Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00076 * 2 1 4 4 H 1.48505 * 109.47081 * 269.99683 * 3 2 1 5 5 H 1.48496 * 109.47150 * 149.99680 * 3 2 1 6 6 H 1.48507 * 109.47253 * 29.99647 * 3 2 1 7 7 C 1.37878 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99397 * 175.04211 * 7 2 1 9 9 C 1.50696 * 120.00642 * 355.05073 * 7 2 1 10 10 H 1.09006 * 109.49736 * 35.05317 * 9 7 2 11 11 C 1.53037 * 109.50031 * 155.11994 * 9 7 2 12 12 C 1.53044 * 109.53836 * 181.31811 * 11 9 7 13 13 C 1.53195 * 109.30966 * 298.63002 * 12 11 9 14 14 N 1.46930 * 108.77409 * 54.63905 * 13 12 11 15 15 C 1.34771 * 120.63449 * 126.38642 * 14 13 12 16 16 O 1.21587 * 120.00505 * 174.95318 * 15 14 13 17 17 N 1.34780 * 119.99599 * 354.95589 * 15 14 13 18 18 C 1.46507 * 119.99968 * 185.13883 * 17 15 14 19 19 H 1.09001 * 109.67883 * 325.51890 * 18 17 15 20 20 C 1.53397 * 109.68387 * 205.00203 * 18 17 15 21 21 C 1.53124 * 109.41386 * 190.67733 * 20 18 17 22 22 C 1.53335 * 109.53947 * 69.98598 * 21 20 18 23 23 C 1.50930 * 108.43239 * 309.96938 * 22 21 20 24 24 O 1.33831 * 127.80454 * 196.70804 * 23 22 21 25 25 C 1.34521 * 109.41840 * 179.97438 * 24 23 22 26 26 C 1.34772 * 108.48378 * 0.05627 * 25 24 23 27 27 C 1.34891 * 123.89669 * 16.73096 * 23 22 21 28 28 C 1.46936 * 118.76293 * 306.40833 * 14 13 12 29 29 H 0.97008 * 120.00265 * 185.04939 * 1 2 3 30 30 H 1.08999 * 109.45931 * 301.33544 * 11 9 7 31 31 H 1.09000 * 109.46235 * 61.29277 * 11 9 7 32 32 H 1.08994 * 109.49556 * 58.58654 * 12 11 9 33 33 H 1.08995 * 109.49483 * 178.68342 * 12 11 9 34 34 H 1.08997 * 109.58748 * 174.42201 * 13 12 11 35 35 H 1.08990 * 109.59054 * 294.71108 * 13 12 11 36 36 H 0.97000 * 120.00582 * 5.13993 * 17 15 14 37 37 H 1.09007 * 109.47994 * 310.66093 * 20 18 17 38 38 H 1.08999 * 109.48517 * 70.67954 * 20 18 17 39 39 H 1.08999 * 109.45648 * 190.00872 * 21 20 18 40 40 H 1.09000 * 109.45761 * 309.97984 * 21 20 18 41 41 H 1.09001 * 109.64341 * 69.65177 * 22 21 20 42 42 H 1.09000 * 109.64287 * 190.28708 * 22 21 20 43 43 H 1.08002 * 125.75938 * 180.02562 * 25 24 23 44 44 H 1.07997 * 126.67818 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.56344 * 293.78381 * 28 14 13 46 46 H 1.09007 * 109.61288 * 173.35767 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 3.5466 1.4401 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0814 -1.1959 -0.0803 9 6 1.2552 -2.4967 0.1137 10 1 0.3031 -2.4155 -0.4108 11 6 2.0871 -3.6203 -0.5088 12 6 1.3129 -4.9378 -0.4238 13 6 1.0591 -5.2822 1.0472 14 7 0.3869 -4.1447 1.6900 15 6 -0.7706 -4.3191 2.3579 16 8 -1.2696 -3.3898 2.9627 17 7 -1.3750 -5.5238 2.3556 18 6 -2.6877 -5.6859 2.9856 19 1 -2.7582 -5.0379 3.8592 20 6 -2.8803 -7.1475 3.4096 21 6 -4.3387 -7.3706 3.8195 22 6 -5.2365 -7.3018 2.5783 23 6 -4.9007 -6.0434 1.8157 24 8 -5.6274 -5.4404 0.8673 25 6 -4.9789 -4.3432 0.4369 26 6 -3.8193 -4.2385 1.1156 27 6 -3.7706 -5.3305 2.0006 28 6 0.9999 -2.8130 1.5907 29 1 -0.4851 -0.8368 0.0739 30 1 2.2906 -3.3855 -1.5535 31 1 3.0289 -3.7170 0.0315 32 1 0.3602 -4.8339 -0.9429 33 1 1.8961 -5.7329 -0.8882 34 1 0.4240 -6.1656 1.1113 35 1 2.0083 -5.4776 1.5459 36 1 -0.9409 -6.2835 1.9368 37 1 -2.6327 -7.8038 2.5752 38 1 -2.2272 -7.3703 4.2534 39 1 -4.4388 -8.3505 4.2863 40 1 -4.6390 -6.5985 4.5279 41 1 -5.0562 -8.1719 1.9470 42 1 -6.2825 -7.2772 2.8837 43 1 -5.3283 -3.6615 -0.3245 44 1 -3.0733 -3.4658 1.0028 45 1 1.9444 -2.8045 2.1348 46 1 0.3259 -2.0676 2.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595441576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = -24.543525 kcal Electronic energy + Delta-G solvation = -27843.846062 eV Core-core repulsion = 24120.436144 eV Total energy + Delta-G solvation = -3723.409918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61305 -39.92544 -37.77409 -36.63281 -34.11163 -33.48019 -32.37698 -31.68471 -29.91613 -29.40853 -28.31920 -24.74834 -24.65051 -23.21932 -22.40189 -21.90407 -21.25307 -20.30445 -19.25027 -18.80025 -17.70835 -17.18753 -16.53812 -16.34185 -15.67555 -15.06369 -14.69123 -14.56618 -14.11416 -14.01526 -13.85358 -13.77118 -13.65687 -13.22092 -12.99122 -12.78254 -12.60683 -12.35718 -12.29301 -12.13051 -11.64438 -11.41045 -11.30129 -11.16264 -10.91179 -10.79900 -10.61366 -10.45729 -10.10541 -9.98381 -9.62308 -9.44899 -9.23551 -8.91111 -8.67674 -8.28281 -8.20682 -7.80856 -6.33244 -4.06765 1.80103 2.69037 3.00641 3.20762 3.44790 3.49455 3.64870 3.71112 4.22912 4.47584 4.54048 4.55182 4.71412 4.87275 4.99426 5.16975 5.20087 5.29200 5.33003 5.36906 5.40492 5.42582 5.53295 5.58141 5.69586 5.73844 5.87326 5.97915 6.06228 6.07837 6.21493 6.24007 6.26364 6.38225 6.51196 6.68091 6.70547 6.76566 6.81900 6.84526 7.06266 7.27021 7.34806 7.52019 7.59654 8.22872 8.42968 8.45150 8.88834 9.10996 9.66584 11.04679 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.003740 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.169583 B = 7484.945328 C = 8189.951749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.051 0.949 9 C 0.022 3.978 10 H 0.033 0.967 11 C -0.102 4.102 12 C -0.135 4.135 13 C 0.118 3.882 14 N -0.624 5.624 15 C 0.703 3.297 16 O -0.587 6.587 17 N -0.745 5.745 18 C 0.232 3.768 19 H 0.097 0.903 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.033 4.033 23 C -0.024 4.024 24 O -0.175 6.175 25 C -0.057 4.057 26 C -0.173 4.173 27 C -0.184 4.184 28 C 0.134 3.866 29 H 0.273 0.727 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.391 0.609 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.202 0.798 44 H 0.149 0.851 45 H 0.049 0.951 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -18.626 4.293 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.183 4.183 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.069 0.931 9 C 0.002 3.998 10 H 0.051 0.949 11 C -0.140 4.140 12 C -0.174 4.174 13 C -0.006 4.006 14 N -0.361 5.361 15 C 0.405 3.595 16 O -0.465 6.465 17 N -0.402 5.402 18 C 0.127 3.873 19 H 0.115 0.885 20 C -0.165 4.165 21 C -0.149 4.149 22 C -0.070 4.070 23 C -0.075 4.075 24 O -0.071 6.071 25 C -0.124 4.124 26 C -0.193 4.193 27 C -0.187 4.187 28 C 0.013 3.987 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.219 0.781 44 H 0.167 0.833 45 H 0.067 0.933 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.960 -16.363 4.580 18.764 hybrid contribution 0.654 -1.773 -0.386 1.929 sum -7.307 -18.136 4.193 19.997 Atomic orbital electron populations 1.70746 1.06856 1.31334 1.44988 1.25845 0.96496 1.02658 0.93319 0.83552 0.74749 0.75256 0.76702 1.21527 1.21407 1.20987 1.21866 0.94545 0.91229 1.56024 0.93104 1.19184 0.96364 0.93684 0.90566 0.94871 1.21531 0.98209 0.93537 1.00733 1.21981 1.01026 0.99186 0.95165 1.21486 0.96855 0.88188 0.94104 1.47756 1.22844 1.10728 1.54766 1.15944 0.80728 0.82850 0.79991 1.90911 1.66539 1.40752 1.48295 1.45304 1.20406 1.10857 1.63678 1.19063 0.79136 0.95927 0.93213 0.88472 1.21903 0.97196 0.95412 1.01989 1.21532 0.93734 1.02973 0.96642 1.20169 1.00876 0.91123 0.94871 1.22243 0.92590 0.98169 0.94483 1.83861 1.44694 1.33984 1.44571 1.24089 0.94247 0.90419 1.03606 1.21631 0.99004 1.00389 0.98248 1.20597 0.97731 0.97575 1.02756 1.22246 0.96091 0.79809 1.00597 0.91570 0.92784 0.93312 0.92215 0.92172 0.91982 0.92001 0.77277 0.91111 0.90466 0.90029 0.90787 0.89787 0.89886 0.78113 0.83293 0.93305 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.63 55.43 0.76 -26.84 16 2 C 0.02 0.64 5.45 -17.82 -0.10 0.55 16 3 Si 1.07 25.31 29.91 -169.99 -5.08 20.23 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.60 -16.45 8.32 -34.44 -0.29 -16.73 16 8 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.02 0.53 1.98 -91.65 -0.18 0.35 16 10 H 0.03 0.91 6.66 -51.93 -0.35 0.56 16 11 C -0.10 -2.05 5.15 -26.69 -0.14 -2.19 16 12 C -0.14 -2.16 6.08 -26.61 -0.16 -2.32 16 13 C 0.12 1.77 6.43 -3.71 -0.02 1.75 16 14 N -0.62 -12.12 2.97 -178.49 -0.53 -12.65 16 15 C 0.70 13.86 7.56 -86.92 -0.66 13.20 16 16 O -0.59 -14.11 15.19 5.29 0.08 -14.03 16 17 N -0.74 -11.08 4.93 -59.64 -0.29 -11.38 16 18 C 0.23 3.18 2.87 -68.91 -0.20 2.98 16 19 H 0.10 1.54 7.50 -51.93 -0.39 1.15 16 20 C -0.13 -1.14 5.41 -26.46 -0.14 -1.28 16 21 C -0.11 -0.82 5.89 -26.49 -0.16 -0.98 16 22 C -0.03 -0.28 6.30 -27.60 -0.17 -0.46 16 23 C -0.02 -0.31 7.22 -35.38 -0.26 -0.56 16 24 O -0.17 -2.48 10.65 6.36 0.07 -2.41 16 25 C -0.06 -0.83 12.10 29.50 0.36 -0.47 16 26 C -0.17 -2.97 10.42 -39.90 -0.42 -3.38 16 27 C -0.18 -2.76 5.62 -104.93 -0.59 -3.35 16 28 C 0.13 3.14 5.68 -3.70 -0.02 3.12 16 29 H 0.27 8.43 6.65 -40.82 -0.27 8.16 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.39 4.77 6.06 -40.82 -0.25 4.52 16 37 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.20 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.15 3.02 7.48 -52.49 -0.39 2.63 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 2.28 7.04 -51.92 -0.37 1.91 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -33.96 361.54 -9.70 -43.66 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.00 Total: 7.77 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.14 Total: -9.79 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.07 Total: -50.87 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.15 Total: -16.44 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.96 -9.70 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595441576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.119 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds