Wall clock time and date at job start Tue Mar 31 2020 12:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 120.00188 * 2 1 4 4 C 1.38205 * 119.99971 * 180.24739 * 3 2 1 5 5 C 1.38259 * 120.00173 * 359.79265 * 4 3 2 6 6 N 1.48018 * 119.99700 * 179.97438 * 5 4 3 7 7 O 1.21805 * 119.99723 * 179.97438 * 6 5 4 8 8 O 1.21792 * 120.00583 * 359.97438 * 6 5 4 9 9 C 1.38210 * 120.00106 * 359.95361 * 5 4 3 10 10 C 1.38215 * 120.00043 * 179.76331 * 2 1 3 11 11 C 1.50693 * 119.99938 * 0.02562 * 10 2 1 12 12 H 1.09003 * 109.47037 * 327.32141 * 11 10 2 13 13 C 1.53001 * 109.47248 * 87.32275 * 11 10 2 14 14 N 1.46901 * 109.47103 * 207.32344 * 11 10 2 15 15 C 1.46848 * 110.99938 * 188.71656 * 14 11 10 16 16 C 1.53038 * 109.52257 * 174.15902 * 15 14 11 17 17 C 1.53125 * 109.30834 * 59.16250 * 16 15 14 18 18 C 1.53115 * 109.16078 * 302.40194 * 17 16 15 19 19 H 1.08998 * 109.50317 * 297.64248 * 18 17 16 20 20 C 1.50693 * 109.50827 * 177.55370 * 18 17 16 21 21 H 1.07995 * 120.00437 * 267.30575 * 20 18 17 22 22 C 1.37883 * 119.99784 * 87.57360 * 20 18 17 23 23 N 1.31508 * 120.00226 * 185.64353 * 22 20 18 24 24 Si 1.86799 * 119.99801 * 5.64496 * 22 20 18 25 25 H 1.48496 * 109.47303 * 93.27840 * 24 22 20 26 26 H 1.48507 * 109.46872 * 213.27958 * 24 22 20 27 27 H 1.48502 * 109.47163 * 333.27476 * 24 22 20 28 28 C 1.46846 * 111.00079 * 64.50977 * 14 11 10 29 29 H 1.08991 * 109.47026 * 270.23848 * 1 2 3 30 30 H 1.08998 * 109.46758 * 30.23870 * 1 2 3 31 31 H 1.08994 * 109.46683 * 150.23368 * 1 2 3 32 32 H 1.07998 * 119.99785 * 0.02562 * 3 2 1 33 33 H 1.08006 * 120.00115 * 179.76623 * 4 3 2 34 34 H 1.07997 * 120.00054 * 180.02562 * 9 5 4 35 35 H 1.09000 * 109.46709 * 60.00046 * 13 11 10 36 36 H 1.09000 * 109.47293 * 180.02562 * 13 11 10 37 37 H 1.09003 * 109.47087 * 300.00159 * 13 11 10 38 38 H 1.08994 * 109.46684 * 294.17619 * 15 14 11 39 39 H 1.09003 * 109.46020 * 54.14615 * 15 14 11 40 40 H 1.09001 * 109.50617 * 179.12078 * 16 15 14 41 41 H 1.09000 * 109.50847 * 299.20286 * 16 15 14 42 42 H 1.09007 * 109.55526 * 182.48281 * 17 16 15 43 43 H 1.08999 * 109.49380 * 62.29220 * 17 16 15 44 44 H 0.97002 * 120.00294 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.46514 * 65.82167 * 28 14 11 46 46 H 1.08995 * 109.46258 * 305.85936 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 -0.0052 5 6 4.2717 0.0000 -0.0060 6 7 5.7519 0.0000 -0.0121 7 8 6.3609 -1.0548 -0.0124 8 8 6.3609 1.0548 -0.0169 9 6 3.5807 -1.1970 -0.0007 10 6 2.1981 -1.1970 0.0049 11 6 1.4446 -2.5020 0.0098 12 1 0.5136 -2.3820 0.5638 13 6 1.1318 -2.9156 -1.4297 14 7 2.2652 -3.5388 0.6499 15 6 1.6555 -4.8652 0.4906 16 6 2.6043 -5.9334 1.0392 17 6 2.8814 -5.6527 2.5188 18 6 3.4700 -4.2465 2.6619 19 1 4.4208 -4.1943 2.1315 20 6 3.6900 -3.9391 4.1207 21 1 2.9222 -3.4340 4.6879 22 6 4.8737 -4.2978 4.7299 23 7 5.0233 -4.1309 6.0258 24 14 6.2650 -5.0210 3.7146 25 1 7.1829 -3.9345 3.2879 26 1 7.0135 -6.0086 4.5331 27 1 5.7045 -5.6949 2.5159 28 6 2.4962 -3.2272 2.0662 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8878 -0.5175 31 1 -0.3632 -0.8920 -0.5102 32 1 1.6584 2.1327 0.0004 33 1 4.1205 2.1327 -0.0090 34 1 4.1207 -2.1322 -0.0009 35 1 2.0629 -3.0357 -1.9836 36 1 0.5864 -3.8594 -1.4262 37 1 0.5230 -2.1463 -1.9047 38 1 0.7137 -4.9002 1.0382 39 1 1.4681 -5.0542 -0.5664 40 1 2.1449 -6.9163 0.9351 41 1 3.5411 -5.9087 0.4825 42 1 3.5914 -6.3855 2.9024 43 1 1.9503 -5.7169 3.0818 44 1 5.8562 -4.3829 6.4544 45 1 1.5504 -3.2698 2.6064 46 1 2.9193 -2.2265 2.1535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:19 Heat of formation + Delta-G solvation = 16.497225 kcal Electronic energy + Delta-G solvation = -28084.147277 eV Core-core repulsion = 24362.517019 eV Total energy + Delta-G solvation = -3721.630258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97302 -40.32533 -38.37557 -36.32438 -35.06834 -33.44101 -32.55825 -30.99300 -30.46226 -29.20746 -28.63432 -25.27546 -24.98092 -24.24382 -23.17680 -21.96883 -21.10234 -20.29054 -18.96272 -18.61815 -18.38750 -17.28899 -16.93938 -16.30631 -15.78705 -15.48738 -14.64470 -14.51224 -14.28626 -14.26611 -13.88997 -13.69255 -13.03003 -12.93108 -12.73396 -12.57331 -12.54952 -12.37087 -12.21038 -12.08309 -11.84095 -11.57740 -11.34147 -11.20572 -11.06148 -10.95596 -10.90075 -10.82665 -10.54604 -10.18529 -9.85579 -9.57877 -9.38602 -9.31828 -9.08710 -8.91680 -8.47217 -8.00564 -6.06283 -4.06198 -0.03420 0.93647 1.45091 1.61428 3.21747 3.37298 3.46207 3.50198 4.00856 4.26205 4.37921 4.47853 4.54405 4.69007 4.82704 5.04391 5.09157 5.13442 5.22894 5.25327 5.29656 5.38656 5.47416 5.50624 5.56452 5.64674 5.68765 5.81275 5.83138 5.85127 5.95053 6.05166 6.11911 6.16205 6.22844 6.32174 6.34511 6.44042 6.61147 6.62789 6.79678 6.88013 7.24490 7.39168 7.46026 7.55359 7.84121 7.85938 8.52178 8.97001 9.57706 11.06628 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.005845 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.264906 B = 4789.464916 C = 6285.780706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.033 4.033 3 C -0.125 4.125 4 C -0.058 4.058 5 C -0.053 4.053 6 N 0.031 4.969 7 O -0.152 6.152 8 O -0.174 6.174 9 C -0.017 4.017 10 C -0.073 4.073 11 C 0.119 3.881 12 H 0.056 0.944 13 C -0.147 4.147 14 N -0.539 5.539 15 C 0.061 3.939 16 C -0.121 4.121 17 C -0.113 4.113 18 C 0.022 3.978 19 H 0.040 0.960 20 C -0.516 4.516 21 H 0.069 0.931 22 C 0.074 3.926 23 N -0.900 5.900 24 Si 0.871 3.129 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.257 1.257 28 C 0.072 3.928 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.263 0.737 45 H 0.025 0.975 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 7.005 -16.457 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.034 4.034 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.136 4.136 6 N 0.550 4.450 7 O -0.370 6.370 8 O -0.387 6.387 9 C -0.036 4.036 10 C -0.074 4.074 11 C 0.010 3.990 12 H 0.074 0.926 13 C -0.204 4.204 14 N -0.264 5.264 15 C -0.067 4.067 16 C -0.159 4.159 17 C -0.151 4.151 18 C 0.002 3.998 19 H 0.058 0.942 20 C -0.554 4.554 21 H 0.087 0.913 22 C -0.128 4.128 23 N -0.538 5.538 24 Si 0.698 3.302 25 H -0.199 1.199 26 H -0.216 1.216 27 H -0.181 1.181 28 C -0.055 4.055 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.353 6.991 -16.528 21.235 hybrid contribution 0.549 -0.266 0.233 0.652 sum -10.804 6.725 -16.295 20.676 Atomic orbital electron populations 1.21002 0.90066 1.03664 1.03490 1.20188 0.97066 0.92341 0.93800 1.20945 0.92418 0.98393 1.02576 1.20970 0.94684 0.96957 0.95075 1.21141 0.79312 0.97069 1.16090 1.43609 1.03689 1.00394 0.97331 1.94597 1.69049 1.20491 1.52852 1.94485 1.69235 1.20875 1.54098 1.21116 0.94308 0.97680 0.90529 1.19667 0.92276 0.94898 1.00544 1.20488 0.93799 0.88525 0.96200 0.92601 1.21975 1.02323 1.01463 0.94637 1.62083 1.46127 1.01072 1.17154 1.22090 0.95808 0.88895 0.99897 1.21690 0.99208 0.96222 0.98750 1.21908 1.00468 1.00160 0.92591 1.19147 0.94407 0.90016 0.96197 0.94193 1.20909 1.02629 1.39152 0.92727 0.91328 1.25008 0.98342 0.94759 0.94647 1.69912 1.26285 1.48315 1.09288 0.86936 0.82665 0.79739 0.80903 1.19923 1.21649 1.18106 1.22276 0.98881 1.00515 0.83792 0.89896 0.90706 0.90413 0.83898 0.83335 0.81517 0.91443 0.91412 0.92247 0.95325 0.91159 0.92806 0.91837 0.92910 0.93235 0.92686 0.95628 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 9.20 36.01 0.33 -0.57 16 2 C -0.03 -0.34 5.88 -104.62 -0.62 -0.95 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.06 -0.69 9.56 -39.59 -0.38 -1.07 16 5 C -0.05 -0.81 6.85 -79.95 -0.55 -1.36 16 6 N 0.03 0.55 4.45 33.96 0.15 0.70 16 7 O -0.15 -2.98 18.45 -29.46 -0.54 -3.53 16 8 O -0.17 -3.05 18.45 -29.46 -0.54 -3.59 16 9 C -0.02 -0.26 7.56 -39.58 -0.30 -0.56 16 10 C -0.07 -0.92 4.16 -104.62 -0.44 -1.35 16 11 C 0.12 1.44 1.60 -68.87 -0.11 1.33 16 12 H 0.06 0.65 6.85 -51.93 -0.36 0.30 16 13 C -0.15 -1.41 8.48 37.16 0.32 -1.09 16 14 N -0.54 -8.36 3.50 -228.08 -0.80 -9.16 16 15 C 0.06 0.86 5.02 -3.83 -0.02 0.84 16 16 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 17 C -0.11 -2.32 5.04 -26.61 -0.13 -2.46 16 18 C 0.02 0.50 1.79 -91.69 -0.16 0.33 16 19 H 0.04 0.97 5.56 -51.93 -0.29 0.68 16 20 C -0.52 -14.33 8.86 -34.44 -0.31 -14.64 16 21 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 22 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 23 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 24 Si 0.87 22.09 26.55 -169.99 -4.51 17.58 16 25 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.26 -6.15 6.04 56.52 0.34 -5.81 16 28 C 0.07 1.40 4.33 -3.83 -0.02 1.38 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.08 0.52 5.63 -51.93 -0.29 0.22 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.53 7.61 -52.48 -0.40 1.13 16 34 H 0.17 2.84 6.86 -52.49 -0.36 2.48 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.60 6.19 -51.93 -0.32 0.28 16 37 H 0.06 0.46 7.14 -51.93 -0.37 0.09 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.83 5.83 -51.93 -0.30 0.53 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.15 7.09 -51.92 -0.37 0.78 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.31 6.23 -51.93 -0.32 0.98 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -31.89 359.69 -9.88 -41.77 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.80 Total: -0.39 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.02 Total: -21.81 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.13 Total: -35.45 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -1.09 Total: -7.12 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.51 Total: 17.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.89 -9.88 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.265 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds