Wall clock time and date at job start Tue Mar 31 2020 12:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47050 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47371 * 150.00037 * 3 2 1 7 7 C 1.37882 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99640 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00307 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50165 * 59.93071 * 9 7 2 11 11 C 1.53043 * 109.52377 * 299.85166 * 9 7 2 12 12 C 1.53041 * 109.54163 * 178.66618 * 11 9 7 13 13 C 1.52758 * 109.37899 * 61.23851 * 12 11 9 14 14 N 1.46921 * 109.01370 * 305.59025 * 13 12 11 15 15 C 1.34777 * 120.63534 * 233.58237 * 14 13 12 16 16 O 1.21282 * 120.00346 * 179.71517 * 15 14 13 17 17 C 1.50699 * 119.99614 * 359.72117 * 15 14 13 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46997 * 180.02562 * 18 17 15 20 20 O 1.42905 * 109.46728 * 180.02562 * 19 18 17 21 21 C 1.35905 * 116.99842 * 179.97438 * 20 19 18 22 22 C 1.39144 * 120.47243 * 179.72401 * 21 20 19 23 23 C 1.38541 * 118.37109 * 179.71440 * 22 21 20 24 24 C 1.38257 * 119.22368 * 0.57543 * 23 22 21 25 25 N 1.31848 * 120.88455 * 359.68411 * 24 23 22 26 26 C 1.31843 * 121.78174 * 0.02562 * 25 24 23 27 27 C 1.46934 * 118.73770 * 53.30888 * 14 13 12 28 28 H 0.96998 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46207 * 298.69266 * 11 9 7 30 30 H 1.09007 * 109.45496 * 58.64851 * 11 9 7 31 31 H 1.08995 * 109.50127 * 181.31698 * 12 11 9 32 32 H 1.09005 * 109.49680 * 301.41953 * 12 11 9 33 33 H 1.09002 * 109.51066 * 185.70881 * 13 12 11 34 34 H 1.09001 * 109.42896 * 65.42957 * 13 12 11 35 35 H 1.09000 * 109.47247 * 59.99885 * 17 15 14 36 36 H 1.08996 * 109.47258 * 300.00046 * 17 15 14 37 37 H 1.09000 * 109.46866 * 59.99931 * 18 17 15 38 38 H 1.09001 * 109.46611 * 300.00048 * 18 17 15 39 39 H 1.09000 * 109.47486 * 60.00167 * 19 18 17 40 40 H 1.09001 * 109.47362 * 299.99445 * 19 18 17 41 41 H 1.08000 * 120.81320 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.38751 * 180.26064 * 23 22 21 43 43 H 1.07997 * 119.55825 * 179.70392 * 24 23 22 44 44 H 1.08003 * 119.65742 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.58169 * 66.43254 * 27 14 13 46 46 H 1.08992 * 109.58557 * 186.85521 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8750 -0.6799 0.8897 11 6 4.0235 -0.4753 -1.2503 12 6 5.5535 -0.4459 -1.2335 13 6 6.0881 -1.8768 -1.2450 14 7 5.4863 -2.6216 -0.1307 15 6 6.2619 -3.2726 0.7587 16 8 5.7532 -3.8796 1.6772 17 6 7.7615 -3.2462 0.6118 18 6 8.3991 -4.0559 1.7428 19 6 9.9216 -4.0285 1.5940 20 8 10.5170 -4.7853 2.6499 21 6 11.8737 -4.8628 2.6644 22 6 12.5292 -5.5762 3.6631 23 6 13.9132 -5.6317 3.6324 24 6 14.5930 -4.9717 2.6255 25 7 13.9415 -4.2998 1.6968 26 6 12.6251 -4.2272 1.6869 27 6 4.0228 -2.6381 -0.0007 28 1 -0.4849 0.8401 0.0004 29 1 3.6801 -1.0041 -2.1395 30 1 3.6408 0.5453 -1.2647 31 1 5.9169 0.0866 -2.1124 32 1 5.8978 0.0612 -0.3321 33 1 7.1720 -1.8614 -1.1309 34 1 5.8247 -2.3548 -2.1885 35 1 8.1133 -2.2157 0.6603 36 1 8.0403 -3.6804 -0.3482 37 1 8.0474 -5.0865 1.6947 38 1 8.1203 -3.6212 2.7027 39 1 10.2730 -2.9979 1.6423 40 1 10.2008 -4.4630 0.6341 41 1 11.9725 -6.0779 4.4408 42 1 14.4549 -6.1797 4.3891 43 1 15.6720 -5.0074 2.5991 44 1 12.1266 -3.6667 0.9098 45 1 3.5876 -3.1795 -0.8407 46 1 3.7445 -3.1248 0.9339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:50 Heat of formation + Delta-G solvation = -68.301453 kcal Electronic energy + Delta-G solvation = -25781.358732 eV Core-core repulsion = 22056.051328 eV Total energy + Delta-G solvation = -3725.307404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.56945 -41.16856 -39.23828 -38.58010 -35.41274 -34.92739 -33.52481 -33.21105 -32.23236 -31.19063 -28.83226 -26.90752 -26.24020 -24.78146 -23.98567 -23.19294 -22.65526 -21.40854 -19.90140 -19.20643 -18.82042 -18.22928 -17.60419 -17.48773 -17.42847 -16.75852 -16.63133 -16.34262 -15.41714 -15.35051 -15.17239 -15.07499 -14.88223 -14.57714 -14.27139 -14.16670 -13.99519 -13.88051 -13.65396 -13.35344 -13.05511 -12.97085 -12.83857 -12.52684 -12.37433 -12.28601 -12.08786 -11.88064 -11.68785 -11.50255 -11.27251 -11.09748 -10.69955 -10.67597 -10.67269 -10.43329 -9.53145 -9.44658 -8.33186 -6.38493 0.15583 0.30059 1.26694 1.34602 1.44827 1.67614 1.89637 2.28994 2.29895 2.83325 3.01652 3.49563 3.59132 3.70188 3.91432 3.92829 3.96476 4.05795 4.08670 4.09794 4.18599 4.30737 4.33748 4.37934 4.44031 4.52926 4.54818 4.59347 4.66066 4.74195 4.78736 4.92240 4.98169 5.01385 5.05249 5.12474 5.15961 5.16081 5.23563 5.39230 5.44532 5.60185 5.65239 5.74968 6.24268 6.26778 6.56275 6.68080 6.97667 7.23165 7.27618 8.83523 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.002092 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.624717 B =13382.665179 C =13695.758040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.303 1.303 6 H -0.251 1.251 7 C -0.524 4.524 8 H 0.031 0.969 9 C 0.008 3.992 10 H 0.013 0.987 11 C -0.123 4.123 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.611 5.611 15 C 0.501 3.499 16 O -0.599 6.599 17 C -0.123 4.123 18 C -0.099 4.099 19 C 0.059 3.941 20 O -0.327 6.327 21 C 0.068 3.932 22 C -0.126 4.126 23 C -0.124 4.124 24 C 0.047 3.953 25 N -0.479 5.479 26 C 0.005 3.995 27 C 0.137 3.863 28 H 0.266 0.734 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.060 0.940 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.180 -6.665 -0.502 32.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.231 1.231 6 H -0.175 1.175 7 C -0.562 4.562 8 H 0.049 0.951 9 C -0.011 4.011 10 H 0.031 0.969 11 C -0.161 4.161 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.343 5.343 15 C 0.291 3.709 16 O -0.480 6.480 17 C -0.162 4.162 18 C -0.137 4.137 19 C -0.016 4.016 20 O -0.240 6.240 21 C 0.020 3.980 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.111 4.111 25 N -0.189 5.189 26 C -0.153 4.153 27 C 0.014 3.986 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.169 0.831 42 H 0.191 0.809 43 H 0.199 0.801 44 H 0.191 0.809 45 H 0.078 0.922 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 32.067 -6.544 -0.578 32.733 hybrid contribution -1.635 0.340 0.849 1.874 sum 30.431 -6.204 0.271 31.058 Atomic orbital electron populations 1.70055 1.08293 1.28129 1.52377 1.25923 0.95497 1.03243 0.94014 0.85716 0.78770 0.78136 0.78980 1.18178 1.23069 1.17528 1.21248 0.91271 0.93101 1.50603 0.95077 1.19343 0.93583 0.93421 0.94798 0.96926 1.21870 0.96201 0.99036 0.98947 1.21935 0.94382 0.97538 1.03436 1.21994 0.99803 0.90793 0.88939 1.48414 1.06461 1.50753 1.28663 1.21489 0.91242 0.77637 0.80529 1.90682 1.76936 1.45868 1.34553 1.21585 0.88086 1.04614 1.01945 1.21129 0.92284 1.01313 0.99014 1.22996 0.92457 0.96440 0.89666 1.86068 1.16658 1.70096 1.51199 1.20294 0.83622 0.97396 0.96693 1.21343 0.95213 1.00024 0.98628 1.22379 0.93156 0.98887 0.99925 1.23192 1.01915 0.94913 0.91064 1.67556 1.09307 1.16593 1.25399 1.23205 0.90405 1.01975 0.99671 1.21272 0.79237 0.97415 1.00668 0.92487 0.91872 0.94619 0.87701 0.92284 0.85410 0.89724 0.85479 0.84820 0.91855 0.92331 0.89603 0.89276 0.83140 0.80931 0.80135 0.80878 0.92178 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.01 0.60 5.45 84.66 0.46 1.07 16 3 Si 0.96 44.73 24.39 68.60 1.67 46.40 16 4 H -0.26 -10.99 6.86 99.48 0.68 -10.30 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 7 C -0.52 -30.18 9.14 25.60 0.23 -29.94 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C 0.01 0.37 1.84 -11.46 -0.02 0.35 16 10 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 11 C -0.12 -4.60 4.66 30.62 0.14 -4.46 16 12 C -0.13 -3.36 6.07 30.53 0.19 -3.18 16 13 C 0.11 2.14 6.31 86.22 0.54 2.68 16 14 N -0.61 -18.71 2.98 -819.75 -2.44 -21.15 16 15 C 0.50 14.96 7.70 87.66 0.67 15.64 16 16 O -0.60 -24.39 15.40 -3.04 -0.05 -24.44 16 17 C -0.12 -1.96 4.05 29.85 0.12 -1.84 16 18 C -0.10 -1.86 4.87 30.60 0.15 -1.71 16 19 C 0.06 0.78 4.75 71.98 0.34 1.12 16 20 O -0.33 -6.23 10.15 -92.49 -0.94 -7.17 16 21 C 0.07 1.18 6.71 22.60 0.15 1.33 16 22 C -0.13 -1.83 10.13 22.56 0.23 -1.60 16 23 C -0.12 -1.31 10.11 22.35 0.23 -1.09 16 24 C 0.05 0.60 11.18 84.69 0.95 1.54 16 25 N -0.48 -8.52 10.36 -195.43 -2.02 -10.54 16 26 C 0.00 0.08 10.22 84.80 0.87 0.94 16 27 C 0.14 5.67 5.66 86.36 0.49 6.16 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.43 3.27 -2.38 -0.01 1.43 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.13 1.34 5.93 -2.39 -0.01 1.32 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.13 1.31 7.68 -2.39 -0.02 1.29 16 36 H 0.13 1.18 7.95 -2.39 -0.02 1.16 16 37 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 39 H 0.09 0.81 7.68 -2.39 -0.02 0.79 16 40 H 0.09 0.78 7.68 -2.39 -0.02 0.76 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.17 1.99 6.32 -2.91 -0.02 1.98 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 Total: -1.00 -82.10 364.66 3.15 -78.95 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.89 Total: 10.42 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.74 Total: -12.98 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -4.17 Total: -91.18 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.99 Total: -31.61 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.40 kcal Total: -82.10 3.15 -78.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.644 kcal (2) G-P(sol) polarization free energy of solvation -82.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds