Wall clock time and date at job start Tue Mar 31 2020 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 120.00188 * 2 1 4 4 C 1.38205 * 119.99971 * 180.24739 * 3 2 1 5 5 C 1.38259 * 120.00173 * 359.79265 * 4 3 2 6 6 N 1.48018 * 119.99700 * 179.97438 * 5 4 3 7 7 O 1.21805 * 119.99723 * 179.97438 * 6 5 4 8 8 O 1.21792 * 120.00583 * 359.97438 * 6 5 4 9 9 C 1.38210 * 120.00106 * 359.95361 * 5 4 3 10 10 C 1.38215 * 120.00043 * 179.76331 * 2 1 3 11 11 C 1.50693 * 119.99938 * 0.02562 * 10 2 1 12 12 H 1.09003 * 109.47037 * 327.32141 * 11 10 2 13 13 C 1.53001 * 109.47248 * 87.32275 * 11 10 2 14 14 N 1.46901 * 109.47103 * 207.32344 * 11 10 2 15 15 C 1.46848 * 110.99938 * 188.71656 * 14 11 10 16 16 C 1.53038 * 109.52257 * 174.15902 * 15 14 11 17 17 C 1.53125 * 109.30834 * 59.16250 * 16 15 14 18 18 C 1.53115 * 109.16078 * 302.40194 * 17 16 15 19 19 H 1.08998 * 109.50317 * 297.64248 * 18 17 16 20 20 C 1.50693 * 109.50827 * 177.55370 * 18 17 16 21 21 H 1.07995 * 120.00437 * 267.30575 * 20 18 17 22 22 C 1.37883 * 119.99784 * 87.57360 * 20 18 17 23 23 N 1.31508 * 120.00226 * 185.64353 * 22 20 18 24 24 Si 1.86799 * 119.99801 * 5.64496 * 22 20 18 25 25 H 1.48496 * 109.47303 * 93.27840 * 24 22 20 26 26 H 1.48507 * 109.46872 * 213.27958 * 24 22 20 27 27 H 1.48502 * 109.47163 * 333.27476 * 24 22 20 28 28 C 1.46846 * 111.00079 * 64.50977 * 14 11 10 29 29 H 1.08991 * 109.47026 * 270.23848 * 1 2 3 30 30 H 1.08998 * 109.46758 * 30.23870 * 1 2 3 31 31 H 1.08994 * 109.46683 * 150.23368 * 1 2 3 32 32 H 1.07998 * 119.99785 * 0.02562 * 3 2 1 33 33 H 1.08006 * 120.00115 * 179.76623 * 4 3 2 34 34 H 1.07997 * 120.00054 * 180.02562 * 9 5 4 35 35 H 1.09000 * 109.46709 * 60.00046 * 13 11 10 36 36 H 1.09000 * 109.47293 * 180.02562 * 13 11 10 37 37 H 1.09003 * 109.47087 * 300.00159 * 13 11 10 38 38 H 1.08994 * 109.46684 * 294.17619 * 15 14 11 39 39 H 1.09003 * 109.46020 * 54.14615 * 15 14 11 40 40 H 1.09001 * 109.50617 * 179.12078 * 16 15 14 41 41 H 1.09000 * 109.50847 * 299.20286 * 16 15 14 42 42 H 1.09007 * 109.55526 * 182.48281 * 17 16 15 43 43 H 1.08999 * 109.49380 * 62.29220 * 17 16 15 44 44 H 0.97002 * 120.00294 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.46514 * 65.82167 * 28 14 11 46 46 H 1.08995 * 109.46258 * 305.85936 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 -0.0052 5 6 4.2717 0.0000 -0.0060 6 7 5.7519 0.0000 -0.0121 7 8 6.3609 -1.0548 -0.0124 8 8 6.3609 1.0548 -0.0169 9 6 3.5807 -1.1970 -0.0007 10 6 2.1981 -1.1970 0.0049 11 6 1.4446 -2.5020 0.0098 12 1 0.5136 -2.3820 0.5638 13 6 1.1318 -2.9156 -1.4297 14 7 2.2652 -3.5388 0.6499 15 6 1.6555 -4.8652 0.4906 16 6 2.6043 -5.9334 1.0392 17 6 2.8814 -5.6527 2.5188 18 6 3.4700 -4.2465 2.6619 19 1 4.4208 -4.1943 2.1315 20 6 3.6900 -3.9391 4.1207 21 1 2.9222 -3.4340 4.6879 22 6 4.8737 -4.2978 4.7299 23 7 5.0233 -4.1309 6.0258 24 14 6.2650 -5.0210 3.7146 25 1 7.1829 -3.9345 3.2879 26 1 7.0135 -6.0086 4.5331 27 1 5.7045 -5.6949 2.5159 28 6 2.4962 -3.2272 2.0662 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8878 -0.5175 31 1 -0.3632 -0.8920 -0.5102 32 1 1.6584 2.1327 0.0004 33 1 4.1205 2.1327 -0.0090 34 1 4.1207 -2.1322 -0.0009 35 1 2.0629 -3.0357 -1.9836 36 1 0.5864 -3.8594 -1.4262 37 1 0.5230 -2.1463 -1.9047 38 1 0.7137 -4.9002 1.0382 39 1 1.4681 -5.0542 -0.5664 40 1 2.1449 -6.9163 0.9351 41 1 3.5411 -5.9087 0.4825 42 1 3.5914 -6.3855 2.9024 43 1 1.9503 -5.7169 3.0818 44 1 5.8562 -4.3829 6.4544 45 1 1.5504 -3.2698 2.6064 46 1 2.9193 -2.2265 2.1535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:18 Heat of formation + Delta-G solvation = -1.901120 kcal Electronic energy + Delta-G solvation = -28084.945089 eV Core-core repulsion = 24362.517019 eV Total energy + Delta-G solvation = -3722.428070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.27063 -41.37223 -39.64088 -37.69622 -36.41480 -34.74388 -34.11747 -32.43160 -31.80812 -30.33089 -29.58932 -26.93922 -26.14305 -25.46757 -24.38917 -23.20181 -22.40265 -21.52091 -20.49061 -19.85930 -19.69006 -18.97209 -18.62411 -17.50771 -16.68883 -16.67470 -16.14625 -15.84595 -15.56575 -15.21140 -14.99512 -14.92588 -14.64011 -14.38197 -14.21845 -13.70137 -13.53320 -13.40337 -13.11481 -13.05092 -12.98848 -12.91703 -12.78891 -12.68859 -12.53736 -12.34453 -12.24868 -12.22970 -11.95464 -11.76320 -11.67843 -11.35306 -11.08151 -10.82154 -10.67135 -10.24948 -10.02483 -9.22595 -8.34990 -6.36462 -1.23170 0.00662 0.29285 0.43361 1.27781 1.34580 1.42499 2.27082 2.30322 2.87055 3.04379 3.30597 3.53032 3.68980 3.85491 3.88045 4.07219 4.09872 4.20034 4.23574 4.30105 4.34612 4.49339 4.59006 4.64061 4.65607 4.75433 4.78212 4.81193 4.83924 4.85261 4.91875 4.95813 4.98872 5.08218 5.14576 5.20593 5.21653 5.26266 5.30018 5.36583 5.55159 5.59356 5.62621 5.75150 6.10762 6.25596 6.33635 6.46123 6.71424 7.29834 8.81782 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.005845 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.264906 B = 4789.464916 C = 6285.780706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.019 4.019 3 C -0.111 4.111 4 C -0.057 4.057 5 C -0.080 4.080 6 N 0.033 4.967 7 O -0.224 6.224 8 O -0.157 6.157 9 C -0.038 4.038 10 C -0.084 4.084 11 C 0.118 3.882 12 H 0.071 0.929 13 C -0.141 4.141 14 N -0.548 5.548 15 C 0.061 3.939 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.018 3.982 19 H 0.024 0.976 20 C -0.513 4.513 21 H 0.032 0.968 22 C 0.019 3.981 23 N -0.947 5.947 24 Si 0.927 3.073 25 H -0.284 1.284 26 H -0.283 1.283 27 H -0.236 1.236 28 C 0.091 3.909 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.166 0.834 34 H 0.136 0.864 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.046 0.954 44 H 0.264 0.736 45 H 0.019 0.981 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 7.947 -19.378 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.020 4.020 3 C -0.129 4.129 4 C -0.076 4.076 5 C -0.164 4.164 6 N 0.545 4.455 7 O -0.426 6.426 8 O -0.378 6.378 9 C -0.057 4.057 10 C -0.085 4.085 11 C 0.011 3.989 12 H 0.088 0.912 13 C -0.198 4.198 14 N -0.273 5.273 15 C -0.066 4.066 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.001 4.001 19 H 0.042 0.958 20 C -0.551 4.551 21 H 0.050 0.950 22 C -0.178 4.178 23 N -0.588 5.588 24 Si 0.752 3.248 25 H -0.210 1.210 26 H -0.209 1.209 27 H -0.159 1.159 28 C -0.037 4.037 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.183 0.817 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.752 7.794 -19.480 25.648 hybrid contribution 1.416 -0.349 1.164 1.866 sum -13.336 7.445 -18.315 23.848 Atomic orbital electron populations 1.21153 0.87072 1.05760 1.04296 1.20659 0.99059 0.91386 0.90889 1.21490 0.91272 1.00070 1.00057 1.21354 0.95903 0.96154 0.94173 1.21395 0.77189 0.98683 1.19087 1.44050 1.05107 0.99832 0.96470 1.94592 1.70276 1.21057 1.56698 1.94416 1.70299 1.20678 1.52444 1.20975 0.95537 0.96593 0.92641 1.19869 0.91175 0.96494 1.00957 1.20661 0.93374 0.87209 0.97703 0.91160 1.21968 1.02356 1.03080 0.92374 1.61956 1.48281 1.02887 1.14184 1.22186 0.95156 0.87234 1.02032 1.21650 0.99908 0.98759 0.94995 1.21755 0.99489 0.97544 0.96091 1.19100 0.95108 0.92960 0.92927 0.95823 1.21263 1.01323 1.37406 0.95150 0.94997 1.25760 1.00855 0.95732 0.95476 1.70038 1.27113 1.50656 1.10979 0.86027 0.79598 0.78928 0.80227 1.21011 1.20930 1.15939 1.21794 0.97227 0.98211 0.86441 0.89417 0.87672 0.89417 0.79399 0.81665 0.84607 0.92632 0.89978 0.89602 0.94465 0.87610 0.89774 0.92588 0.94750 0.93569 0.92653 0.96260 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.20 71.24 0.66 -0.46 16 2 C -0.02 -0.32 5.88 -19.86 -0.12 -0.43 16 3 C -0.11 -1.66 9.70 22.27 0.22 -1.45 16 4 C -0.06 -1.24 9.56 22.27 0.21 -1.02 16 5 C -0.08 -2.48 6.85 36.37 0.25 -2.23 16 6 N 0.03 1.24 4.45 -46.46 -0.21 1.03 16 7 O -0.22 -9.64 18.45 18.88 0.35 -9.29 16 8 O -0.16 -5.61 18.45 18.90 0.35 -5.26 16 9 C -0.04 -1.18 7.56 22.27 0.17 -1.01 16 10 C -0.08 -1.96 4.16 -19.87 -0.08 -2.05 16 11 C 0.12 2.56 1.60 44.17 0.07 2.63 16 12 H 0.07 1.36 6.85 -2.39 -0.02 1.35 16 13 C -0.14 -2.13 8.48 71.98 0.61 -1.52 16 14 N -0.55 -16.28 3.50 -875.51 -3.06 -19.35 16 15 C 0.06 1.55 5.02 86.33 0.43 1.98 16 16 C -0.12 -3.52 6.09 30.65 0.19 -3.33 16 17 C -0.11 -4.53 5.04 30.67 0.15 -4.37 16 18 C 0.02 0.87 1.79 -11.49 -0.02 0.84 16 19 H 0.02 1.19 5.56 -2.39 -0.01 1.18 16 20 C -0.51 -29.90 8.86 25.60 0.23 -29.68 16 21 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 22 C 0.02 1.15 5.47 84.66 0.46 1.61 16 23 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 24 Si 0.93 47.60 26.55 68.60 1.82 49.42 16 25 H -0.28 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.24 -11.20 6.04 99.48 0.60 -10.60 16 28 C 0.09 3.57 4.33 86.33 0.37 3.95 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.37 8.09 -2.39 -0.02 0.35 16 31 H 0.09 0.65 5.63 -2.39 -0.01 0.64 16 32 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.17 2.98 7.61 -2.91 -0.02 2.96 16 34 H 0.14 5.01 6.86 -2.91 -0.02 4.99 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.02 6.19 -2.39 -0.01 1.01 16 37 H 0.09 0.88 7.14 -2.39 -0.02 0.86 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 2.01 5.83 -2.39 -0.01 2.00 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.03 1.49 7.09 -2.38 -0.02 1.48 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 46 H 0.04 1.91 6.23 -2.39 -0.01 1.89 16 Total: -1.00 -76.97 359.69 4.23 -72.74 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.88 Total: 8.06 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.80 Total: -36.53 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.97 Total: -79.15 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.70 Total: -14.55 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.82 Total: 49.42 kcal Total: -76.97 4.23 -72.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.839 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds