Wall clock time and date at job start Tue Mar 31 2020 12:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46875 * 299.99389 * 3 2 1 6 6 H 1.48499 * 109.47146 * 59.99562 * 3 2 1 7 7 C 1.37881 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99478 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00211 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.52507 * 299.92226 * 9 7 2 11 11 C 1.53042 * 109.50011 * 179.83331 * 9 7 2 12 12 C 1.53041 * 109.54053 * 178.68451 * 11 9 7 13 13 C 1.52758 * 109.38088 * 61.24039 * 12 11 9 14 14 N 1.46925 * 109.01099 * 305.58586 * 13 12 11 15 15 C 1.34774 * 120.63271 * 233.58254 * 14 13 12 16 16 O 1.21588 * 119.99903 * 184.74461 * 15 14 13 17 17 N 1.34776 * 120.00241 * 4.75045 * 15 14 13 18 18 C 1.46491 * 120.00351 * 174.88712 * 17 15 14 19 19 H 1.09000 * 109.67904 * 34.48357 * 18 17 15 20 20 C 1.53400 * 109.68546 * 154.99675 * 18 17 15 21 21 C 1.53120 * 109.42321 * 169.32373 * 20 18 17 22 22 C 1.53334 * 109.53724 * 290.01665 * 21 20 18 23 23 C 1.50925 * 108.42326 * 50.06085 * 22 21 20 24 24 O 1.33831 * 127.80051 * 162.92946 * 23 22 21 25 25 C 1.34516 * 109.41962 * 179.97438 * 24 23 22 26 26 C 1.34773 * 108.48490 * 0.38377 * 25 24 23 27 27 C 1.34893 * 123.89994 * 343.23381 * 23 22 21 28 28 C 1.46930 * 118.73790 * 53.31490 * 14 13 12 29 29 H 0.97003 * 119.99927 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.45655 * 298.70804 * 11 9 7 31 31 H 1.09000 * 109.45353 * 58.67703 * 11 9 7 32 32 H 1.08990 * 109.49604 * 181.31962 * 12 11 9 33 33 H 1.08999 * 109.49563 * 301.41557 * 12 11 9 34 34 H 1.09003 * 109.50693 * 185.70509 * 13 12 11 35 35 H 1.08999 * 109.43650 * 65.42690 * 13 12 11 36 36 H 0.97004 * 119.99495 * 354.88185 * 17 15 14 37 37 H 1.09006 * 109.47796 * 49.33988 * 20 18 17 38 38 H 1.08999 * 109.48058 * 289.31157 * 20 18 17 39 39 H 1.09003 * 109.46053 * 169.99145 * 21 20 18 40 40 H 1.08997 * 109.46068 * 50.03840 * 21 20 18 41 41 H 1.09003 * 109.67032 * 290.33094 * 22 21 20 42 42 H 1.08994 * 109.67447 * 169.79529 * 22 21 20 43 43 H 1.07997 * 125.76009 * 180.08548 * 25 24 23 44 44 H 1.07994 * 126.68189 * 179.73161 * 26 25 24 45 45 H 1.09002 * 109.58769 * 66.42273 * 28 14 13 46 46 H 1.09002 * 109.58797 * 186.71456 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5582 0.8907 11 6 2.2450 -3.6629 -0.0030 12 6 1.4811 -4.9886 0.0301 13 6 0.6027 -5.0987 -1.2148 14 7 -0.2556 -3.9094 -1.3017 15 6 -1.5922 -4.0343 -1.4207 16 8 -2.2835 -3.0466 -1.5784 17 7 -2.1627 -5.2541 -1.3648 18 6 -3.6219 -5.3818 -1.3815 19 1 -4.0513 -4.6032 -2.0119 20 6 -4.0137 -6.7615 -1.9256 21 6 -5.5095 -6.9938 -1.6950 22 6 -5.7744 -7.1806 -0.1963 23 6 -5.1117 -6.0484 0.5499 24 8 -5.3430 -5.6471 1.8055 25 6 -4.5448 -4.6041 2.0959 26 6 -3.7956 -4.3243 1.0111 27 6 -4.1592 -5.2537 0.0199 28 6 0.3705 -2.5811 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8543 -3.6172 -0.9057 31 1 2.8889 -3.5930 0.8737 32 1 2.1898 -5.8163 0.0512 33 1 0.8528 -5.0242 0.9200 34 1 -0.0173 -5.9925 -1.1449 35 1 1.2350 -5.1586 -2.1007 36 1 -1.6069 -6.0475 -1.3136 37 1 -3.4422 -7.5321 -1.4080 38 1 -3.7994 -6.8054 -2.9934 39 1 -5.8256 -7.8871 -2.2338 40 1 -6.0710 -6.1332 -2.0585 41 1 -5.3573 -8.1318 0.1342 42 1 -6.8480 -7.1650 -0.0087 43 1 -4.5133 -4.0764 3.0376 44 1 -3.0589 -3.5399 0.9207 45 1 0.9835 -2.4315 -2.1392 46 1 -0.4028 -1.8141 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595441574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:41 Heat of formation + Delta-G solvation = -19.297438 kcal Electronic energy + Delta-G solvation = -27856.448029 eV Core-core repulsion = 24133.265598 eV Total energy + Delta-G solvation = -3723.182431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.54572 -39.73395 -37.64844 -36.46712 -33.94896 -33.24879 -32.28937 -31.61250 -29.84381 -29.38688 -28.26291 -25.05339 -24.56386 -23.11085 -22.33099 -21.78639 -21.16684 -20.01102 -19.11663 -18.58994 -17.52966 -17.06186 -16.29588 -16.10555 -15.55185 -14.96003 -14.64092 -14.51500 -14.43257 -13.93893 -13.79658 -13.67283 -13.43145 -12.92396 -12.70246 -12.59539 -12.54132 -12.23108 -12.21066 -12.00509 -11.90480 -11.36127 -11.11612 -10.98470 -10.87886 -10.83398 -10.46212 -10.36627 -10.20798 -9.85659 -9.48501 -9.32258 -9.07788 -8.91994 -8.74251 -8.39928 -8.14302 -7.60421 -5.96615 -4.05263 1.86319 2.78073 3.06590 3.30883 3.38268 3.40634 3.43348 3.91046 4.38563 4.47607 4.54309 4.60824 4.78595 4.94333 5.06987 5.25350 5.29680 5.33702 5.36135 5.39831 5.49111 5.53521 5.63603 5.64615 5.76367 5.81566 5.99523 6.06587 6.14807 6.19483 6.31824 6.33800 6.33917 6.61756 6.69444 6.77510 6.84448 6.92651 7.01380 7.10466 7.33574 7.38490 7.55222 7.78295 7.96008 8.09460 8.43743 8.65027 8.98496 9.32354 9.60270 11.08482 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.003735 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.938506 B = 7495.418721 C = 8101.429257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.027 0.973 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.703 3.297 16 O -0.582 6.582 17 N -0.747 5.747 18 C 0.233 3.767 19 H 0.097 0.903 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.033 4.033 23 C -0.026 4.026 24 O -0.176 6.176 25 C -0.060 4.060 26 C -0.171 4.171 27 C -0.182 4.182 28 C 0.130 3.870 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.390 0.610 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.201 0.799 44 H 0.152 0.848 45 H 0.037 0.963 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 -17.653 -1.768 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.404 3.596 16 O -0.459 6.459 17 N -0.405 5.405 18 C 0.127 3.873 19 H 0.115 0.885 20 C -0.165 4.165 21 C -0.149 4.149 22 C -0.070 4.070 23 C -0.077 4.077 24 O -0.072 6.072 25 C -0.127 4.127 26 C -0.190 4.190 27 C -0.185 4.185 28 C 0.009 3.991 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.218 0.782 44 H 0.169 0.831 45 H 0.056 0.944 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.612 -16.882 -1.705 19.501 hybrid contribution 1.042 0.776 0.226 1.319 sum -8.569 -16.106 -1.480 18.304 Atomic orbital electron populations 1.69903 1.05696 1.26656 1.49381 1.25049 0.94864 0.99199 0.94872 0.86559 0.80054 0.83916 0.77614 1.19817 1.20972 1.21056 1.21112 0.92904 0.90147 1.51753 0.92377 1.18985 0.92606 0.92174 0.94183 0.95445 1.21607 0.98530 0.94088 1.00467 1.21870 0.98584 0.99121 0.97626 1.21387 0.93332 0.87610 0.98476 1.47782 1.03584 1.08764 1.75805 1.15931 0.82411 0.83195 0.78036 1.90920 1.61633 1.36543 1.56776 1.45322 1.06122 1.07492 1.81609 1.19033 0.79844 0.97367 0.91080 0.88511 1.21901 0.96461 0.96364 1.01769 1.21530 0.96139 1.02980 0.94234 1.20154 1.00158 0.93487 0.93191 1.22235 1.01301 1.00442 0.83700 1.83851 1.53076 1.41425 1.28881 1.24065 0.95612 0.91725 1.01265 1.21677 1.02892 1.01714 0.92762 1.20628 1.00806 0.98529 0.98494 1.22163 0.98301 0.80570 0.98033 0.92753 0.93220 0.93140 0.92392 0.92264 0.92227 0.92237 0.77427 0.91154 0.90502 0.90114 0.90812 0.89851 0.89981 0.78218 0.83061 0.94413 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 11.39 55.43 0.63 -25.14 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.17 8.56 -34.44 -0.29 -14.46 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 12 C -0.13 -2.17 6.07 -26.83 -0.16 -2.33 16 13 C 0.12 1.82 6.40 -3.93 -0.03 1.79 16 14 N -0.62 -12.66 2.98 -178.75 -0.53 -13.19 16 15 C 0.70 14.44 7.57 -86.92 -0.66 13.78 16 16 O -0.58 -14.55 15.18 5.29 0.08 -14.47 16 17 N -0.75 -11.58 4.93 -59.65 -0.29 -11.87 16 18 C 0.23 3.30 2.86 -68.91 -0.20 3.10 16 19 H 0.10 1.59 7.50 -51.93 -0.39 1.20 16 20 C -0.13 -1.19 5.41 -26.46 -0.14 -1.33 16 21 C -0.11 -0.86 5.89 -26.50 -0.16 -1.02 16 22 C -0.03 -0.29 6.30 -27.60 -0.17 -0.46 16 23 C -0.03 -0.34 7.22 -35.39 -0.26 -0.60 16 24 O -0.18 -2.53 10.65 6.38 0.07 -2.46 16 25 C -0.06 -0.88 12.10 29.50 0.36 -0.52 16 26 C -0.17 -2.98 10.43 -39.90 -0.42 -3.39 16 27 C -0.18 -2.79 5.62 -104.93 -0.59 -3.38 16 28 C 0.13 3.19 5.39 -3.70 -0.02 3.17 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.98 6.06 -40.82 -0.25 4.73 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.20 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.15 3.14 7.48 -52.49 -0.39 2.74 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.12 3.52 5.16 -51.93 -0.27 3.25 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -33.08 360.12 -9.86 -42.94 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.04 Total: 7.94 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.17 Total: -5.54 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.20 Total: -50.20 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.15 Total: -16.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.08 -9.86 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595441574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.644 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds