 185.51654 * 7 6 5 10 10 N 1.46903 * 109.47531 * 179.97438 * 9 7 6 11 11 C 1.47444 * 110.99610 * 69.87189 * 10 9 7 12 12 C 1.54320 * 107.22734 * 123.26238 * 11 10 9 13 13 C 1.55132 * 103.02067 * 22.28414 * 12 11 10 14 14 O 1.42898 * 110.99647 * 82.47545 * 13 12 11 15 15 C 1.50706 * 110.99058 * 206.25258 * 13 12 11 16 16 H 1.08000 * 119.99752 * 118.54195 * 15 13 12 17 17 C 1.37876 * 119.99949 * 298.55096 * 15 13 12 18 18 N 1.31512 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99805 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47094 * 59.99537 * 19 17 15 21 21 H 1.48497 * 109.46751 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47007 * 299.99564 * 19 17 15 23 23 C 1.47836 * 111.00304 * 190.72201 * 10 9 7 24 24 C 1.38855 * 119.85834 * 359.77546 * 5 4 3 25 25 C 1.50700 * 120.03480 * 180.24770 * 24 5 4 26 26 C 1.38130 * 119.92995 * 0.50235 * 24 5 4 27 27 H 1.09003 * 109.47480 * 269.97795 * 1 2 3 28 28 H 1.09003 * 109.47037 * 29.98020 * 1 2 3 29 29 H 1.09002 * 109.47252 * 149.97826 * 1 2 3 30 30 H 1.08009 * 119.96042 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.03169 * 179.97438 * 4 3 2 32 32 H 0.97005 * 119.99889 * 204.83864 * 6 5 4 33 33 H 1.08994 * 109.47186 * 299.99990 * 9 7 6 34 34 H 1.09002 * 109.47345 * 59.99693 * 9 7 6 35 35 H 1.09004 * 109.88596 * 242.66126 * 11 10 9 36 36 H 1.08999 * 109.89177 * 3.85485 * 11 10 9 37 37 H 1.09008 * 110.70197 * 140.66378 * 12 11 10 38 38 H 1.08997 * 110.70461 * 263.89411 * 12 11 10 39 39 H 0.96704 * 114.00059 * 61.44744 * 14 13 12 40 40 H 0.96994 * 120.00500 * 180.02562 * 18 17 15 41 41 H 1.09009 * 110.37389 * 332.46138 * 23 10 9 42 42 H 1.08998 * 110.38245 * 94.80637 * 23 10 9 43 43 H 1.08999 * 109.47448 * 270.25297 * 25 24 5 44 44 H 1.09000 * 109.47433 * 30.25118 * 25 24 5 45 45 H 1.09004 * 109.46938 * 150.25351 * 25 24 5 46 46 H 1.08000 * 119.97037 * 179.75062 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0005 6 7 5.6731 0.0000 -0.0005 7 6 6.3469 1.0591 0.4900 8 8 5.7447 1.9676 1.0219 9 6 7.8487 1.1146 0.3774 10 7 8.3394 2.3603 0.9820 11 6 8.1788 2.3353 2.4475 12 6 9.5738 2.5695 3.0642 13 6 10.3468 3.2785 1.9212 14 8 10.0601 4.6783 1.9007 15 6 11.8294 3.0358 2.0405 16 1 12.3578 2.5225 1.2507 17 6 12.5111 3.4687 3.1580 18 7 11.8677 4.0940 4.1196 19 14 14.3487 3.1672 3.3062 20 1 15.0515 3.8294 2.1780 21 1 14.8398 3.7260 4.5913 22 1 14.6154 1.7069 3.2667 23 6 9.7682 2.5744 0.6685 24 6 3.5781 -1.2017 0.0047 25 6 4.3291 -2.5081 0.0104 26 6 2.1968 -1.1983 -0.0006 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6553 2.1329 0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1581 -0.7624 -0.3534 33 1 8.2838 0.2616 0.8980 34 1 8.1357 1.0837 -0.6737 35 1 7.4978 3.1272 2.7594 36 1 7.7924 1.3657 2.7617 37 1 9.5045 3.2144 3.9404 38 1 10.0467 1.6211 3.3190 39 1 10.3178 5.1444 2.7078 40 1 12.3473 4.3989 4.9056 41 1 10.2681 1.6196 0.5051 42 1 9.8728 3.2135 -0.2082 43 1 4.5142 -2.8254 -1.0159 44 1 5.2799 -2.3785 0.5275 45 1 3.7367 -3.2656 0.5236 46 1 1.6550 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:53 Heat of formation + Delta-G solvation = -74.048751 kcal Electronic energy + Delta-G solvation = -26562.745852 eV Core-core repulsion = 22837.189226 eV Total energy + Delta-G solvation = -3725.556626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.77695 -40.29582 -39.33186 -36.51359 -36.10736 -34.17542 -33.66562 -32.68701 -31.69170 -29.92723 -28.54091 -28.07131 -26.84616 -25.70439 -23.67399 -22.35485 -21.48105 -21.35318 -21.13965 -19.10277 -18.65698 -18.03528 -17.20292 -16.86445 -16.72188 -16.27041 -16.00164 -15.72787 -15.57782 -15.19211 -14.94361 -14.65895 -14.25908 -14.13073 -14.11175 -13.96927 -13.82760 -13.47870 -13.35807 -13.13659 -12.91976 -12.89329 -12.81160 -12.70053 -12.52274 -12.31293 -12.27998 -12.19215 -11.99235 -11.73282 -11.29146 -11.11983 -10.71360 -10.58481 -10.08197 -9.65835 -9.19463 -8.83395 -8.19977 -6.36695 0.29058 0.46025 1.42635 1.44487 1.51741 1.59209 1.91933 2.39294 2.83359 3.03135 3.15258 3.63071 3.89400 3.94880 3.96172 4.06309 4.09514 4.14447 4.33197 4.37163 4.38802 4.42070 4.45429 4.57069 4.70965 4.72158 4.82352 4.88426 4.88587 4.89796 5.04734 5.07627 5.13166 5.25146 5.29017 5.39699 5.45940 5.48534 5.53673 5.57881 5.72677 5.79110 5.91580 6.08174 6.14583 6.20698 6.47649 6.69852 7.14731 7.34835 7.44753 8.85271 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002471 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.575823 B =11329.350179 C =11742.397224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.120 4.120 4 C -0.151 4.151 5 C 0.127 3.873 6 N -0.659 5.659 7 C 0.512 3.488 8 O -0.538 6.538 9 C 0.032 3.968 10 N -0.526 5.526 11 C 0.070 3.930 12 C -0.136 4.136 13 C 0.232 3.768 14 O -0.590 6.590 15 C -0.558 4.558 16 H 0.062 0.938 17 C 0.027 3.973 18 N -0.913 5.913 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.069 3.931 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.105 4.105 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.425 0.575 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.371 0.629 40 H 0.268 0.732 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.406 -16.090 -9.213 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.138 4.138 4 C -0.171 4.171 5 C 0.033 3.967 6 N -0.306 5.306 7 C 0.300 3.700 8 O -0.413 6.413 9 C -0.099 4.099 10 N -0.251 5.251 11 C -0.058 4.058 12 C -0.175 4.175 13 C 0.192 3.808 14 O -0.398 6.398 15 C -0.596 4.596 16 H 0.080 0.920 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.058 4.058 24 C -0.119 4.119 25 C -0.170 4.170 26 C -0.123 4.123 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.265 0.735 33 H 0.106 0.894 34 H 0.149 0.851 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.259 -15.091 -9.482 25.516 hybrid contribution 1.992 -0.247 1.249 2.364 sum -16.268 -15.339 -8.233 23.826 Atomic orbital electron populations 1.20786 0.89179 1.03660 1.02860 1.20228 0.97627 0.92655 1.00544 1.21101 0.93097 0.98827 1.00806 1.21378 0.95226 0.97878 1.02642 1.17804 0.82759 0.94169 1.01987 1.43410 1.04544 1.21089 1.61507 1.21112 0.90732 0.81352 0.76789 1.90679 1.70285 1.38181 1.42142 1.22275 0.90276 0.93388 1.03975 1.63208 1.18581 1.33148 1.10122 1.22535 0.96757 0.99247 0.87238 1.23112 0.94354 1.00057 0.99997 1.19832 0.91731 0.78880 0.90331 1.86149 1.86314 1.23228 1.44074 1.21779 0.94359 1.38814 1.04672 0.91987 1.25756 1.02821 0.93889 0.94888 1.69844 1.37680 1.38954 1.08786 0.85554 0.79802 0.78687 0.77204 1.19926 1.21032 1.19315 1.22906 0.85444 0.99072 0.98370 1.19956 0.94580 0.94078 1.03301 1.20801 0.99915 0.92608 1.03632 1.21061 0.92560 0.98532 1.00182 0.90779 0.91221 0.89999 0.85384 0.86481 0.73531 0.89417 0.85090 0.93498 0.93390 0.92893 0.92982 0.78103 0.92317 0.91291 0.91324 0.89326 0.91596 0.89701 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.23 0.71 -0.63 16 2 C -0.11 -2.08 5.88 -19.84 -0.12 -2.20 16 3 C -0.12 -2.86 9.69 22.25 0.22 -2.64 16 4 C -0.15 -4.35 8.72 22.39 0.20 -4.16 16 5 C 0.13 3.14 6.41 38.15 0.24 3.39 16 6 N -0.66 -14.63 4.97 -303.51 -1.51 -16.14 16 7 C 0.51 15.27 7.28 87.66 0.64 15.91 16 8 O -0.54 -21.12 12.71 -3.05 -0.04 -21.16 16 9 C 0.03 0.89 5.03 85.56 0.43 1.32 16 10 N -0.53 -20.63 4.85 -890.10 -4.32 -24.95 16 11 C 0.07 2.97 5.65 86.65 0.49 3.46 16 12 C -0.14 -6.49 5.37 31.77 0.17 -6.32 16 13 C 0.23 11.69 0.87 -10.16 -0.01 11.68 16 14 O -0.59 -32.47 13.16 -148.98 -1.96 -34.43 16 15 C -0.56 -29.57 8.27 25.60 0.21 -29.35 16 16 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 17 C 0.03 1.43 5.29 84.65 0.45 1.87 16 18 N -0.91 -49.66 10.75 21.45 0.23 -49.43 16 19 Si 0.96 41.75 29.54 68.60 2.03 43.77 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.07 2.90 5.86 86.78 0.51 3.40 16 24 C -0.12 -2.19 5.90 -19.74 -0.12 -2.30 16 25 C -0.11 -1.29 9.44 71.24 0.67 -0.62 16 26 C -0.11 -1.79 9.35 22.25 0.21 -1.58 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.12 4.07 5.79 -2.91 -0.02 4.05 16 32 H 0.43 6.04 7.42 -92.70 -0.69 5.35 16 33 H 0.09 2.07 7.96 -2.39 -0.02 2.05 16 34 H 0.13 2.88 8.07 -2.39 -0.02 2.86 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.83 7.31 -2.39 -0.02 1.82 16 37 H 0.05 2.76 7.54 -2.38 -0.02 2.74 16 38 H 0.05 2.46 8.03 -2.39 -0.02 2.44 16 39 H 0.37 20.75 7.56 -74.05 -0.56 20.19 16 40 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.07 2.57 7.70 -2.38 -0.02 2.56 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.74 7.00 -2.39 -0.02 0.73 16 45 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 46 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -68.98 369.73 -0.91 -69.89 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.25 Total: 41.22 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.90 Total: -8.78 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.60 Total: -90.52 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -2.00 Total: -55.59 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.98 -0.91 -69.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds