Wall clock time and date at job start Tue Mar 31 2020 12:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 120.00391 * 2 1 4 4 C 1.38219 * 120.00346 * 179.83468 * 3 2 1 5 5 C 1.38262 * 119.99465 * 0.39313 * 4 3 2 6 6 N 1.48016 * 119.99686 * 179.81457 * 5 4 3 7 7 O 1.21796 * 119.99980 * 179.72878 * 6 5 4 8 8 O 1.21800 * 120.00004 * 359.44932 * 6 5 4 9 9 C 1.38209 * 120.00234 * 359.53945 * 5 4 3 10 10 C 1.38223 * 119.99784 * 179.97438 * 2 1 3 11 11 C 1.50704 * 119.99795 * 0.02562 * 10 2 1 12 12 H 1.09003 * 109.46988 * 33.73714 * 11 10 2 13 13 C 1.53000 * 109.46883 * 273.73368 * 11 10 2 14 14 N 1.46900 * 109.46666 * 153.73648 * 11 10 2 15 15 C 1.46846 * 110.99611 * 171.24988 * 14 11 10 16 16 C 1.53037 * 109.52230 * 185.83957 * 15 14 11 17 17 C 1.53122 * 109.27699 * 300.81898 * 16 15 14 18 18 C 1.53117 * 109.16316 * 57.65451 * 17 16 15 19 19 H 1.08997 * 109.53446 * 62.30365 * 18 17 16 20 20 C 1.50700 * 109.50714 * 182.40603 * 18 17 16 21 21 H 1.07999 * 120.00028 * 119.80353 * 20 18 17 22 22 C 1.37880 * 119.99839 * 299.80573 * 20 18 17 23 23 N 1.31519 * 119.99642 * 359.97438 * 22 20 18 24 24 Si 1.86792 * 120.00000 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47206 * 59.99614 * 24 22 20 26 26 H 1.48494 * 109.47386 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46964 * 299.99734 * 24 22 20 28 28 C 1.46849 * 110.99969 * 295.45560 * 14 11 10 29 29 H 1.08997 * 109.47405 * 270.02631 * 1 2 3 30 30 H 1.09005 * 109.46787 * 30.02427 * 1 2 3 31 31 H 1.09003 * 109.47143 * 150.02220 * 1 2 3 32 32 H 1.08000 * 120.00130 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00433 * 180.20253 * 4 3 2 34 34 H 1.07997 * 120.00032 * 180.25292 * 9 5 4 35 35 H 1.08998 * 109.47174 * 300.00193 * 13 11 10 36 36 H 1.09004 * 109.46901 * 60.00167 * 13 11 10 37 37 H 1.09002 * 109.46931 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.46229 * 305.85199 * 15 14 11 39 39 H 1.09002 * 109.46527 * 65.82287 * 15 14 11 40 40 H 1.08998 * 109.50354 * 180.88000 * 16 15 14 41 41 H 1.08993 * 109.50840 * 60.76099 * 16 15 14 42 42 H 1.09002 * 109.52188 * 297.74995 * 17 16 15 43 43 H 1.08999 * 109.52422 * 177.56001 * 17 16 15 44 44 H 0.97000 * 119.99518 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.46462 * 294.18273 * 28 14 11 46 46 H 1.09003 * 109.46239 * 54.14742 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0035 5 6 4.2717 -0.0002 -0.0013 6 7 5.7519 -0.0002 -0.0018 7 8 6.3608 -1.0550 -0.0010 8 8 6.3609 1.0545 -0.0081 9 6 3.5806 -1.1971 0.0001 10 6 2.1981 -1.1971 0.0005 11 6 1.4444 -2.5022 0.0005 12 1 0.5229 -2.3895 -0.5706 13 6 1.1075 -2.8965 1.4400 14 7 2.2755 -3.5473 -0.6118 15 6 1.6633 -4.8716 -0.4444 16 6 2.6210 -5.9469 -0.9627 17 6 2.9214 -5.6861 -2.4413 18 6 3.5131 -4.2821 -2.5939 19 1 4.4551 -4.2224 -2.0489 20 6 3.7570 -3.9946 -4.0531 21 1 3.2603 -3.1626 -4.5299 22 6 4.6142 -4.7940 -4.7793 23 7 5.2193 -5.8069 -4.1984 24 14 4.9170 -4.4373 -6.5876 25 1 5.4867 -3.0738 -6.7346 26 1 5.8717 -5.4339 -7.1357 27 1 3.6336 -4.5202 -7.3302 28 6 2.5296 -3.2551 -2.0283 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6584 2.1326 -0.0004 33 1 4.1206 2.1325 0.0068 34 1 4.1206 -2.1324 0.0005 35 1 2.0291 -3.0090 2.0110 36 1 0.4910 -2.1208 1.8943 37 1 0.5628 -3.8406 1.4400 38 1 1.4587 -5.0462 0.6119 39 1 0.7306 -4.9143 -1.0068 40 1 2.1600 -6.9284 -0.8527 41 1 3.5488 -5.9139 -0.3916 42 1 1.9995 -5.7575 -3.0185 43 1 3.6370 -6.4242 -2.8034 44 1 5.8227 -6.3690 -4.7092 45 1 1.5928 -3.3053 -2.5833 46 1 2.9541 -2.2555 -2.1224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:09 Heat of formation + Delta-G solvation = 16.892027 kcal Electronic energy + Delta-G solvation = -27936.231432 eV Core-core repulsion = 24214.618294 eV Total energy + Delta-G solvation = -3721.613138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92997 -40.26051 -38.20964 -36.27789 -34.94298 -33.43392 -32.50361 -30.68935 -30.28567 -28.83946 -28.58894 -25.18922 -24.94396 -24.19918 -22.98237 -21.90486 -21.10860 -20.29590 -18.82785 -18.54016 -18.33365 -17.24526 -16.61035 -15.98626 -15.74495 -15.30350 -14.71030 -14.49310 -14.33986 -14.20075 -13.85484 -13.47269 -12.83445 -12.72962 -12.65193 -12.60519 -12.52374 -12.27115 -11.98354 -11.84426 -11.66320 -11.41757 -11.27418 -11.08450 -10.93494 -10.86630 -10.85465 -10.70393 -10.59953 -10.11268 -9.85552 -9.53777 -9.33125 -9.07943 -9.04630 -8.72787 -8.30122 -7.84831 -5.97042 -4.03478 0.00455 0.97305 1.48988 1.65478 3.25965 3.32577 3.37814 3.39820 4.10472 4.30942 4.40284 4.48278 4.58335 4.70270 4.87174 5.10934 5.14780 5.17241 5.29387 5.33050 5.34931 5.47991 5.53850 5.64620 5.70577 5.73458 5.74124 5.89498 5.92156 6.00532 6.07247 6.20524 6.24222 6.30785 6.38738 6.42043 6.65199 6.66614 6.69552 6.89593 7.16659 7.33238 7.52402 7.66461 7.75768 7.90373 8.05859 8.15624 8.45903 8.99515 9.60966 11.08958 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.005094 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.914997 B = 5495.366302 C = 6812.457809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.035 4.035 3 C -0.126 4.126 4 C -0.060 4.060 5 C -0.054 4.054 6 N 0.030 4.970 7 O -0.145 6.145 8 O -0.179 6.179 9 C -0.015 4.015 10 C -0.071 4.071 11 C 0.116 3.884 12 H 0.055 0.945 13 C -0.145 4.145 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.118 4.118 17 C -0.111 4.111 18 C 0.057 3.943 19 H 0.036 0.964 20 C -0.518 4.518 21 H 0.050 0.950 22 C 0.066 3.934 23 N -0.885 5.885 24 Si 0.888 3.112 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.279 1.279 28 C 0.066 3.934 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.261 0.739 45 H 0.020 0.980 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 9.907 12.027 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.036 4.036 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.137 4.137 6 N 0.549 4.451 7 O -0.365 6.365 8 O -0.390 6.390 9 C -0.034 4.034 10 C -0.073 4.073 11 C 0.008 3.992 12 H 0.073 0.927 13 C -0.202 4.202 14 N -0.260 5.260 15 C -0.067 4.067 16 C -0.156 4.156 17 C -0.149 4.149 18 C 0.038 3.962 19 H 0.054 0.946 20 C -0.557 4.557 21 H 0.068 0.932 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.716 3.284 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.204 1.204 28 C -0.061 4.061 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.615 9.780 12.232 19.498 hybrid contribution -0.110 0.279 -1.591 1.619 sum -11.726 10.059 10.641 18.759 Atomic orbital electron populations 1.20999 0.90133 1.03895 1.03096 1.20174 0.97038 0.92368 0.94038 1.20932 0.92427 0.98342 1.02738 1.20959 0.94659 0.96938 0.95332 1.21150 0.79373 0.97037 1.16101 1.43612 1.03667 1.00408 0.97377 1.94612 1.69000 1.20399 1.52508 1.94481 1.69233 1.20927 1.54370 1.21169 0.94312 0.97790 0.90159 1.19688 0.92317 0.94933 1.00338 1.20546 0.93662 0.88624 0.96408 0.92712 1.21939 1.02164 1.01444 0.94660 1.62050 1.45063 1.00958 1.17929 1.22125 0.95886 0.89102 0.99546 1.21685 0.98612 0.95406 0.99863 1.21660 0.99919 1.02127 0.91174 1.18643 0.93284 0.89415 0.94832 0.94564 1.21052 1.26463 1.13315 0.94831 0.93160 1.24900 0.95545 0.95093 0.98046 1.69871 1.29224 1.17235 1.36040 0.86720 0.77964 0.78129 0.85549 1.20325 1.21185 1.20442 1.22388 0.98985 1.00690 0.84031 0.90074 0.90784 0.90331 0.83998 0.83420 0.81261 0.91490 0.92433 0.91436 0.91544 0.95755 0.93411 0.91901 0.95229 0.89028 0.92929 0.96191 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.54 36.00 0.34 -0.58 16 2 C -0.04 -0.37 5.88 -104.62 -0.62 -0.99 16 3 C -0.13 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.06 -0.72 9.56 -39.58 -0.38 -1.09 16 5 C -0.05 -0.82 6.85 -79.95 -0.55 -1.37 16 6 N 0.03 0.54 4.45 33.96 0.15 0.69 16 7 O -0.15 -2.88 18.45 -29.46 -0.54 -3.42 16 8 O -0.18 -3.13 18.45 -29.46 -0.54 -3.67 16 9 C -0.02 -0.24 7.48 -39.58 -0.30 -0.53 16 10 C -0.07 -0.93 4.21 -104.62 -0.44 -1.37 16 11 C 0.12 1.50 1.82 -68.86 -0.13 1.38 16 12 H 0.06 0.68 6.10 -51.93 -0.32 0.37 16 13 C -0.14 -1.51 8.65 37.16 0.32 -1.19 16 14 N -0.53 -8.86 3.49 -228.07 -0.79 -9.65 16 15 C 0.06 0.96 5.02 -3.83 -0.02 0.94 16 16 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 17 C -0.11 -2.54 5.03 -26.61 -0.13 -2.68 16 18 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 19 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.52 -14.20 8.56 -34.44 -0.29 -14.49 16 21 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 22 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 23 N -0.89 -25.32 11.36 55.43 0.63 -24.69 16 24 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.07 1.33 4.24 -3.83 -0.02 1.31 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.08 0.62 6.01 -51.93 -0.31 0.31 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 34 H 0.17 3.02 6.78 -52.49 -0.36 2.66 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.07 0.66 6.19 -51.93 -0.32 0.34 16 38 H 0.07 0.88 5.83 -51.93 -0.30 0.58 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.17 6.18 -51.93 -0.32 0.85 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -29.97 363.53 -10.53 -40.50 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.83 Total: -0.08 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.05 Total: -21.68 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.01 Total: -33.65 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -1.09 Total: -7.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.97 -10.53 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.392 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds