Wall clock time and date at job start Tue Mar 31 2020 12:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 120.00051 * 2 1 4 4 C 1.38204 * 120.00044 * 180.02562 * 3 2 1 5 5 C 1.38264 * 120.00044 * 359.94584 * 4 3 2 6 6 N 1.48014 * 119.99747 * 180.02562 * 5 4 3 7 7 O 1.21801 * 120.00377 * 0.02562 * 6 5 4 8 8 O 1.21805 * 120.00156 * 180.02562 * 6 5 4 9 9 C 1.38206 * 119.99867 * 359.80006 * 5 4 3 10 10 C 1.38216 * 119.99965 * 179.97438 * 2 1 3 11 11 C 1.50699 * 120.00145 * 0.02562 * 10 2 1 12 12 H 1.09005 * 109.46750 * 324.99234 * 11 10 2 13 13 C 1.52996 * 109.47154 * 84.99361 * 11 10 2 14 14 N 1.46896 * 109.47034 * 204.99953 * 11 10 2 15 15 C 1.46850 * 111.00472 * 56.04266 * 14 11 10 16 16 C 1.53036 * 109.52384 * 185.84130 * 15 14 11 17 17 C 1.53114 * 109.27799 * 300.81924 * 16 15 14 18 18 C 1.53120 * 109.16161 * 57.65854 * 17 16 15 19 19 H 1.08996 * 109.50301 * 62.32306 * 18 17 16 20 20 C 1.50699 * 109.50204 * 182.40736 * 18 17 16 21 21 H 1.08000 * 120.00193 * 120.00336 * 20 18 17 22 22 C 1.37879 * 119.99808 * 299.99151 * 20 18 17 23 23 N 1.31509 * 119.99991 * 180.02562 * 22 20 18 24 24 Si 1.86806 * 119.99955 * 0.02562 * 22 20 18 25 25 H 1.48497 * 109.46974 * 89.99636 * 24 22 20 26 26 H 1.48498 * 109.46881 * 209.99563 * 24 22 20 27 27 H 1.48502 * 109.46801 * 329.99581 * 24 22 20 28 28 C 1.46846 * 110.99998 * 180.25677 * 14 11 10 29 29 H 1.09002 * 109.47057 * 270.02150 * 1 2 3 30 30 H 1.09001 * 109.47195 * 30.02492 * 1 2 3 31 31 H 1.08997 * 109.47317 * 150.03001 * 1 2 3 32 32 H 1.07995 * 119.99809 * 359.97028 * 3 2 1 33 33 H 1.07996 * 120.00184 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00275 * 180.25043 * 9 5 4 35 35 H 1.09005 * 109.46854 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47230 * 300.00088 * 13 11 10 37 37 H 1.09000 * 109.46950 * 60.00107 * 13 11 10 38 38 H 1.08995 * 109.45831 * 65.81919 * 15 14 11 39 39 H 1.08998 * 109.45719 * 305.85769 * 15 14 11 40 40 H 1.09004 * 109.50109 * 60.76189 * 16 15 14 41 41 H 1.08996 * 109.49818 * 180.83779 * 16 15 14 42 42 H 1.08995 * 109.52025 * 177.56309 * 17 16 15 43 43 H 1.09002 * 109.52325 * 297.75085 * 17 16 15 44 44 H 0.97005 * 120.00033 * 180.02562 * 23 22 20 45 45 H 1.08993 * 109.46639 * 54.13954 * 28 14 11 46 46 H 1.09006 * 109.45299 * 294.16835 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0001 6 7 5.7518 0.0000 0.0001 7 8 6.3608 1.0549 0.0000 8 8 6.3609 -1.0548 0.0001 9 6 3.5806 -1.1969 0.0054 10 6 2.1981 -1.1970 0.0005 11 6 1.4446 -2.5021 0.0005 12 1 0.5337 -2.3957 0.5898 13 6 1.0812 -2.8811 -1.4365 14 7 2.2866 -3.5536 0.5864 15 6 2.7330 -3.1802 1.9347 16 6 3.7213 -4.2268 2.4543 17 6 3.0380 -5.5967 2.4837 18 6 2.5398 -5.9402 1.0772 19 1 3.3887 -6.0079 0.3969 20 6 1.8138 -7.2604 1.1090 21 1 0.7764 -7.3135 0.8133 22 6 2.4740 -8.4005 1.5156 23 7 1.8407 -9.5527 1.5429 24 14 4.2682 -8.3085 2.0275 25 1 4.3537 -8.0384 3.4852 26 1 4.9365 -9.5992 1.7232 27 1 4.9404 -7.2148 1.2811 28 6 1.5857 -4.8439 0.5974 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5133 32 1 1.6583 2.1326 -0.0005 33 1 4.1204 2.1326 -0.0010 34 1 4.1206 -2.1323 0.0099 35 1 0.5365 -3.8254 -1.4365 36 1 0.4563 -2.1009 -1.8711 37 1 1.9920 -2.9875 -2.0256 38 1 1.8722 -3.1308 2.6014 39 1 3.2209 -2.2062 1.8989 40 1 4.5888 -4.2669 1.7954 41 1 4.0410 -3.9572 3.4608 42 1 3.7513 -6.3525 2.8122 43 1 2.1935 -5.5678 3.1724 44 1 2.3050 -10.3548 1.8293 45 1 1.2402 -5.0782 -0.4094 46 1 0.7303 -4.7867 1.2707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:12 Heat of formation + Delta-G solvation = 7.162759 kcal Electronic energy + Delta-G solvation = -27764.912203 eV Core-core repulsion = 24042.877172 eV Total energy + Delta-G solvation = -3722.035031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.25005 -41.47326 -39.67503 -37.66369 -36.47777 -34.81323 -34.08062 -32.45835 -32.01664 -30.19988 -29.59694 -26.98232 -26.17316 -25.62936 -24.34387 -23.03523 -22.57097 -21.67807 -20.55885 -19.83546 -19.64239 -18.79143 -18.59043 -17.63109 -16.85257 -16.71299 -16.13665 -15.87679 -15.57077 -15.24293 -15.12851 -14.81106 -14.74229 -14.43561 -14.30230 -14.07003 -13.52904 -13.35645 -13.12820 -13.03359 -12.95692 -12.77727 -12.74060 -12.60622 -12.54327 -12.31606 -12.30784 -12.22305 -11.98362 -11.87358 -11.74138 -11.37586 -11.01680 -10.87121 -10.61961 -10.23789 -10.03394 -9.26695 -8.31567 -6.33860 -1.22483 -0.02323 0.30430 0.42502 1.27735 1.35453 1.45259 2.25435 2.30988 2.82464 3.05035 3.25772 3.52516 3.67483 3.83074 3.85746 3.93783 3.99588 4.18384 4.21445 4.26278 4.30519 4.40972 4.54947 4.60189 4.64682 4.68692 4.74336 4.77537 4.78848 4.84265 4.86075 4.87535 4.96197 5.03753 5.08715 5.14249 5.18387 5.22390 5.27518 5.36590 5.46199 5.56831 5.63057 5.70441 6.09848 6.21303 6.32594 6.48338 6.73580 7.32204 8.84976 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.004115 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.047554 B = 6802.538470 C = 8072.707415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 C -0.107 4.107 4 C -0.052 4.052 5 C -0.075 4.075 6 N 0.033 4.967 7 O -0.160 6.160 8 O -0.215 6.215 9 C -0.040 4.040 10 C -0.082 4.082 11 C 0.121 3.879 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.545 5.545 15 C 0.062 3.938 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.019 3.981 19 H 0.021 0.979 20 C -0.514 4.514 21 H 0.040 0.960 22 C 0.019 3.981 23 N -0.948 5.948 24 Si 0.944 3.056 25 H -0.269 1.269 26 H -0.300 1.300 27 H -0.253 1.253 28 C 0.090 3.910 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.052 0.948 44 H 0.265 0.735 45 H 0.073 0.927 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 26.968 -2.849 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.016 4.016 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.159 4.159 6 N 0.546 4.454 7 O -0.380 6.380 8 O -0.419 6.419 9 C -0.059 4.059 10 C -0.084 4.084 11 C 0.013 3.987 12 H 0.089 0.911 13 C -0.200 4.200 14 N -0.271 5.271 15 C -0.066 4.066 16 C -0.154 4.154 17 C -0.158 4.158 18 C 0.000 4.000 19 H 0.039 0.961 20 C -0.552 4.552 21 H 0.058 0.942 22 C -0.179 4.179 23 N -0.589 5.589 24 Si 0.772 3.228 25 H -0.196 1.196 26 H -0.228 1.228 27 H -0.177 1.177 28 C -0.037 4.037 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.205 0.795 33 H 0.185 0.815 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.955 26.658 -3.114 27.129 hybrid contribution 0.911 -1.133 0.859 1.689 sum -3.044 25.525 -2.255 25.804 Atomic orbital electron populations 1.21179 0.87575 1.05444 1.04533 1.20577 0.98751 0.91388 0.90858 1.21464 0.91427 0.99785 0.99865 1.21355 0.95664 0.96331 0.93779 1.21288 0.77352 0.98274 1.18950 1.44014 1.04905 0.99892 0.96565 1.94450 1.70160 1.20684 1.52709 1.94597 1.70158 1.20972 1.56221 1.20971 0.95124 0.96881 0.92938 1.19713 0.91392 0.95694 1.01576 1.20596 0.93565 0.87048 0.97507 0.91095 1.21922 1.01976 1.02495 0.93645 1.61935 1.40984 1.02563 1.21583 1.22092 0.97686 0.98125 0.88672 1.21617 0.98368 0.94461 1.00964 1.21910 0.98833 0.95801 0.99234 1.19077 0.95291 0.92620 0.93018 0.96095 1.21307 0.98066 0.92383 1.43492 0.94210 1.25724 1.01885 0.94939 0.95320 1.70025 1.38813 1.00001 1.50011 0.85916 0.81122 0.76612 0.79174 1.19553 1.22838 1.17750 1.21823 0.94322 0.87248 1.00302 0.88813 0.87808 0.90222 0.79485 0.81471 0.84138 0.91973 0.89262 0.92843 0.94500 0.90319 0.92413 0.90546 0.95039 0.92892 0.92609 0.90841 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.22 71.24 0.66 -0.20 16 2 C -0.01 -0.18 5.88 -19.86 -0.12 -0.30 16 3 C -0.11 -1.02 9.70 22.27 0.22 -0.80 16 4 C -0.05 -0.78 9.56 22.27 0.21 -0.57 16 5 C -0.08 -1.75 6.85 36.37 0.25 -1.50 16 6 N 0.03 0.98 4.45 -46.47 -0.21 0.77 16 7 O -0.16 -4.53 18.45 18.89 0.35 -4.18 16 8 O -0.22 -7.38 18.45 18.88 0.35 -7.03 16 9 C -0.04 -0.96 6.86 22.27 0.15 -0.81 16 10 C -0.08 -1.58 4.25 -19.87 -0.08 -1.67 16 11 C 0.12 2.64 1.59 44.17 0.07 2.72 16 12 H 0.07 1.39 6.99 -2.38 -0.02 1.37 16 13 C -0.14 -2.94 8.75 71.98 0.63 -2.31 16 14 N -0.55 -16.42 3.66 -875.52 -3.21 -19.62 16 15 C 0.06 1.79 4.70 86.32 0.41 2.20 16 16 C -0.12 -3.93 6.09 30.64 0.19 -3.74 16 17 C -0.12 -5.04 4.73 30.67 0.15 -4.89 16 18 C 0.02 0.88 1.85 -11.49 -0.02 0.86 16 19 H 0.02 1.03 7.21 -2.39 -0.02 1.01 16 20 C -0.51 -28.88 9.15 25.60 0.23 -28.64 16 21 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 22 C 0.02 1.08 5.45 84.66 0.46 1.55 16 23 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 24 Si 0.94 46.45 24.35 68.60 1.67 48.12 16 25 H -0.27 -12.67 6.89 99.48 0.69 -11.98 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 27 H -0.25 -11.97 6.53 99.48 0.65 -11.32 16 28 C 0.09 3.34 4.44 86.33 0.38 3.73 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.18 8.09 -2.39 -0.02 0.16 16 31 H 0.08 0.61 5.43 -2.39 -0.01 0.60 16 32 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 33 H 0.17 1.90 7.61 -2.91 -0.02 1.88 16 34 H 0.14 4.20 6.42 -2.91 -0.02 4.18 16 35 H 0.06 1.42 6.27 -2.38 -0.01 1.41 16 36 H 0.09 1.26 6.91 -2.39 -0.02 1.24 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 2.07 5.24 -2.39 -0.01 2.06 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.03 1.41 3.34 -2.39 -0.01 1.40 16 43 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 45 H 0.07 2.71 6.00 -2.39 -0.01 2.70 16 46 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -71.07 353.78 3.95 -67.12 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.92 Total: 8.20 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.78 Total: -34.38 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.11 Total: -77.86 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.70 Total: -11.21 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.12 kcal Total: -71.07 3.95 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.282 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds