Wall clock time and date at job start Tue Mar 31 2020 13:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 N 1.46500 * 109.47298 * 89.99945 * 8 7 6 10 10 C 1.34770 * 119.99686 * 180.02562 * 9 8 7 11 11 O 1.21347 * 120.00614 * 359.97438 * 10 9 8 12 12 C 1.49454 * 119.99909 * 180.02562 * 10 9 8 13 13 O 1.21354 * 119.99785 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00257 * 180.02562 * 12 10 9 15 15 C 1.46500 * 120.00034 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47131 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00166 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99848 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99842 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00136 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47408 * 89.99409 * 22 20 18 24 24 H 1.48493 * 109.47175 * 209.99845 * 22 20 18 25 25 H 1.48500 * 109.46852 * 329.99674 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 27 27 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 28 28 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 29 29 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 30 30 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 31 31 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 32 32 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 33 33 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 34 34 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 35 35 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 36 36 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 37 37 H 0.96993 * 119.99824 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99756 * 359.97438 * 14 12 10 39 39 H 1.08997 * 109.46525 * 299.99848 * 15 14 12 40 40 H 1.08996 * 109.47242 * 59.99517 * 15 14 12 41 41 H 1.09002 * 109.47518 * 300.00028 * 16 15 14 42 42 H 1.09013 * 109.47073 * 59.99737 * 16 15 14 43 43 H 1.09003 * 109.47256 * 300.00056 * 17 16 15 44 44 H 1.09001 * 109.46864 * 60.00436 * 17 16 15 45 45 H 0.97008 * 119.99683 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.00279 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 7 4.5833 -2.9278 1.3767 10 6 5.2472 -4.0755 1.6183 11 8 5.6380 -4.7567 0.6933 12 6 5.5010 -4.5098 3.0257 13 8 5.1097 -3.8288 3.9508 14 7 6.1653 -5.6573 3.2674 15 6 6.4146 -6.0828 4.6469 16 6 7.1801 -7.4074 4.6416 17 6 7.4410 -7.8515 6.0823 18 6 8.1956 -9.1560 6.0771 19 1 8.4628 -9.6215 5.1399 20 6 8.5458 -9.7546 7.2687 21 7 9.2039 -10.8932 7.2642 22 14 8.0844 -8.9490 8.8897 23 1 6.7504 -9.4369 9.3230 24 1 9.0964 -9.2945 9.9200 25 1 8.0394 -7.4750 8.7148 26 6 2.1982 -1.1972 0.0018 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.6582 2.1324 -0.0005 31 1 4.5165 2.8160 -1.0279 32 1 3.7446 3.2623 0.5127 33 1 5.2861 2.3723 0.5146 34 1 5.3517 -0.0001 0.0020 35 1 3.7430 -3.2610 -0.5159 36 1 5.2845 -2.3711 -0.5200 37 1 4.2706 -2.3834 2.1161 38 1 6.4784 -6.2015 2.5279 39 1 7.0048 -5.3236 5.1601 40 1 5.4641 -6.2149 5.1638 41 1 6.5895 -8.1664 4.1284 42 1 8.1307 -7.2757 4.1245 43 1 8.0318 -7.0925 6.5952 44 1 6.4907 -7.9832 6.5997 45 1 9.4500 -11.3145 8.1026 46 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597257038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:31 Heat of formation + Delta-G solvation = -94.638963 kcal Electronic energy + Delta-G solvation = -24694.123865 eV Core-core repulsion = 20967.674381 eV Total energy + Delta-G solvation = -3726.449484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78259 -40.63362 -39.61241 -37.27013 -36.40205 -35.15684 -34.41858 -33.33749 -33.09967 -29.47560 -28.59708 -27.67356 -27.61210 -25.62021 -23.75952 -22.28854 -21.86634 -21.66302 -21.29035 -19.60936 -18.86124 -18.01059 -17.32796 -17.28608 -16.78319 -16.73526 -16.41721 -16.12321 -16.05496 -15.16730 -15.07783 -14.94759 -14.77690 -14.70747 -14.01361 -13.97848 -13.84223 -13.82150 -13.77616 -13.58876 -13.34095 -12.95277 -12.74305 -12.71283 -12.69958 -12.45646 -11.95743 -11.93342 -11.90612 -11.78221 -11.60613 -11.33513 -10.80450 -10.75309 -10.41878 -10.28240 -9.68748 -9.49439 -8.28290 -6.32745 0.20536 0.28388 0.40603 1.34601 1.38524 1.40184 1.51920 2.08419 2.37564 2.53553 2.86784 3.07433 3.40765 3.52941 3.79172 3.89809 4.01766 4.17297 4.20104 4.28659 4.39654 4.47763 4.50339 4.55051 4.63813 4.68541 4.80917 4.80992 4.84794 4.86281 4.97646 5.01839 5.02930 5.06383 5.17321 5.22509 5.34322 5.46332 5.53850 5.55432 5.58152 5.65102 5.66923 5.86672 6.06018 6.28124 6.29102 6.65655 6.75600 6.87997 7.31972 8.88210 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.001763 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.365791 B =15875.862406 C =16000.243446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.162 3.838 9 N -0.685 5.685 10 C 0.514 3.486 11 O -0.540 6.540 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.688 5.688 15 C 0.124 3.876 16 C -0.105 4.105 17 C -0.011 4.011 18 C -0.533 4.533 19 H 0.034 0.966 20 C 0.002 3.998 21 N -0.951 5.951 22 Si 0.950 3.050 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.244 1.244 26 C -0.116 4.116 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.418 0.582 38 H 0.419 0.581 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.266 0.734 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 29.668 -17.628 38.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.092 4.092 5 C -0.171 4.171 6 C -0.135 4.135 7 C -0.109 4.109 8 C 0.041 3.959 9 N -0.337 5.337 10 C 0.294 3.706 11 O -0.417 6.417 12 C 0.284 3.716 13 O -0.424 6.424 14 N -0.340 5.340 15 C 0.001 3.999 16 C -0.143 4.143 17 C -0.049 4.049 18 C -0.571 4.571 19 H 0.053 0.947 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.167 1.167 26 C -0.135 4.135 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.255 0.745 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.096 29.535 -17.536 38.368 hybrid contribution 0.275 -0.511 0.722 0.926 sum -16.821 29.024 -16.814 37.523 Atomic orbital electron populations 1.20840 0.89614 1.03566 1.03114 1.20200 0.97353 0.92837 0.98807 1.21271 0.93706 0.98388 1.00426 1.20196 0.94216 0.95975 0.98809 1.20841 1.00031 0.93152 1.03113 1.21141 1.00389 0.91511 1.00443 1.19715 0.93973 0.93885 1.03318 1.20378 1.00457 0.93453 0.81662 1.45839 1.55182 1.22267 1.10452 1.19986 0.79429 0.82363 0.88803 1.90773 1.51057 1.54279 1.45591 1.20245 0.79538 0.82234 0.89564 1.90752 1.51380 1.54312 1.45988 1.45892 1.54817 1.22627 1.10664 1.21553 1.00651 0.96567 0.81122 1.21526 0.99701 0.94555 0.98491 1.19463 0.96300 0.94804 0.94329 1.21481 1.35762 1.06664 0.93215 0.94719 1.26031 0.94536 0.95233 1.03623 1.70073 1.41537 1.19337 1.28258 0.85656 0.78280 0.80517 0.78201 1.19193 1.21191 1.16722 1.21145 0.93320 0.98578 1.00438 0.90276 0.91161 0.90555 0.84359 0.90274 0.90553 0.91165 0.85207 0.89703 0.89703 0.74509 0.74404 0.90933 0.90869 0.91778 0.91803 0.95656 0.95766 0.92541 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.09 -1.13 5.88 -19.86 -0.12 -1.25 16 3 C -0.12 -1.40 9.36 22.27 0.21 -1.19 16 4 C -0.09 -1.13 5.88 -19.87 -0.12 -1.25 16 5 C -0.11 -0.92 10.01 71.23 0.71 -0.21 16 6 C -0.12 -1.59 9.36 22.27 0.21 -1.38 16 7 C -0.11 -1.55 5.25 -19.87 -0.10 -1.65 16 8 C 0.16 2.52 5.80 85.63 0.50 3.02 16 9 N -0.68 -12.91 5.54 -468.14 -2.59 -15.51 16 10 C 0.51 12.50 7.89 87.27 0.69 13.19 16 11 O -0.54 -15.19 16.48 -3.24 -0.05 -15.24 16 12 C 0.50 13.83 7.89 87.27 0.69 14.52 16 13 O -0.55 -17.09 16.48 -3.26 -0.05 -17.15 16 14 N -0.69 -18.79 5.55 -464.41 -2.58 -21.37 16 15 C 0.12 3.76 5.67 86.38 0.49 4.25 16 16 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 17 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 18 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 19 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 20 C 0.00 0.14 5.47 84.65 0.46 0.61 16 21 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 22 Si 0.95 43.93 27.47 68.60 1.88 45.81 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 26 C -0.12 -1.58 9.36 22.27 0.21 -1.38 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 29 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.47 8.09 -2.39 -0.02 0.46 16 33 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 34 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 37 H 0.42 7.48 7.94 -92.71 -0.74 6.74 16 38 H 0.42 10.55 7.94 -92.71 -0.74 9.82 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 44 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 45 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 46 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -70.32 391.51 1.44 -68.88 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.54 Total: 20.90 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.07 Total: -6.97 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -4.87 Total: -96.24 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.11 Total: -32.39 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -70.32 1.44 -68.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.758 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds