Wall clock time and date at job start Tue Mar 31 2020 12:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47050 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47371 * 150.00037 * 3 2 1 7 7 C 1.37882 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99640 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00307 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50165 * 59.93071 * 9 7 2 11 11 C 1.53043 * 109.52377 * 299.85166 * 9 7 2 12 12 C 1.53041 * 109.54163 * 178.66618 * 11 9 7 13 13 C 1.52758 * 109.37899 * 61.23851 * 12 11 9 14 14 N 1.46921 * 109.01370 * 305.59025 * 13 12 11 15 15 C 1.34777 * 120.63534 * 233.58237 * 14 13 12 16 16 O 1.21282 * 120.00346 * 179.71517 * 15 14 13 17 17 C 1.50699 * 119.99614 * 359.72117 * 15 14 13 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46997 * 180.02562 * 18 17 15 20 20 O 1.42905 * 109.46728 * 180.02562 * 19 18 17 21 21 C 1.35905 * 116.99842 * 179.97438 * 20 19 18 22 22 C 1.39144 * 120.47243 * 179.72401 * 21 20 19 23 23 C 1.38541 * 118.37109 * 179.71440 * 22 21 20 24 24 C 1.38257 * 119.22368 * 0.57543 * 23 22 21 25 25 N 1.31848 * 120.88455 * 359.68411 * 24 23 22 26 26 C 1.31843 * 121.78174 * 0.02562 * 25 24 23 27 27 C 1.46934 * 118.73770 * 53.30888 * 14 13 12 28 28 H 0.96998 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46207 * 298.69266 * 11 9 7 30 30 H 1.09007 * 109.45496 * 58.64851 * 11 9 7 31 31 H 1.08995 * 109.50127 * 181.31698 * 12 11 9 32 32 H 1.09005 * 109.49680 * 301.41953 * 12 11 9 33 33 H 1.09002 * 109.51066 * 185.70881 * 13 12 11 34 34 H 1.09001 * 109.42896 * 65.42957 * 13 12 11 35 35 H 1.09000 * 109.47247 * 59.99885 * 17 15 14 36 36 H 1.08996 * 109.47258 * 300.00046 * 17 15 14 37 37 H 1.09000 * 109.46866 * 59.99931 * 18 17 15 38 38 H 1.09001 * 109.46611 * 300.00048 * 18 17 15 39 39 H 1.09000 * 109.47486 * 60.00167 * 19 18 17 40 40 H 1.09001 * 109.47362 * 299.99445 * 19 18 17 41 41 H 1.08000 * 120.81320 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.38751 * 180.26064 * 23 22 21 43 43 H 1.07997 * 119.55825 * 179.70392 * 24 23 22 44 44 H 1.08003 * 119.65742 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.58169 * 66.43254 * 27 14 13 46 46 H 1.08992 * 109.58557 * 186.85521 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8750 -0.6799 0.8897 11 6 4.0235 -0.4753 -1.2503 12 6 5.5535 -0.4459 -1.2335 13 6 6.0881 -1.8768 -1.2450 14 7 5.4863 -2.6216 -0.1307 15 6 6.2619 -3.2726 0.7587 16 8 5.7532 -3.8796 1.6772 17 6 7.7615 -3.2462 0.6118 18 6 8.3991 -4.0559 1.7428 19 6 9.9216 -4.0285 1.5940 20 8 10.5170 -4.7853 2.6499 21 6 11.8737 -4.8628 2.6644 22 6 12.5292 -5.5762 3.6631 23 6 13.9132 -5.6317 3.6324 24 6 14.5930 -4.9717 2.6255 25 7 13.9415 -4.2998 1.6968 26 6 12.6251 -4.2272 1.6869 27 6 4.0228 -2.6381 -0.0007 28 1 -0.4849 0.8401 0.0004 29 1 3.6801 -1.0041 -2.1395 30 1 3.6408 0.5453 -1.2647 31 1 5.9169 0.0866 -2.1124 32 1 5.8978 0.0612 -0.3321 33 1 7.1720 -1.8614 -1.1309 34 1 5.8247 -2.3548 -2.1885 35 1 8.1133 -2.2157 0.6603 36 1 8.0403 -3.6804 -0.3482 37 1 8.0474 -5.0865 1.6947 38 1 8.1203 -3.6212 2.7027 39 1 10.2730 -2.9979 1.6423 40 1 10.2008 -4.4630 0.6341 41 1 11.9725 -6.0779 4.4408 42 1 14.4549 -6.1797 4.3891 43 1 15.6720 -5.0074 2.5991 44 1 12.1266 -3.6667 0.9098 45 1 3.5876 -3.1795 -0.8407 46 1 3.7445 -3.1248 0.9339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:52 Heat of formation + Delta-G solvation = -44.979245 kcal Electronic energy + Delta-G solvation = -25780.347405 eV Core-core repulsion = 22056.051328 eV Total energy + Delta-G solvation = -3724.296077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.97165 -39.92062 -38.58655 -37.18722 -34.20513 -33.51437 -32.65249 -31.81526 -30.80931 -30.49238 -27.88015 -25.20870 -25.02113 -24.07409 -23.31620 -21.87128 -21.73241 -19.94862 -18.81939 -18.33365 -17.35470 -17.00000 -16.83001 -16.77315 -16.56441 -15.48436 -15.40188 -14.85999 -14.75077 -14.23924 -14.17060 -13.84697 -13.59935 -13.45712 -13.32513 -13.04778 -12.71571 -12.57838 -12.55899 -12.36041 -12.28541 -11.80735 -11.65402 -11.35901 -11.19321 -10.98479 -10.72224 -10.37261 -10.19569 -10.12858 -9.88431 -9.85362 -9.65325 -9.35759 -9.05456 -8.85441 -8.60197 -8.15094 -6.12921 -4.13168 0.69641 0.88415 2.61352 2.86254 3.20458 3.32687 3.34806 3.38042 3.39544 4.07572 4.24483 4.35011 4.39619 4.50576 4.56145 4.62386 4.72444 4.84219 4.98808 5.02881 5.06450 5.11372 5.14973 5.17689 5.28280 5.35796 5.49627 5.55602 5.67816 5.81005 5.81812 5.92397 5.99822 6.01083 6.12669 6.15316 6.31111 6.48006 6.62873 6.68369 6.80064 6.85736 7.09129 7.41398 7.53986 7.68494 7.78133 8.41786 8.47210 8.90334 9.48425 11.00027 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.002092 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.624717 B =13382.665179 C =13695.758040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.030 0.970 11 C -0.123 4.123 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.608 5.608 15 C 0.510 3.490 16 O -0.545 6.545 17 C -0.137 4.137 18 C -0.103 4.103 19 C 0.056 3.944 20 O -0.305 6.305 21 C 0.085 3.915 22 C -0.112 4.112 23 C -0.132 4.132 24 C 0.055 3.945 25 N -0.451 5.451 26 C 0.014 3.986 27 C 0.127 3.873 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.063 0.937 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.405 -7.798 1.051 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.179 4.179 13 C -0.013 4.013 14 N -0.341 5.341 15 C 0.298 3.702 16 O -0.423 6.423 17 C -0.177 4.177 18 C -0.141 4.141 19 C -0.018 4.018 20 O -0.217 6.217 21 C 0.037 3.963 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.103 4.103 25 N -0.160 5.160 26 C -0.144 4.144 27 C 0.006 3.994 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.081 0.919 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 27.247 -7.674 1.010 28.325 hybrid contribution -0.098 0.842 0.288 0.895 sum 27.149 -6.831 1.298 28.025 Atomic orbital electron populations 1.69890 1.06257 1.27015 1.50381 1.24991 0.94698 0.99018 0.94364 0.86822 0.79928 0.83574 0.77758 1.20584 1.22485 1.19148 1.20901 0.88282 0.94737 1.51408 0.90587 1.19466 0.96903 0.91460 0.93619 0.95225 1.21992 0.91947 1.00783 1.01297 1.21939 0.98816 0.95495 1.01607 1.21612 0.97155 0.92722 0.89765 1.48348 1.08473 1.50031 1.27220 1.20363 0.88822 0.79149 0.81907 1.90699 1.75489 1.43741 1.32371 1.21552 0.93379 1.02423 1.00368 1.21237 0.90330 1.02649 0.99892 1.22969 0.94489 0.95248 0.89139 1.86109 1.16036 1.69406 1.50190 1.20114 0.83921 0.96440 0.95845 1.21011 0.94253 1.00012 0.98529 1.22042 0.93724 0.99612 0.99760 1.22675 1.00612 0.95593 0.91429 1.67530 1.08868 1.15432 1.24198 1.22972 0.90419 1.01710 0.99256 1.21783 0.75695 0.99436 1.02483 0.92571 0.91894 0.93183 0.91638 0.92137 0.90627 0.91387 0.88729 0.88781 0.89808 0.89773 0.91529 0.91556 0.83891 0.84048 0.82542 0.82425 0.91910 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 3 Si 0.89 21.51 24.39 -169.99 -4.15 17.37 16 4 H -0.28 -6.48 6.86 56.52 0.39 -6.10 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 7 C -0.52 -14.10 9.14 -34.44 -0.31 -14.41 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.01 0.11 1.84 -91.65 -0.17 -0.05 16 10 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 11 C -0.12 -2.42 4.66 -26.69 -0.12 -2.55 16 12 C -0.14 -2.09 6.07 -26.83 -0.16 -2.25 16 13 C 0.11 1.40 6.31 -3.94 -0.02 1.38 16 14 N -0.61 -9.88 2.98 -173.04 -0.52 -10.40 16 15 C 0.51 7.99 7.70 -10.99 -0.08 7.90 16 16 O -0.54 -10.76 15.40 5.56 0.09 -10.67 16 17 C -0.14 -1.37 4.05 -27.88 -0.11 -1.48 16 18 C -0.10 -1.05 4.87 -26.73 -0.13 -1.18 16 19 C 0.06 0.45 4.75 37.16 0.18 0.63 16 20 O -0.31 -3.09 10.15 -19.44 -0.20 -3.29 16 21 C 0.08 0.80 6.71 -39.07 -0.26 0.54 16 22 C -0.11 -0.89 10.13 -39.13 -0.40 -1.29 16 23 C -0.13 -0.85 10.11 -39.46 -0.40 -1.25 16 24 C 0.05 0.41 11.18 -17.54 -0.20 0.22 16 25 N -0.45 -4.46 10.36 -13.12 -0.14 -4.60 16 26 C 0.01 0.13 10.22 -17.37 -0.18 -0.04 16 27 C 0.13 2.55 5.66 -3.71 -0.02 2.53 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.07 3.27 -51.92 -0.17 0.90 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.78 7.68 -51.93 -0.40 0.38 16 36 H 0.09 0.71 7.95 -51.93 -0.41 0.29 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.07 0.44 7.68 -51.93 -0.40 0.04 16 40 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.16 1.14 6.32 -52.48 -0.33 0.80 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 1.90 7.00 -51.93 -0.36 1.54 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -33.92 364.66 -8.12 -42.04 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.98 Total: -0.25 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.50 Total: -9.40 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.12 Total: -41.30 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.11 Total: -13.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.15 Total: 17.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.92 -8.12 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.940 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds