Wall clock time and date at job start Tue Mar 31 2020 12:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 120.00391 * 2 1 4 4 C 1.38219 * 120.00346 * 179.83468 * 3 2 1 5 5 C 1.38262 * 119.99465 * 0.39313 * 4 3 2 6 6 N 1.48016 * 119.99686 * 179.81457 * 5 4 3 7 7 O 1.21796 * 119.99980 * 179.72878 * 6 5 4 8 8 O 1.21800 * 120.00004 * 359.44932 * 6 5 4 9 9 C 1.38209 * 120.00234 * 359.53945 * 5 4 3 10 10 C 1.38223 * 119.99784 * 179.97438 * 2 1 3 11 11 C 1.50704 * 119.99795 * 0.02562 * 10 2 1 12 12 H 1.09003 * 109.46988 * 33.73714 * 11 10 2 13 13 C 1.53000 * 109.46883 * 273.73368 * 11 10 2 14 14 N 1.46900 * 109.46666 * 153.73648 * 11 10 2 15 15 C 1.46846 * 110.99611 * 171.24988 * 14 11 10 16 16 C 1.53037 * 109.52230 * 185.83957 * 15 14 11 17 17 C 1.53122 * 109.27699 * 300.81898 * 16 15 14 18 18 C 1.53117 * 109.16316 * 57.65451 * 17 16 15 19 19 H 1.08997 * 109.53446 * 62.30365 * 18 17 16 20 20 C 1.50700 * 109.50714 * 182.40603 * 18 17 16 21 21 H 1.07999 * 120.00028 * 119.80353 * 20 18 17 22 22 C 1.37880 * 119.99839 * 299.80573 * 20 18 17 23 23 N 1.31519 * 119.99642 * 359.97438 * 22 20 18 24 24 Si 1.86792 * 120.00000 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47206 * 59.99614 * 24 22 20 26 26 H 1.48494 * 109.47386 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46964 * 299.99734 * 24 22 20 28 28 C 1.46849 * 110.99969 * 295.45560 * 14 11 10 29 29 H 1.08997 * 109.47405 * 270.02631 * 1 2 3 30 30 H 1.09005 * 109.46787 * 30.02427 * 1 2 3 31 31 H 1.09003 * 109.47143 * 150.02220 * 1 2 3 32 32 H 1.08000 * 120.00130 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00433 * 180.20253 * 4 3 2 34 34 H 1.07997 * 120.00032 * 180.25292 * 9 5 4 35 35 H 1.08998 * 109.47174 * 300.00193 * 13 11 10 36 36 H 1.09004 * 109.46901 * 60.00167 * 13 11 10 37 37 H 1.09002 * 109.46931 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.46229 * 305.85199 * 15 14 11 39 39 H 1.09002 * 109.46527 * 65.82287 * 15 14 11 40 40 H 1.08998 * 109.50354 * 180.88000 * 16 15 14 41 41 H 1.08993 * 109.50840 * 60.76099 * 16 15 14 42 42 H 1.09002 * 109.52188 * 297.74995 * 17 16 15 43 43 H 1.08999 * 109.52422 * 177.56001 * 17 16 15 44 44 H 0.97000 * 119.99518 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.46462 * 294.18273 * 28 14 11 46 46 H 1.09003 * 109.46239 * 54.14742 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0035 5 6 4.2717 -0.0002 -0.0013 6 7 5.7519 -0.0002 -0.0018 7 8 6.3608 -1.0550 -0.0010 8 8 6.3609 1.0545 -0.0081 9 6 3.5806 -1.1971 0.0001 10 6 2.1981 -1.1971 0.0005 11 6 1.4444 -2.5022 0.0005 12 1 0.5229 -2.3895 -0.5706 13 6 1.1075 -2.8965 1.4400 14 7 2.2755 -3.5473 -0.6118 15 6 1.6633 -4.8716 -0.4444 16 6 2.6210 -5.9469 -0.9627 17 6 2.9214 -5.6861 -2.4413 18 6 3.5131 -4.2821 -2.5939 19 1 4.4551 -4.2224 -2.0489 20 6 3.7570 -3.9946 -4.0531 21 1 3.2603 -3.1626 -4.5299 22 6 4.6142 -4.7940 -4.7793 23 7 5.2193 -5.8069 -4.1984 24 14 4.9170 -4.4373 -6.5876 25 1 5.4867 -3.0738 -6.7346 26 1 5.8717 -5.4339 -7.1357 27 1 3.6336 -4.5202 -7.3302 28 6 2.5296 -3.2551 -2.0283 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6584 2.1326 -0.0004 33 1 4.1206 2.1325 0.0068 34 1 4.1206 -2.1324 0.0005 35 1 2.0291 -3.0090 2.0110 36 1 0.4910 -2.1208 1.8943 37 1 0.5628 -3.8406 1.4400 38 1 1.4587 -5.0462 0.6119 39 1 0.7306 -4.9143 -1.0068 40 1 2.1600 -6.9284 -0.8527 41 1 3.5488 -5.9139 -0.3916 42 1 1.9995 -5.7575 -3.0185 43 1 3.6370 -6.4242 -2.8034 44 1 5.8227 -6.3690 -4.7092 45 1 1.5928 -3.3053 -2.5833 46 1 2.9541 -2.2555 -2.1224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:09 Heat of formation + Delta-G solvation = 1.185286 kcal Electronic energy + Delta-G solvation = -27936.912527 eV Core-core repulsion = 24214.618294 eV Total energy + Delta-G solvation = -3722.294233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.25021 -41.34793 -39.56214 -37.67077 -36.40314 -34.71551 -33.97621 -32.11244 -31.74594 -30.11418 -29.57060 -26.95566 -26.11410 -25.45080 -24.30051 -23.26065 -22.45373 -21.56294 -20.40780 -19.82983 -19.65748 -18.60158 -18.44801 -17.34955 -16.72013 -16.65993 -16.31527 -15.72864 -15.54908 -15.17342 -14.98738 -14.79047 -14.51462 -14.21818 -14.05076 -13.56964 -13.44693 -13.25285 -13.10284 -13.01968 -12.93788 -12.87690 -12.75021 -12.58617 -12.49793 -12.45913 -12.32217 -12.22938 -11.96209 -11.73797 -11.60516 -11.41010 -10.87818 -10.70611 -10.41616 -10.22798 -10.01544 -9.16774 -8.11637 -6.26170 -1.21469 0.01934 0.31088 0.45240 1.35331 1.37675 1.44755 2.29089 2.38069 2.93526 3.15270 3.32168 3.54719 3.70208 3.84813 3.88787 4.11857 4.14171 4.25547 4.26540 4.34158 4.44395 4.57704 4.63635 4.67372 4.67919 4.79054 4.83411 4.85596 4.88693 4.89405 4.95432 5.01343 5.07026 5.13376 5.17120 5.23588 5.33552 5.35133 5.40059 5.49500 5.59567 5.61324 5.93888 6.09933 6.18742 6.33627 6.40853 6.48192 6.86766 7.41663 8.92737 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.005094 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.914997 B = 5495.366302 C = 6812.457809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.019 4.019 3 C -0.110 4.110 4 C -0.056 4.056 5 C -0.080 4.080 6 N 0.033 4.967 7 O -0.230 6.230 8 O -0.151 6.151 9 C -0.037 4.037 10 C -0.083 4.083 11 C 0.116 3.884 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.548 5.548 15 C 0.065 3.935 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.055 3.945 19 H -0.012 1.012 20 C -0.539 4.539 21 H 0.047 0.953 22 C 0.015 3.985 23 N -0.913 5.913 24 Si 0.950 3.050 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.266 1.266 28 C 0.089 3.911 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.191 0.809 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.260 0.740 45 H 0.019 0.981 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 12.497 12.848 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.163 4.163 6 N 0.546 4.454 7 O -0.430 6.430 8 O -0.374 6.374 9 C -0.057 4.057 10 C -0.085 4.085 11 C 0.008 3.992 12 H 0.090 0.910 13 C -0.196 4.196 14 N -0.273 5.273 15 C -0.062 4.062 16 C -0.150 4.150 17 C -0.141 4.141 18 C 0.036 3.964 19 H 0.006 0.994 20 C -0.578 4.578 21 H 0.065 0.935 22 C -0.184 4.184 23 N -0.552 5.552 24 Si 0.775 3.225 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.039 4.039 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.208 0.792 33 H 0.185 0.815 34 H 0.148 0.852 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.796 12.211 13.066 23.861 hybrid contribution 1.105 -0.342 -1.810 2.148 sum -14.691 11.869 11.256 21.986 Atomic orbital electron populations 1.21158 0.87002 1.04986 1.05000 1.20643 0.99085 0.91282 0.90951 1.21491 0.91234 1.00004 1.00033 1.21361 0.95889 0.96035 0.94189 1.21389 0.77220 0.98604 1.19120 1.44053 1.05096 0.99817 0.96463 1.94623 1.70266 1.21055 1.57083 1.94402 1.70308 1.20660 1.52053 1.20953 0.95606 0.96551 0.92583 1.19834 0.91097 0.96468 1.01059 1.20725 0.93294 0.87276 0.97870 0.91005 1.21934 1.02096 1.03101 0.92503 1.61908 1.47370 1.02665 1.15373 1.22134 0.94919 0.87504 1.01603 1.21601 0.99070 0.98118 0.96236 1.21443 0.98339 0.99928 0.94394 1.18534 0.92589 0.92034 0.93211 0.99417 1.21467 1.26647 1.13157 0.96521 0.93477 1.25701 0.95415 0.94963 1.02297 1.70031 1.29657 1.18007 1.37488 0.85746 0.78284 0.77809 0.80649 1.20288 1.20667 1.19116 1.21882 0.97277 0.98312 0.86417 0.87428 0.88380 0.90619 0.79225 0.81489 0.85174 0.92955 0.89383 0.90280 0.88043 0.94714 0.90920 0.93626 0.95581 0.92758 0.93044 0.96302 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.54 71.24 0.68 -0.42 16 2 C -0.02 -0.31 5.88 -19.87 -0.12 -0.43 16 3 C -0.11 -1.61 9.70 22.27 0.22 -1.40 16 4 C -0.06 -1.20 9.56 22.27 0.21 -0.99 16 5 C -0.08 -2.52 6.85 36.37 0.25 -2.27 16 6 N 0.03 1.27 4.45 -46.47 -0.21 1.06 16 7 O -0.23 -10.25 18.45 18.89 0.35 -9.90 16 8 O -0.15 -5.39 18.45 18.89 0.35 -5.05 16 9 C -0.04 -1.22 7.48 22.27 0.17 -1.05 16 10 C -0.08 -2.05 4.21 -19.86 -0.08 -2.14 16 11 C 0.12 2.75 1.82 44.17 0.08 2.83 16 12 H 0.07 1.51 6.10 -2.39 -0.01 1.50 16 13 C -0.14 -2.43 8.65 71.98 0.62 -1.81 16 14 N -0.55 -18.21 3.49 -875.48 -3.05 -21.26 16 15 C 0.07 1.97 5.02 86.33 0.43 2.40 16 16 C -0.11 -4.22 6.09 30.65 0.19 -4.03 16 17 C -0.10 -4.96 5.03 30.67 0.15 -4.80 16 18 C 0.06 2.89 2.26 -11.49 -0.03 2.86 16 19 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 20 C -0.54 -31.06 8.56 25.60 0.22 -30.84 16 21 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 22 C 0.02 0.89 5.30 84.65 0.45 1.34 16 23 N -0.91 -55.10 11.36 21.45 0.24 -54.86 16 24 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.09 3.72 4.24 86.33 0.37 4.08 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.49 8.09 -2.38 -0.02 0.47 16 31 H 0.08 0.78 6.01 -2.39 -0.01 0.77 16 32 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.17 2.92 7.61 -2.91 -0.02 2.90 16 34 H 0.13 5.24 6.78 -2.91 -0.02 5.22 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 37 H 0.08 1.21 6.19 -2.39 -0.01 1.20 16 38 H 0.10 2.40 5.83 -2.39 -0.01 2.39 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 3.01 6.17 -2.39 -0.01 2.99 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.04 1.88 6.18 -2.39 -0.01 1.87 16 Total: -1.00 -73.93 363.53 4.50 -69.44 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.98 Total: 9.75 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.81 Total: -36.66 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -3.01 Total: -75.06 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.70 Total: -14.95 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.93 4.50 -69.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.621 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds