Wall clock time and date at job start Tue Mar 31 2020 13:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 120.00242 * 2 1 4 4 C 1.38235 * 120.00101 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00125 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99809 * 359.95801 * 4 3 2 7 7 C 1.38242 * 120.00269 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00091 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.47042 * 89.99777 * 8 7 6 10 10 C 1.34776 * 120.00022 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99824 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00043 * 179.72649 * 10 9 8 13 13 C 1.47422 * 125.64872 * 359.69983 * 12 10 9 14 14 C 1.55128 * 104.72474 * 155.81529 * 13 12 10 15 15 C 1.55160 * 101.48437 * 37.29326 * 14 13 12 16 16 O 1.42902 * 110.72127 * 82.69831 * 15 14 13 17 17 C 1.50698 * 110.86761 * 205.90008 * 15 14 13 18 18 H 1.08009 * 120.00114 * 118.67484 * 17 15 14 19 19 C 1.37873 * 120.00096 * 298.66665 * 17 15 14 20 20 N 1.31515 * 119.99882 * 183.39034 * 19 17 15 21 21 Si 1.86798 * 120.00090 * 3.39581 * 19 17 15 22 22 H 1.48497 * 109.47237 * 84.83114 * 21 19 17 23 23 H 1.48501 * 109.47115 * 204.83353 * 21 19 17 24 24 H 1.48501 * 109.46771 * 324.83098 * 21 19 17 25 25 C 1.47028 * 125.64633 * 180.02562 * 12 10 9 26 26 C 1.38235 * 119.99768 * 0.25633 * 7 6 4 27 27 H 1.09003 * 109.47092 * 89.99277 * 1 2 3 28 28 H 1.08999 * 109.47224 * 210.00301 * 1 2 3 29 29 H 1.09009 * 109.47108 * 330.00013 * 1 2 3 30 30 H 1.07992 * 119.99807 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.46856 * 269.97983 * 5 4 3 32 32 H 1.08997 * 109.47094 * 29.97779 * 5 4 3 33 33 H 1.09000 * 109.46864 * 149.98099 * 5 4 3 34 34 H 1.07998 * 120.00129 * 179.97438 * 6 4 3 35 35 H 1.09005 * 109.47129 * 330.00141 * 8 7 6 36 36 H 1.09000 * 109.47177 * 210.00127 * 8 7 6 37 37 H 0.96998 * 120.00075 * 0.02562 * 9 8 7 38 38 H 1.09004 * 110.36170 * 274.74584 * 13 12 10 39 39 H 1.08997 * 110.36656 * 37.06317 * 13 12 10 40 40 H 1.09000 * 111.18829 * 279.18916 * 14 13 12 41 41 H 1.08996 * 110.90512 * 155.27349 * 14 13 12 42 42 H 0.96695 * 113.99942 * 185.02430 * 16 15 14 43 43 H 0.97008 * 119.99862 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.87980 * 300.43942 * 25 12 10 45 45 H 1.08996 * 109.88451 * 61.45097 * 25 12 10 46 46 H 1.07999 * 120.00129 * 179.72426 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5804 -1.1973 0.0001 8 6 4.3339 -2.5024 -0.0001 9 7 4.5786 -2.9252 1.3811 10 6 5.2408 -4.0730 1.6272 11 8 5.6354 -4.7573 0.7029 12 7 5.4708 -4.4591 2.8978 13 6 5.0612 -3.7223 4.1072 14 6 4.9776 -4.8025 5.2176 15 6 6.1761 -5.7168 4.8501 16 8 7.3963 -5.1837 5.3686 17 6 5.9540 -7.1204 5.3515 18 1 5.9047 -7.9422 4.6524 19 6 5.8139 -7.3556 6.7028 20 7 5.6869 -8.5873 7.1461 21 14 5.8044 -5.9250 7.9038 22 1 4.4311 -5.3681 7.9995 23 1 6.2407 -6.3990 9.2418 24 1 6.7339 -4.8705 7.4249 25 6 6.1775 -5.6817 3.3072 26 6 2.1981 -1.1972 -0.0052 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5139 30 1 1.6582 2.1324 0.0004 31 1 4.5157 2.8164 -1.0290 32 1 3.7451 3.2620 0.5124 33 1 5.2866 2.3719 0.5127 34 1 5.3516 -0.0002 -0.0010 35 1 5.2862 -2.3721 -0.5143 36 1 3.7446 -3.2621 -0.5136 37 1 4.2635 -2.3794 2.1184 38 1 5.8064 -2.9690 4.3629 39 1 4.0869 -3.2575 3.9565 40 1 4.0370 -5.3507 5.1638 41 1 5.1131 -4.3580 6.2035 42 1 8.1850 -5.6756 5.1023 43 1 5.5880 -8.7528 8.0969 44 1 5.6599 -6.5577 2.9161 45 1 7.2019 -5.6599 2.9354 46 1 1.6581 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596785488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:51 Heat of formation + Delta-G solvation = -74.366724 kcal Electronic energy + Delta-G solvation = -26432.538982 eV Core-core repulsion = 22706.968568 eV Total energy + Delta-G solvation = -3725.570414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45996 -40.54640 -39.32407 -36.23368 -36.16213 -34.50654 -34.39985 -33.14765 -31.71025 -30.01325 -28.49430 -27.65249 -27.58661 -26.27596 -24.11492 -21.87582 -21.63493 -21.61786 -21.07851 -19.62575 -18.98108 -17.50355 -17.17650 -17.09917 -16.77331 -16.64779 -16.48277 -15.72489 -15.21142 -15.07570 -15.00024 -14.80926 -14.70118 -14.23735 -14.04975 -13.99315 -13.91549 -13.79555 -13.67083 -13.32013 -13.21730 -13.12414 -12.85173 -12.67538 -12.47284 -12.36771 -12.16141 -11.91115 -11.91016 -11.84000 -11.35523 -10.96073 -10.79471 -10.37340 -10.30148 -9.66971 -9.51100 -9.46781 -8.35591 -6.51743 0.25210 0.42337 1.38794 1.47759 1.63045 1.69703 2.07007 2.40804 2.70811 3.00181 3.09667 3.53996 3.58990 3.76078 3.82277 3.91967 4.02228 4.22360 4.22581 4.33657 4.41680 4.42905 4.52472 4.52848 4.59919 4.67698 4.70816 4.79210 4.82489 4.86548 4.93252 4.99941 5.05964 5.07414 5.07470 5.23525 5.36186 5.38900 5.43769 5.51340 5.58816 5.60966 5.69123 6.03269 6.07540 6.08490 6.59263 6.93593 7.12133 7.29652 7.47695 8.78739 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.002759 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.606469 B =10144.766442 C =10363.929969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.103 4.103 8 C 0.185 3.815 9 N -0.725 5.725 10 C 0.716 3.284 11 O -0.638 6.638 12 N -0.630 5.630 13 C 0.111 3.889 14 C -0.127 4.127 15 C 0.218 3.782 16 O -0.571 6.571 17 C -0.552 4.552 18 H 0.034 0.966 19 C 0.035 3.965 20 N -0.938 5.938 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.309 1.309 24 H -0.212 1.212 25 C 0.123 3.877 26 C -0.118 4.118 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.377 0.623 43 H 0.268 0.732 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 25.740 -12.357 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.090 4.090 5 C -0.170 4.170 6 C -0.134 4.134 7 C -0.103 4.103 8 C 0.061 3.939 9 N -0.382 5.382 10 C 0.418 3.582 11 O -0.520 6.520 12 N -0.367 5.367 13 C -0.011 4.011 14 C -0.165 4.165 15 C 0.178 3.822 16 O -0.379 6.379 17 C -0.590 4.590 18 H 0.053 0.947 19 C -0.165 4.165 20 N -0.576 5.576 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.237 1.237 24 H -0.134 1.134 25 C -0.001 4.001 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.225 0.775 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.444 25.604 -12.739 29.819 hybrid contribution 0.349 -0.908 0.674 1.184 sum -8.095 24.696 -12.065 28.653 Atomic orbital electron populations 1.20838 0.89566 1.03575 1.03086 1.20188 0.97342 0.92726 0.98800 1.21254 0.93606 0.98307 1.00474 1.20194 0.94236 0.95839 0.98748 1.20836 1.00019 0.93061 1.03105 1.21101 1.00238 0.91468 1.00624 1.19701 0.93948 0.93717 1.02943 1.19984 0.99268 0.92878 0.81741 1.45022 1.60843 1.22898 1.09442 1.15597 0.79216 0.81846 0.81538 1.90864 1.59731 1.57499 1.43887 1.47608 1.59903 1.25122 1.04077 1.22430 1.01059 0.94466 0.83147 1.23052 0.98370 0.96441 0.98652 1.19792 0.83875 0.91088 0.87469 1.86434 1.16728 1.58408 1.76329 1.21414 1.52026 0.92562 0.92995 0.94728 1.25814 0.92158 0.98216 1.00334 1.70073 1.49710 1.22306 1.15508 0.86069 0.80231 0.81172 0.76000 1.19125 1.23719 1.13410 1.22335 0.95678 0.85565 0.96541 1.21102 0.93259 0.98520 1.00726 0.90337 0.91330 0.90302 0.84088 0.90325 0.90341 0.91199 0.85522 0.91381 0.91642 0.75632 0.89925 0.88471 0.90167 0.90084 0.77477 0.92281 0.93722 0.92499 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.49 16 2 C -0.09 -1.36 5.88 -19.86 -0.12 -1.48 16 3 C -0.12 -1.63 9.36 22.27 0.21 -1.43 16 4 C -0.09 -1.32 5.88 -19.87 -0.12 -1.44 16 5 C -0.11 -1.12 10.01 71.24 0.71 -0.41 16 6 C -0.12 -2.00 9.36 22.27 0.21 -1.79 16 7 C -0.10 -1.96 5.25 -19.86 -0.10 -2.06 16 8 C 0.18 4.33 5.80 85.63 0.50 4.82 16 9 N -0.73 -19.12 5.51 -482.30 -2.66 -21.77 16 10 C 0.72 25.80 8.49 179.05 1.52 27.32 16 11 O -0.64 -28.21 16.67 -3.99 -0.07 -28.28 16 12 N -0.63 -22.76 3.32 -829.29 -2.76 -25.52 16 13 C 0.11 3.32 6.58 86.93 0.57 3.89 16 14 C -0.13 -4.81 4.83 32.06 0.15 -4.65 16 15 C 0.22 9.55 0.67 -10.35 -0.01 9.55 16 16 O -0.57 -23.46 10.44 -148.98 -1.56 -25.01 16 17 C -0.55 -30.13 8.82 25.60 0.23 -29.91 16 18 H 0.03 2.14 7.82 -2.91 -0.02 2.11 16 19 C 0.04 1.95 5.47 84.65 0.46 2.42 16 20 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 21 Si 0.94 42.58 23.89 68.60 1.64 44.22 16 22 H -0.27 -11.22 7.08 99.48 0.70 -10.51 16 23 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.21 -8.98 5.50 99.48 0.55 -8.43 16 25 C 0.12 5.18 6.21 86.73 0.54 5.72 16 26 C -0.12 -2.09 9.36 22.27 0.21 -1.88 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 29 H 0.08 0.63 8.09 -2.38 -0.02 0.61 16 30 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.07 1.67 8.09 -2.38 -0.02 1.65 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.41 8.86 6.93 -92.71 -0.64 8.22 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.10 2.23 7.28 -2.39 -0.02 2.21 16 40 H 0.08 3.15 8.04 -2.39 -0.02 3.13 16 41 H 0.08 2.98 5.00 -2.39 -0.01 2.97 16 42 H 0.38 13.71 9.08 -74.06 -0.67 13.04 16 43 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 44 H 0.04 2.10 7.66 -2.38 -0.02 2.09 16 45 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 46 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -72.18 370.76 0.10 -72.08 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.48 Total: 32.79 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.68 Total: 8.19 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.11 Total: -103.99 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.62 Total: -53.29 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.64 Total: 44.22 kcal Total: -72.18 0.10 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596785488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds