Wall clock time and date at job start Tue Mar 31 2020 13:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38300 * 119.92721 * 2 1 4 4 C 1.38092 * 120.06762 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.92870 * 0.02562 * 4 3 2 6 6 N 1.39931 * 120.06950 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00073 * 325.44937 * 6 5 4 8 8 O 1.21290 * 120.00267 * 4.21967 * 7 6 5 9 9 C 1.50700 * 119.99868 * 184.23188 * 7 6 5 10 10 N 1.46901 * 109.47092 * 179.97438 * 9 7 6 11 11 C 1.48535 * 111.00113 * 52.60003 * 10 9 7 12 12 C 1.54939 * 103.22725 * 159.71991 * 11 10 9 13 13 C 1.54597 * 102.91959 * 322.58740 * 12 11 10 14 14 O 1.42907 * 110.38913 * 262.99462 * 13 12 11 15 15 C 1.50695 * 110.30591 * 140.87556 * 13 12 11 16 16 H 1.08008 * 119.99824 * 248.69492 * 15 13 12 17 17 C 1.37875 * 120.00299 * 68.69742 * 15 13 12 18 18 N 1.31513 * 120.00143 * 354.64446 * 17 15 13 19 19 Si 1.86805 * 120.00287 * 174.64593 * 17 15 13 20 20 H 1.48500 * 109.46883 * 94.99641 * 19 17 15 21 21 H 1.48493 * 109.47425 * 214.99692 * 19 17 15 22 22 H 1.48505 * 109.46772 * 334.99964 * 19 17 15 23 23 C 1.47903 * 110.99783 * 169.99417 * 10 9 7 24 24 C 1.38851 * 119.86228 * 0.02562 * 5 4 3 25 25 C 1.50697 * 120.03523 * 179.97438 * 24 5 4 26 26 C 1.38130 * 119.92684 * 359.97438 * 24 5 4 27 27 H 1.08996 * 109.47537 * 89.99814 * 1 2 3 28 28 H 1.09003 * 109.47072 * 210.00384 * 1 2 3 29 29 H 1.09001 * 109.46755 * 329.99324 * 1 2 3 30 30 H 1.08000 * 119.97017 * 0.25449 * 3 2 1 31 31 H 1.08003 * 120.03534 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99830 * 145.44058 * 6 5 4 33 33 H 1.09003 * 109.46869 * 299.99078 * 9 7 6 34 34 H 1.08992 * 109.47485 * 59.99281 * 9 7 6 35 35 H 1.08996 * 110.66498 * 278.15538 * 11 10 9 36 36 H 1.09001 * 110.66601 * 41.28348 * 11 10 9 37 37 H 1.08998 * 110.72423 * 204.22719 * 12 11 10 38 38 H 1.08997 * 110.87455 * 81.01260 * 12 11 10 39 39 H 0.96691 * 114.00277 * 295.76736 * 14 13 12 40 40 H 0.96997 * 120.00439 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.92281 * 333.51190 * 23 10 9 42 42 H 1.09008 * 109.91559 * 94.60977 * 23 10 9 43 43 H 1.09003 * 109.46718 * 89.99676 * 25 24 5 44 44 H 1.09007 * 109.46952 * 209.99197 * 25 24 5 45 45 H 1.08992 * 109.47368 * 330.00044 * 25 24 5 46 46 H 1.08001 * 119.96521 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6732 -0.0001 0.0016 7 6 6.3476 0.9616 -0.6594 8 8 5.7441 1.8696 -1.1907 9 6 7.8516 0.9084 -0.7385 10 7 8.3425 2.0600 -1.5071 11 6 7.7980 3.3319 -0.9666 12 6 8.7842 4.3978 -1.5069 13 6 10.1502 3.6787 -1.4233 14 8 10.8343 4.0471 -0.2239 15 6 10.9917 4.0128 -2.6280 16 1 11.2088 3.2517 -3.3629 17 6 11.4844 5.2900 -2.7920 18 7 11.1346 6.2423 -1.9551 19 14 12.6489 5.6679 -4.2029 20 1 11.8757 6.1996 -5.3539 21 1 13.6444 6.6794 -3.7659 22 1 13.3521 4.4251 -4.6107 23 6 9.8135 2.1761 -1.4065 24 6 3.5782 -1.2017 -0.0005 25 6 4.3293 -2.5081 -0.0011 26 6 2.1969 -1.1983 -0.0011 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6554 2.1329 0.0042 31 1 4.1162 2.1383 0.0001 32 1 6.1578 -0.6921 0.4782 33 1 8.2696 0.9379 0.2677 34 1 8.1571 -0.0142 -1.2320 35 1 6.7919 3.5115 -1.3454 36 1 7.8034 3.3202 0.1234 37 1 8.7765 5.2859 -0.8751 38 1 8.5478 4.6580 -2.5386 39 1 11.0720 4.9832 -0.1784 40 1 11.4809 7.1409 -2.0707 41 1 10.1585 1.7287 -0.4745 42 1 10.2841 1.6777 -2.2541 43 1 4.5100 -2.8237 1.0264 44 1 3.7389 -3.2664 -0.5156 45 1 5.2821 -2.3792 -0.5145 46 1 1.6551 -2.1326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:56 Heat of formation + Delta-G solvation = -72.096605 kcal Electronic energy + Delta-G solvation = -26649.662585 eV Core-core repulsion = 22924.190610 eV Total energy + Delta-G solvation = -3725.471974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80844 -40.33982 -39.31573 -36.62498 -36.09322 -34.09909 -33.69111 -32.74763 -31.78080 -29.84281 -28.48601 -28.06453 -26.82374 -25.64089 -23.63021 -22.47969 -21.54066 -21.34711 -21.19285 -19.16392 -18.75786 -18.02645 -17.00821 -16.85724 -16.76492 -16.44149 -16.08500 -15.73087 -15.48267 -15.10504 -14.99625 -14.66445 -14.51768 -14.19831 -14.07361 -13.98333 -13.80434 -13.40018 -13.35149 -13.16721 -13.00470 -12.86327 -12.72023 -12.59668 -12.45246 -12.33355 -12.23263 -12.11120 -12.02125 -11.90360 -11.18173 -11.10846 -10.71175 -10.59774 -10.04404 -9.66068 -9.38230 -8.91415 -8.21663 -6.34350 0.27974 0.45404 1.40647 1.42461 1.53023 1.53306 1.91729 2.39702 2.80568 2.99097 3.12885 3.61814 3.89273 3.89678 3.94885 4.07596 4.23418 4.24699 4.29869 4.38784 4.40514 4.45710 4.49127 4.57091 4.61859 4.71486 4.82885 4.85443 4.88221 4.90555 5.04859 5.07840 5.12986 5.28979 5.31106 5.37658 5.39997 5.48503 5.57748 5.60385 5.71206 5.75696 5.90981 6.04217 6.12850 6.14310 6.43506 6.69581 7.13421 7.35533 7.42715 8.84756 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002542 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.850718 B =11014.158889 C =11433.954535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.123 4.123 4 C -0.139 4.139 5 C 0.122 3.878 6 N -0.658 5.658 7 C 0.513 3.487 8 O -0.539 6.539 9 C 0.028 3.972 10 N -0.509 5.509 11 C 0.048 3.952 12 C -0.115 4.115 13 C 0.227 3.773 14 O -0.600 6.600 15 C -0.551 4.551 16 H 0.059 0.941 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.962 3.038 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.269 1.269 23 C 0.063 3.937 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.109 4.109 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.425 0.575 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 -18.189 7.046 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.306 5.306 7 C 0.302 3.698 8 O -0.415 6.415 9 C -0.103 4.103 10 N -0.234 5.234 11 C -0.079 4.079 12 C -0.154 4.154 13 C 0.187 3.813 14 O -0.410 6.410 15 C -0.589 4.589 16 H 0.077 0.923 17 C -0.176 4.176 18 N -0.559 5.559 19 Si 0.788 3.212 20 H -0.205 1.205 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.064 4.064 24 C -0.111 4.111 25 C -0.170 4.170 26 C -0.127 4.127 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.229 0.771 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.765 -18.091 6.287 26.123 hybrid contribution 1.342 1.477 0.155 2.002 sum -16.423 -16.614 6.442 24.233 Atomic orbital electron populations 1.20801 0.89165 1.03701 1.02917 1.20244 0.97640 0.92656 0.99955 1.21101 0.93126 0.98865 1.01113 1.21283 0.95144 0.97634 1.01901 1.17753 0.82705 0.93984 1.02800 1.43316 1.04534 1.30530 1.52175 1.20993 0.90623 0.81245 0.76975 1.90662 1.70440 1.34406 1.45996 1.22369 0.90178 0.97967 0.99770 1.64713 1.05913 1.02129 1.50627 1.23265 0.99348 0.89582 0.95733 1.22840 0.96819 0.96771 0.98959 1.19587 0.88523 0.90157 0.83056 1.86042 1.79593 1.32732 1.42584 1.21982 1.32726 0.96391 1.07849 0.92327 1.25753 0.97288 0.95742 0.98863 1.69697 1.44843 1.02297 1.39064 0.85484 0.78691 0.77997 0.79062 1.20520 1.20489 1.19301 1.22764 0.86874 0.96307 1.00494 1.20025 0.94542 0.94236 1.02337 1.20810 1.00023 0.92532 1.03617 1.21077 0.92602 0.98553 1.00448 0.90708 0.89964 0.91191 0.85338 0.86987 0.73538 0.89878 0.84647 0.89362 0.95435 0.93699 0.93925 0.77071 0.92185 0.93244 0.89956 0.89358 0.89755 0.91449 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 2 C -0.10 -1.93 5.88 -19.84 -0.12 -2.05 16 3 C -0.12 -2.87 9.69 22.25 0.22 -2.66 16 4 C -0.14 -3.90 8.70 22.39 0.19 -3.71 16 5 C 0.12 2.92 6.29 38.15 0.24 3.16 16 6 N -0.66 -14.28 4.75 -303.49 -1.44 -15.72 16 7 C 0.51 15.01 7.38 87.66 0.65 15.66 16 8 O -0.54 -20.48 10.93 -3.06 -0.03 -20.51 16 9 C 0.03 0.78 5.52 85.56 0.47 1.25 16 10 N -0.51 -19.94 5.26 -887.57 -4.67 -24.61 16 11 C 0.05 2.08 5.30 86.65 0.46 2.54 16 12 C -0.11 -5.82 5.64 31.80 0.18 -5.64 16 13 C 0.23 11.66 1.00 -10.66 -0.01 11.65 16 14 O -0.60 -32.14 12.92 -148.98 -1.92 -34.06 16 15 C -0.55 -30.50 8.07 25.60 0.21 -30.29 16 16 H 0.06 3.21 7.37 -2.91 -0.02 3.18 16 17 C 0.02 1.25 5.26 84.65 0.45 1.69 16 18 N -0.92 -50.98 10.91 21.45 0.23 -50.74 16 19 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C 0.06 2.70 6.16 86.44 0.53 3.23 16 24 C -0.11 -2.00 5.90 -19.74 -0.12 -2.11 16 25 C -0.11 -1.26 9.47 71.24 0.67 -0.59 16 26 C -0.11 -1.80 9.35 22.25 0.21 -1.60 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.69 16 29 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.11 3.73 6.19 -2.91 -0.02 3.71 16 32 H 0.43 5.89 7.84 -92.71 -0.73 5.16 16 33 H 0.08 2.05 7.81 -2.39 -0.02 2.03 16 34 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.09 3.96 5.97 -2.39 -0.01 3.94 16 36 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 37 H 0.04 2.36 8.08 -2.39 -0.02 2.35 16 38 H 0.04 2.32 7.85 -2.39 -0.02 2.30 16 39 H 0.38 20.97 6.90 -74.06 -0.51 20.46 16 40 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 42 H 0.08 3.49 7.41 -2.38 -0.02 3.47 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 45 H 0.07 0.75 7.17 -2.39 -0.02 0.73 16 46 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -69.07 366.37 -1.10 -70.16 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.23 Total: 40.06 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 4.95 Total: -10.06 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -5.88 Total: -91.07 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -1.96 Total: -54.57 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.07 -1.10 -70.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.932 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds