Wall clock time and date at job start Tue Mar 31 2020 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 N 1.46500 * 109.47298 * 89.99945 * 8 7 6 10 10 C 1.34770 * 119.99686 * 180.02562 * 9 8 7 11 11 O 1.21347 * 120.00614 * 359.97438 * 10 9 8 12 12 C 1.49454 * 119.99909 * 180.02562 * 10 9 8 13 13 O 1.21354 * 119.99785 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00257 * 180.02562 * 12 10 9 15 15 C 1.46500 * 120.00034 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47131 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00166 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99848 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99842 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00136 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47408 * 89.99409 * 22 20 18 24 24 H 1.48493 * 109.47175 * 209.99845 * 22 20 18 25 25 H 1.48500 * 109.46852 * 329.99674 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 27 27 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 28 28 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 29 29 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 30 30 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 31 31 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 32 32 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 33 33 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 34 34 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 35 35 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 36 36 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 37 37 H 0.96993 * 119.99824 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99756 * 359.97438 * 14 12 10 39 39 H 1.08997 * 109.46525 * 299.99848 * 15 14 12 40 40 H 1.08996 * 109.47242 * 59.99517 * 15 14 12 41 41 H 1.09002 * 109.47518 * 300.00028 * 16 15 14 42 42 H 1.09013 * 109.47073 * 59.99737 * 16 15 14 43 43 H 1.09003 * 109.47256 * 300.00056 * 17 16 15 44 44 H 1.09001 * 109.46864 * 60.00436 * 17 16 15 45 45 H 0.97008 * 119.99683 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.00279 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 7 4.5833 -2.9278 1.3767 10 6 5.2472 -4.0755 1.6183 11 8 5.6380 -4.7567 0.6933 12 6 5.5010 -4.5098 3.0257 13 8 5.1097 -3.8288 3.9508 14 7 6.1653 -5.6573 3.2674 15 6 6.4146 -6.0828 4.6469 16 6 7.1801 -7.4074 4.6416 17 6 7.4410 -7.8515 6.0823 18 6 8.1956 -9.1560 6.0771 19 1 8.4628 -9.6215 5.1399 20 6 8.5458 -9.7546 7.2687 21 7 9.2039 -10.8932 7.2642 22 14 8.0844 -8.9490 8.8897 23 1 6.7504 -9.4369 9.3230 24 1 9.0964 -9.2945 9.9200 25 1 8.0394 -7.4750 8.7148 26 6 2.1982 -1.1972 0.0018 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.6582 2.1324 -0.0005 31 1 4.5165 2.8160 -1.0279 32 1 3.7446 3.2623 0.5127 33 1 5.2861 2.3723 0.5146 34 1 5.3517 -0.0001 0.0020 35 1 3.7430 -3.2610 -0.5159 36 1 5.2845 -2.3711 -0.5200 37 1 4.2706 -2.3834 2.1161 38 1 6.4784 -6.2015 2.5279 39 1 7.0048 -5.3236 5.1601 40 1 5.4641 -6.2149 5.1638 41 1 6.5895 -8.1664 4.1284 42 1 8.1307 -7.2757 4.1245 43 1 8.0318 -7.0925 6.5952 44 1 6.4907 -7.9832 6.5997 45 1 9.4500 -11.3145 8.1026 46 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597257038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:32 Heat of formation + Delta-G solvation = -73.218376 kcal Electronic energy + Delta-G solvation = -24693.194999 eV Core-core repulsion = 20967.674381 eV Total energy + Delta-G solvation = -3725.520618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.76767 -40.02106 -38.54037 -36.03920 -35.38740 -33.97960 -33.35990 -32.45995 -31.48060 -28.29625 -27.70603 -27.16148 -26.84812 -24.28313 -22.35786 -21.24712 -21.19869 -20.77980 -20.08179 -18.48700 -17.01586 -16.75510 -16.70955 -16.47309 -15.92842 -15.66707 -15.30945 -14.92586 -14.56909 -14.42462 -14.15754 -13.90111 -13.70281 -13.66325 -13.41570 -13.29806 -13.00708 -12.98632 -12.72771 -12.28774 -12.08112 -12.05733 -11.97121 -11.74097 -11.46645 -11.45169 -11.11598 -10.92228 -10.18825 -9.98981 -9.79708 -9.59649 -9.54650 -9.24419 -9.12644 -9.07048 -8.99851 -8.56395 -6.06780 -4.05748 0.76129 0.91308 1.36563 2.34114 3.17005 3.22926 3.30359 3.38046 3.41554 3.72001 4.10830 4.28391 4.32272 4.43395 4.45988 4.67918 4.84405 4.84939 4.93287 5.05376 5.11974 5.15125 5.17942 5.24457 5.26935 5.40768 5.43112 5.43831 5.56734 5.66147 5.74786 5.89588 5.93056 6.06977 6.07030 6.15904 6.16556 6.38753 6.53268 6.54793 6.73787 6.86034 7.19904 7.33283 7.33647 7.66154 7.74584 7.98369 8.49624 8.97327 9.55045 11.06395 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.001763 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.365791 B =15875.862406 C =16000.243446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.113 4.113 4 C -0.084 4.084 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.103 4.103 8 C 0.160 3.840 9 N -0.700 5.700 10 C 0.508 3.492 11 O -0.519 6.519 12 C 0.501 3.499 13 O -0.527 6.527 14 N -0.691 5.691 15 C 0.111 3.889 16 C -0.115 4.115 17 C -0.011 4.011 18 C -0.523 4.523 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C -0.105 4.105 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.414 0.586 38 H 0.413 0.587 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 27.181 -17.830 36.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.084 4.084 5 C -0.172 4.172 6 C -0.123 4.123 7 C -0.103 4.103 8 C 0.038 3.962 9 N -0.354 5.354 10 C 0.289 3.711 11 O -0.394 6.394 12 C 0.281 3.719 13 O -0.403 6.403 14 N -0.343 5.343 15 C -0.011 4.011 16 C -0.153 4.153 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.123 4.123 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.626 27.014 -17.708 35.882 hybrid contribution -0.169 0.253 0.890 0.940 sum -15.795 27.267 -16.819 35.719 Atomic orbital electron populations 1.20808 0.90914 1.03042 1.02473 1.19920 0.96247 0.92935 0.99294 1.20992 0.93543 0.97680 1.00869 1.19917 0.93819 0.95363 0.99294 1.20809 1.00064 0.93894 1.02472 1.20981 0.99939 0.91293 1.00119 1.19771 0.93823 0.94239 1.02484 1.20295 1.00125 0.92929 0.82870 1.45826 1.56726 1.23412 1.09412 1.20330 0.79039 0.81779 0.89947 1.90773 1.49753 1.53430 1.45469 1.20002 0.80208 0.82710 0.88974 1.90762 1.50586 1.53775 1.45220 1.46016 1.54788 1.22371 1.11124 1.21847 1.00987 0.98094 0.80148 1.21745 0.99175 0.93139 1.01276 1.19506 0.96749 0.97315 0.91278 1.21092 1.35649 1.04760 0.94593 0.90929 1.25032 0.94557 0.94666 0.99228 1.69915 1.39714 1.17385 1.27064 0.86773 0.78379 0.80546 0.83574 1.20245 1.21361 1.18916 1.20984 0.93286 0.97943 1.00118 0.91036 0.91306 0.91433 0.85973 0.91034 0.91433 0.91307 0.85741 0.89973 0.89970 0.74928 0.75122 0.91102 0.91112 0.91797 0.91777 0.96238 0.96671 0.92685 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.08 -0.57 5.88 -104.62 -0.62 -1.19 16 3 C -0.11 -0.75 9.36 -39.58 -0.37 -1.12 16 4 C -0.08 -0.57 5.88 -104.63 -0.62 -1.19 16 5 C -0.12 -0.56 10.01 36.00 0.36 -0.20 16 6 C -0.10 -0.77 9.36 -39.59 -0.37 -1.14 16 7 C -0.10 -0.78 5.25 -104.62 -0.55 -1.33 16 8 C 0.16 1.33 5.80 -5.19 -0.03 1.30 16 9 N -0.70 -7.01 5.54 -61.91 -0.34 -7.35 16 10 C 0.51 6.47 7.89 -11.59 -0.09 6.38 16 11 O -0.52 -7.55 16.48 5.50 0.09 -7.46 16 12 C 0.50 7.22 7.89 -11.58 -0.09 7.13 16 13 O -0.53 -8.63 16.48 5.49 0.09 -8.54 16 14 N -0.69 -9.92 5.55 -60.73 -0.34 -10.26 16 15 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 16 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 17 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 22 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 26 C -0.10 -0.77 9.36 -39.58 -0.37 -1.14 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.07 0.27 8.08 -51.94 -0.42 -0.15 16 30 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.27 8.09 -51.93 -0.42 -0.14 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.41 3.96 7.94 -40.82 -0.32 3.64 16 38 H 0.41 5.44 7.94 -40.82 -0.32 5.12 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -32.91 391.51 -8.91 -41.82 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.33 Total: 2.66 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.09 Total: -6.76 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.09 Total: -44.53 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.18 Total: -16.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.91 -8.91 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds