Wall clock time and date at job start Tue Mar 31 2020 12:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46875 * 299.99389 * 3 2 1 6 6 H 1.48499 * 109.47146 * 59.99562 * 3 2 1 7 7 C 1.37881 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99478 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00211 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.52507 * 299.92226 * 9 7 2 11 11 C 1.53042 * 109.50011 * 179.83331 * 9 7 2 12 12 C 1.53041 * 109.54053 * 178.68451 * 11 9 7 13 13 C 1.52758 * 109.38088 * 61.24039 * 12 11 9 14 14 N 1.46925 * 109.01099 * 305.58586 * 13 12 11 15 15 C 1.34774 * 120.63271 * 233.58254 * 14 13 12 16 16 O 1.21588 * 119.99903 * 184.74461 * 15 14 13 17 17 N 1.34776 * 120.00241 * 4.75045 * 15 14 13 18 18 C 1.46491 * 120.00351 * 174.88712 * 17 15 14 19 19 H 1.09000 * 109.67904 * 34.48357 * 18 17 15 20 20 C 1.53400 * 109.68546 * 154.99675 * 18 17 15 21 21 C 1.53120 * 109.42321 * 169.32373 * 20 18 17 22 22 C 1.53334 * 109.53724 * 290.01665 * 21 20 18 23 23 C 1.50925 * 108.42326 * 50.06085 * 22 21 20 24 24 O 1.33831 * 127.80051 * 162.92946 * 23 22 21 25 25 C 1.34516 * 109.41962 * 179.97438 * 24 23 22 26 26 C 1.34773 * 108.48490 * 0.38377 * 25 24 23 27 27 C 1.34893 * 123.89994 * 343.23381 * 23 22 21 28 28 C 1.46930 * 118.73790 * 53.31490 * 14 13 12 29 29 H 0.97003 * 119.99927 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.45655 * 298.70804 * 11 9 7 31 31 H 1.09000 * 109.45353 * 58.67703 * 11 9 7 32 32 H 1.08990 * 109.49604 * 181.31962 * 12 11 9 33 33 H 1.08999 * 109.49563 * 301.41557 * 12 11 9 34 34 H 1.09003 * 109.50693 * 185.70509 * 13 12 11 35 35 H 1.08999 * 109.43650 * 65.42690 * 13 12 11 36 36 H 0.97004 * 119.99495 * 354.88185 * 17 15 14 37 37 H 1.09006 * 109.47796 * 49.33988 * 20 18 17 38 38 H 1.08999 * 109.48058 * 289.31157 * 20 18 17 39 39 H 1.09003 * 109.46053 * 169.99145 * 21 20 18 40 40 H 1.08997 * 109.46068 * 50.03840 * 21 20 18 41 41 H 1.09003 * 109.67032 * 290.33094 * 22 21 20 42 42 H 1.08994 * 109.67447 * 169.79529 * 22 21 20 43 43 H 1.07997 * 125.76009 * 180.08548 * 25 24 23 44 44 H 1.07994 * 126.68189 * 179.73161 * 26 25 24 45 45 H 1.09002 * 109.58769 * 66.42273 * 28 14 13 46 46 H 1.09002 * 109.58797 * 186.71456 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5582 0.8907 11 6 2.2450 -3.6629 -0.0030 12 6 1.4811 -4.9886 0.0301 13 6 0.6027 -5.0987 -1.2148 14 7 -0.2556 -3.9094 -1.3017 15 6 -1.5922 -4.0343 -1.4207 16 8 -2.2835 -3.0466 -1.5784 17 7 -2.1627 -5.2541 -1.3648 18 6 -3.6219 -5.3818 -1.3815 19 1 -4.0513 -4.6032 -2.0119 20 6 -4.0137 -6.7615 -1.9256 21 6 -5.5095 -6.9938 -1.6950 22 6 -5.7744 -7.1806 -0.1963 23 6 -5.1117 -6.0484 0.5499 24 8 -5.3430 -5.6471 1.8055 25 6 -4.5448 -4.6041 2.0959 26 6 -3.7956 -4.3243 1.0111 27 6 -4.1592 -5.2537 0.0199 28 6 0.3705 -2.5811 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8543 -3.6172 -0.9057 31 1 2.8889 -3.5930 0.8737 32 1 2.1898 -5.8163 0.0512 33 1 0.8528 -5.0242 0.9200 34 1 -0.0173 -5.9925 -1.1449 35 1 1.2350 -5.1586 -2.1007 36 1 -1.6069 -6.0475 -1.3136 37 1 -3.4422 -7.5321 -1.4080 38 1 -3.7994 -6.8054 -2.9934 39 1 -5.8256 -7.8871 -2.2338 40 1 -6.0710 -6.1332 -2.0585 41 1 -5.3573 -8.1318 0.1342 42 1 -6.8480 -7.1650 -0.0087 43 1 -4.5133 -4.0764 3.0376 44 1 -3.0589 -3.5399 0.9207 45 1 0.9835 -2.4315 -2.1392 46 1 -0.4028 -1.8141 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595441574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:40 Heat of formation + Delta-G solvation = -40.648386 kcal Electronic energy + Delta-G solvation = -27857.373875 eV Core-core repulsion = 24133.265598 eV Total energy + Delta-G solvation = -3724.108277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.68972 -41.29838 -38.92666 -37.88820 -35.51109 -34.84901 -33.69557 -33.17129 -31.56036 -30.42923 -29.39468 -27.02934 -26.08063 -24.26902 -23.45170 -23.19625 -22.41323 -21.64211 -20.46248 -19.88888 -19.03106 -18.39909 -18.05220 -17.45222 -16.91829 -16.55302 -16.22061 -15.86677 -15.39792 -15.31810 -15.21204 -15.16515 -14.60144 -14.45469 -14.24498 -14.05117 -13.86679 -13.63526 -13.53190 -13.20976 -13.07192 -12.92350 -12.66583 -12.29463 -12.22042 -12.20707 -11.87273 -11.81613 -11.65727 -11.62386 -11.20284 -10.97292 -10.82390 -10.66695 -10.53593 -10.20189 -9.27730 -9.23689 -8.11272 -6.28809 0.75180 1.38182 1.39890 1.48218 1.52216 1.93647 2.02097 2.31063 2.40941 3.05415 3.19099 3.67952 3.81196 3.84416 4.00440 4.11573 4.15725 4.18386 4.26101 4.32162 4.45057 4.58642 4.60018 4.63353 4.72059 4.79639 4.82298 4.89508 4.96505 5.00255 5.08742 5.13984 5.22440 5.25299 5.26785 5.28842 5.30945 5.37349 5.53558 5.55478 5.64759 5.67033 5.88266 5.97285 6.16288 6.19363 6.35608 6.84608 7.16745 7.41419 7.72837 8.92021 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.003735 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.938506 B = 7495.418721 C = 8101.429257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.040 3.960 10 H -0.018 1.018 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.110 3.890 14 N -0.629 5.629 15 C 0.697 3.303 16 O -0.638 6.638 17 N -0.725 5.725 18 C 0.228 3.772 19 H 0.062 0.938 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.032 4.032 23 C -0.008 4.008 24 O -0.175 6.175 25 C -0.050 4.050 26 C -0.213 4.213 27 C -0.211 4.211 28 C 0.145 3.855 29 H 0.258 0.742 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.227 0.773 44 H 0.103 0.897 45 H 0.032 0.968 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -21.688 -2.244 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.020 3.980 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.399 3.601 16 O -0.519 6.519 17 N -0.383 5.383 18 C 0.123 3.877 19 H 0.080 0.920 20 C -0.155 4.155 21 C -0.145 4.145 22 C -0.069 4.069 23 C -0.060 4.060 24 O -0.071 6.071 25 C -0.117 4.117 26 C -0.233 4.233 27 C -0.213 4.213 28 C 0.022 3.978 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.243 0.757 44 H 0.121 0.879 45 H 0.050 0.950 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.412 -21.003 -2.177 23.118 hybrid contribution 0.949 2.030 0.410 2.278 sum -8.463 -18.973 -1.767 20.850 Atomic orbital electron populations 1.70122 1.07502 1.27082 1.50693 1.25916 0.95520 1.02998 0.94590 0.85505 0.79351 0.79411 0.77406 1.18243 1.20878 1.20886 1.21552 0.93300 0.91480 1.51019 0.91888 1.18903 0.93038 0.93856 0.92181 0.99987 1.21495 0.97603 0.94135 1.00918 1.21825 0.98932 0.98333 0.97237 1.21760 0.93536 0.86726 0.99160 1.47677 1.04172 1.08835 1.75760 1.16172 0.82269 0.84019 0.77684 1.90874 1.62977 1.38947 1.59116 1.45096 1.07137 1.06074 1.79983 1.19256 0.78373 0.99732 0.90366 0.91951 1.21918 0.98039 0.92994 1.02541 1.21599 0.94526 1.04409 0.93930 1.20497 1.01077 0.92393 0.92931 1.23131 0.99696 1.00295 0.82853 1.83890 1.52601 1.40979 1.29598 1.24397 0.94438 0.91495 1.01330 1.21496 1.03923 1.02294 0.95593 1.20765 1.02595 0.99148 0.98836 1.21540 0.96688 0.82018 0.97520 0.93279 0.92288 0.93057 0.87634 0.93671 0.88371 0.90116 0.75438 0.89199 0.89018 0.86096 0.91900 0.87096 0.87983 0.75686 0.87879 0.94995 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.44 11.39 21.45 0.24 -57.19 16 2 C 0.01 0.52 5.30 84.66 0.45 0.97 16 3 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.04 2.06 2.25 -11.46 -0.03 2.04 16 10 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 11 C -0.10 -4.10 5.11 30.62 0.16 -3.94 16 12 C -0.13 -3.79 6.07 30.53 0.19 -3.61 16 13 C 0.11 3.23 6.40 86.22 0.55 3.78 16 14 N -0.63 -26.42 2.98 -837.72 -2.49 -28.92 16 15 C 0.70 30.28 7.57 179.06 1.36 31.64 16 16 O -0.64 -34.98 15.18 -3.99 -0.06 -35.04 16 17 N -0.72 -22.58 4.93 -460.88 -2.27 -24.85 16 18 C 0.23 6.51 2.86 44.36 0.13 6.64 16 19 H 0.06 2.20 7.50 -2.39 -0.02 2.18 16 20 C -0.12 -1.83 5.41 30.77 0.17 -1.66 16 21 C -0.11 -1.23 5.89 30.75 0.18 -1.05 16 22 C -0.03 -0.43 6.30 30.03 0.19 -0.24 16 23 C -0.01 -0.21 7.22 24.99 0.18 -0.03 16 24 O -0.17 -4.81 10.65 -0.10 0.00 -4.81 16 25 C -0.05 -1.50 12.10 67.02 0.81 -0.69 16 26 C -0.21 -8.01 10.43 22.06 0.23 -7.78 16 27 C -0.21 -6.60 5.62 -20.06 -0.11 -6.71 16 28 C 0.15 7.58 5.39 86.36 0.47 8.05 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 2.11 5.57 -2.39 -0.01 2.09 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 9.55 6.06 -92.71 -0.56 8.99 16 37 H 0.09 1.11 8.10 -2.38 -0.02 1.09 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.23 5.23 8.06 -2.91 -0.02 5.21 16 44 H 0.10 4.88 7.48 -2.91 -0.02 4.86 16 45 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 4.59 5.16 -2.39 -0.01 4.58 16 Total: -1.00 -82.57 360.12 3.00 -79.58 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.42 Total: 26.49 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.13 Total: -2.60 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.52 Total: -110.96 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.06 Total: -39.85 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.57 3.00 -79.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595441574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.929 kcal (2) G-P(sol) polarization free energy of solvation -82.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds