Wall clock time and date at job start Tue Mar 31 2020 13:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38300 * 119.92721 * 2 1 4 4 C 1.38092 * 120.06762 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.92870 * 0.02562 * 4 3 2 6 6 N 1.39931 * 120.06950 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00073 * 325.44937 * 6 5 4 8 8 O 1.21290 * 120.00267 * 4.21967 * 7 6 5 9 9 C 1.50700 * 119.99868 * 184.23188 * 7 6 5 10 10 N 1.46901 * 109.47092 * 179.97438 * 9 7 6 11 11 C 1.48535 * 111.00113 * 52.60003 * 10 9 7 12 12 C 1.54939 * 103.22725 * 159.71991 * 11 10 9 13 13 C 1.54597 * 102.91959 * 322.58740 * 12 11 10 14 14 O 1.42907 * 110.38913 * 262.99462 * 13 12 11 15 15 C 1.50695 * 110.30591 * 140.87556 * 13 12 11 16 16 H 1.08008 * 119.99824 * 248.69492 * 15 13 12 17 17 C 1.37875 * 120.00299 * 68.69742 * 15 13 12 18 18 N 1.31513 * 120.00143 * 354.64446 * 17 15 13 19 19 Si 1.86805 * 120.00287 * 174.64593 * 17 15 13 20 20 H 1.48500 * 109.46883 * 94.99641 * 19 17 15 21 21 H 1.48493 * 109.47425 * 214.99692 * 19 17 15 22 22 H 1.48505 * 109.46772 * 334.99964 * 19 17 15 23 23 C 1.47903 * 110.99783 * 169.99417 * 10 9 7 24 24 C 1.38851 * 119.86228 * 0.02562 * 5 4 3 25 25 C 1.50697 * 120.03523 * 179.97438 * 24 5 4 26 26 C 1.38130 * 119.92684 * 359.97438 * 24 5 4 27 27 H 1.08996 * 109.47537 * 89.99814 * 1 2 3 28 28 H 1.09003 * 109.47072 * 210.00384 * 1 2 3 29 29 H 1.09001 * 109.46755 * 329.99324 * 1 2 3 30 30 H 1.08000 * 119.97017 * 0.25449 * 3 2 1 31 31 H 1.08003 * 120.03534 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99830 * 145.44058 * 6 5 4 33 33 H 1.09003 * 109.46869 * 299.99078 * 9 7 6 34 34 H 1.08992 * 109.47485 * 59.99281 * 9 7 6 35 35 H 1.08996 * 110.66498 * 278.15538 * 11 10 9 36 36 H 1.09001 * 110.66601 * 41.28348 * 11 10 9 37 37 H 1.08998 * 110.72423 * 204.22719 * 12 11 10 38 38 H 1.08997 * 110.87455 * 81.01260 * 12 11 10 39 39 H 0.96691 * 114.00277 * 295.76736 * 14 13 12 40 40 H 0.96997 * 120.00439 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.92281 * 333.51190 * 23 10 9 42 42 H 1.09008 * 109.91559 * 94.60977 * 23 10 9 43 43 H 1.09003 * 109.46718 * 89.99676 * 25 24 5 44 44 H 1.09007 * 109.46952 * 209.99197 * 25 24 5 45 45 H 1.08992 * 109.47368 * 330.00044 * 25 24 5 46 46 H 1.08001 * 119.96521 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6732 -0.0001 0.0016 7 6 6.3476 0.9616 -0.6594 8 8 5.7441 1.8696 -1.1907 9 6 7.8516 0.9084 -0.7385 10 7 8.3425 2.0600 -1.5071 11 6 7.7980 3.3319 -0.9666 12 6 8.7842 4.3978 -1.5069 13 6 10.1502 3.6787 -1.4233 14 8 10.8343 4.0471 -0.2239 15 6 10.9917 4.0128 -2.6280 16 1 11.2088 3.2517 -3.3629 17 6 11.4844 5.2900 -2.7920 18 7 11.1346 6.2423 -1.9551 19 14 12.6489 5.6679 -4.2029 20 1 11.8757 6.1996 -5.3539 21 1 13.6444 6.6794 -3.7659 22 1 13.3521 4.4251 -4.6107 23 6 9.8135 2.1761 -1.4065 24 6 3.5782 -1.2017 -0.0005 25 6 4.3293 -2.5081 -0.0011 26 6 2.1969 -1.1983 -0.0011 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6554 2.1329 0.0042 31 1 4.1162 2.1383 0.0001 32 1 6.1578 -0.6921 0.4782 33 1 8.2696 0.9379 0.2677 34 1 8.1571 -0.0142 -1.2320 35 1 6.7919 3.5115 -1.3454 36 1 7.8034 3.3202 0.1234 37 1 8.7765 5.2859 -0.8751 38 1 8.5478 4.6580 -2.5386 39 1 11.0720 4.9832 -0.1784 40 1 11.4809 7.1409 -2.0707 41 1 10.1585 1.7287 -0.4745 42 1 10.2841 1.6777 -2.2541 43 1 4.5100 -2.8237 1.0264 44 1 3.7389 -3.2664 -0.5156 45 1 5.2821 -2.3792 -0.5145 46 1 1.6551 -2.1326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:56 Heat of formation + Delta-G solvation = -50.258630 kcal Electronic energy + Delta-G solvation = -26648.715619 eV Core-core repulsion = 22924.190610 eV Total energy + Delta-G solvation = -3724.525009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75964 -39.12191 -37.81806 -35.32565 -34.59041 -32.89828 -32.01056 -31.73735 -30.30961 -28.00646 -27.49944 -27.08973 -25.55189 -23.98051 -22.68422 -21.09728 -20.43686 -20.17814 -19.39435 -17.80427 -17.12025 -16.87523 -15.76857 -15.41341 -15.23809 -14.99452 -14.80619 -14.28041 -14.22532 -14.03239 -13.81162 -13.51289 -13.42856 -13.28861 -13.04729 -12.79620 -12.39749 -12.24573 -12.00988 -11.92946 -11.65843 -11.56809 -11.31488 -11.23222 -11.16480 -10.85497 -10.56831 -10.46705 -10.35597 -10.12272 -9.90870 -9.47359 -9.10103 -8.82980 -8.58112 -8.06601 -8.00670 -7.80508 -6.16504 -4.21535 1.14052 1.30082 2.63373 2.93919 3.26550 3.33752 3.38067 3.64375 4.35345 4.55653 4.58995 4.67207 4.72860 4.85069 5.05058 5.10643 5.11417 5.27640 5.33156 5.39097 5.41153 5.42205 5.46139 5.63288 5.67944 5.76968 5.78410 5.97892 6.10542 6.16210 6.20955 6.30138 6.31502 6.38195 6.42543 6.51343 6.72144 6.94685 6.98207 7.17168 7.27038 7.31872 7.56153 7.67084 7.68971 7.88683 8.17032 8.21375 8.78874 9.45366 9.55100 10.91293 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002542 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.850718 B =11014.158889 C =11433.954535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.147 3.853 6 N -0.678 5.678 7 C 0.513 3.487 8 O -0.495 6.495 9 C 0.029 3.971 10 N -0.498 5.498 11 C 0.029 3.971 12 C -0.121 4.121 13 C 0.243 3.757 14 O -0.596 6.596 15 C -0.527 4.527 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.053 3.947 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.105 4.105 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.141 0.859 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.385 0.615 40 H 0.266 0.734 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 -15.250 6.809 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.126 4.126 4 C -0.134 4.134 5 C 0.052 3.948 6 N -0.325 5.325 7 C 0.301 3.699 8 O -0.368 6.368 9 C -0.103 4.103 10 N -0.223 5.223 11 C -0.098 4.098 12 C -0.159 4.159 13 C 0.203 3.797 14 O -0.406 6.406 15 C -0.565 4.565 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.171 4.171 26 C -0.123 4.123 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.244 0.756 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.995 -15.097 6.017 23.515 hybrid contribution 1.211 0.605 0.191 1.367 sum -15.784 -14.491 6.209 22.309 Atomic orbital electron populations 1.20744 0.91309 1.02499 1.02164 1.19868 0.96007 0.93116 1.01539 1.20939 0.93656 0.97573 1.00385 1.21345 0.94135 0.98023 0.99891 1.17585 0.82556 0.93479 1.01154 1.43611 1.04601 1.31124 1.53162 1.20989 0.90599 0.81191 0.77093 1.90666 1.69766 1.32532 1.43811 1.22229 0.90196 0.98959 0.98890 1.64830 1.07131 1.01355 1.48992 1.23541 1.00665 0.89660 0.95902 1.23028 0.95693 0.96385 1.00831 1.19329 0.88793 0.87674 0.83905 1.86053 1.79351 1.33248 1.41966 1.21701 1.31773 0.96035 1.07007 0.91899 1.25014 0.95989 0.95888 0.96516 1.69608 1.44400 1.02093 1.37975 0.86445 0.80635 0.78128 0.81978 1.20645 1.21113 1.19765 1.22946 0.85624 0.98973 0.99848 1.19659 0.93986 0.93842 1.04067 1.20722 1.00163 0.93977 1.02189 1.20656 0.92603 0.97547 1.01540 0.91374 0.91808 0.91667 0.85888 0.84118 0.75602 0.91889 0.87961 0.88827 0.95735 0.91878 0.91361 0.76317 0.92365 0.94478 0.90047 0.91223 0.91211 0.91590 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.10 -1.05 5.88 -104.59 -0.62 -1.67 16 3 C -0.11 -1.23 9.69 -39.61 -0.38 -1.61 16 4 C -0.11 -1.54 8.70 -39.39 -0.34 -1.88 16 5 C 0.15 1.82 6.29 -83.69 -0.53 1.29 16 6 N -0.68 -7.80 4.75 -9.86 -0.05 -7.85 16 7 C 0.51 7.67 7.38 -10.99 -0.08 7.59 16 8 O -0.50 -9.16 10.93 5.55 0.06 -9.10 16 9 C 0.03 0.43 5.52 -4.98 -0.03 0.40 16 10 N -0.50 -9.90 5.26 -231.89 -1.22 -11.12 16 11 C 0.03 0.62 5.30 -1.90 -0.01 0.61 16 12 C -0.12 -2.94 5.64 -24.87 -0.14 -3.08 16 13 C 0.24 6.16 1.00 -90.42 -0.09 6.07 16 14 O -0.60 -15.73 12.92 -35.23 -0.46 -16.19 16 15 C -0.53 -14.37 8.07 -34.44 -0.28 -14.65 16 16 H 0.06 1.70 7.37 -52.48 -0.39 1.32 16 17 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 18 N -0.90 -24.53 10.91 55.43 0.60 -23.92 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.05 1.16 6.16 -2.76 -0.02 1.14 16 24 C -0.11 -1.16 5.90 -104.44 -0.62 -1.78 16 25 C -0.11 -0.83 9.47 36.00 0.34 -0.49 16 26 C -0.10 -1.01 9.35 -39.61 -0.37 -1.38 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.14 2.15 6.19 -52.48 -0.33 1.83 16 32 H 0.41 3.33 7.84 -40.82 -0.32 3.01 16 33 H 0.06 0.86 7.81 -51.93 -0.41 0.46 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 2.02 5.97 -51.93 -0.31 1.71 16 36 H 0.02 0.51 8.02 -51.93 -0.42 0.09 16 37 H 0.06 1.59 8.08 -51.93 -0.42 1.17 16 38 H 0.07 1.78 7.85 -51.93 -0.41 1.37 16 39 H 0.38 10.38 6.90 45.56 0.31 10.70 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 41 H 0.04 0.77 7.39 -51.93 -0.38 0.38 16 42 H 0.08 1.76 7.41 -51.92 -0.38 1.37 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 45 H 0.07 0.48 7.17 -51.93 -0.37 0.10 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -31.08 366.37 -9.77 -40.85 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.33 Total: 13.92 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.89 Total: -8.17 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.66 Total: -42.89 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.39 Total: -25.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.08 -9.77 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.411 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds