Wall clock time and date at job start Tue Mar 31 2020 11:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46767 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47240 * 30.00149 * 3 2 1 6 6 H 1.48500 * 109.46974 * 150.00095 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99936 * 89.99796 * 10 9 7 12 12 C 1.50703 * 109.46877 * 90.00092 * 11 10 9 13 13 C 1.38669 * 120.41762 * 269.72204 * 12 11 10 14 14 C 1.38631 * 118.41927 * 179.78495 * 13 12 11 15 15 C 1.38237 * 119.15923 * 0.51175 * 14 13 12 16 16 N 1.31857 * 120.76049 * 359.72419 * 15 14 13 17 17 C 1.31878 * 121.72700 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00036 * 270.27831 * 10 9 7 19 19 O 1.21281 * 120.00220 * 179.72597 * 18 10 9 20 20 C 1.50706 * 120.00080 * 359.72107 * 18 10 9 21 21 C 1.52992 * 109.47274 * 180.02562 * 20 18 10 22 22 C 1.52996 * 109.47231 * 180.02562 * 21 20 18 23 23 O 1.42908 * 112.84830 * 53.79898 * 22 21 20 24 24 C 1.53778 * 113.61734 * 282.49837 * 22 21 20 25 25 C 1.53782 * 87.08224 * 220.01776 * 24 22 21 26 26 C 1.53780 * 113.61603 * 184.99593 * 22 21 20 27 27 H 0.96995 * 119.99689 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47398 * 60.00031 * 9 7 2 29 29 H 1.09005 * 109.46700 * 299.99953 * 9 7 2 30 30 H 1.09000 * 109.46803 * 209.99571 * 11 10 9 31 31 H 1.09000 * 109.47214 * 330.00364 * 11 10 9 32 32 H 1.07992 * 120.79277 * 0.02562 * 13 12 11 33 33 H 1.08001 * 120.42209 * 180.21604 * 14 13 12 34 34 H 1.07990 * 119.61497 * 179.75168 * 15 14 13 35 35 H 1.08000 * 119.61656 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.46762 * 300.00389 * 20 18 10 37 37 H 1.08998 * 109.46924 * 59.99727 * 20 18 10 38 38 H 1.09004 * 109.47116 * 299.99649 * 21 20 18 39 39 H 1.08993 * 109.47352 * 59.99893 * 21 20 18 40 40 H 0.96692 * 113.99986 * 309.67215 * 23 22 21 41 41 H 1.09011 * 113.60932 * 334.56298 * 24 22 21 42 42 H 1.08998 * 113.62044 * 105.46177 * 24 22 21 43 43 H 1.08994 * 113.61275 * 270.88038 * 25 24 22 44 44 H 1.09002 * 113.61536 * 139.97652 * 25 24 22 45 45 H 1.08997 * 113.61634 * 254.52975 * 26 22 21 46 46 H 1.08997 * 113.61318 * 25.43429 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6792 -4.1694 1.2683 12 6 1.7624 -5.2836 1.7033 13 6 0.6656 -5.0164 2.5086 14 6 -0.1527 -6.0718 2.8804 15 6 0.1559 -7.3481 2.4480 16 7 1.2103 -7.5657 1.6868 17 6 2.0077 -6.5853 1.3098 18 6 2.6453 -4.1212 -1.1677 19 8 3.4373 -5.0397 -1.1677 20 6 2.1557 -3.5485 -2.4729 21 6 2.8066 -4.3000 -3.6357 22 6 2.3099 -3.7181 -4.9607 23 8 2.4949 -2.3039 -5.0497 24 6 0.8950 -4.1815 -5.3452 25 6 1.4073 -4.2862 -6.7914 26 6 2.8115 -4.4840 -6.1963 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5570 0.8897 30 1 3.6886 -4.5594 1.1378 31 1 2.6869 -3.3877 2.0279 32 1 0.4517 -4.0095 2.8351 33 1 -1.0175 -5.8999 3.5040 34 1 -0.4742 -8.1762 2.7366 35 1 2.8624 -6.8023 0.6862 36 1 1.0725 -3.6549 -2.5327 37 1 2.4205 -2.4926 -2.5284 38 1 3.8898 -4.1938 -3.5760 39 1 2.5413 -5.3557 -3.5800 40 1 2.1603 -1.8146 -4.2858 41 1 0.6166 -5.1415 -4.9101 42 1 0.1318 -3.4157 -5.2066 43 1 1.3003 -3.3628 -7.3604 44 1 1.0324 -5.1594 -7.3253 45 1 3.5956 -3.9622 -6.7449 46 1 3.0571 -5.5264 -5.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601018555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:12 Heat of formation + Delta-G solvation = -41.657936 kcal Electronic energy + Delta-G solvation = -27152.110292 eV Core-core repulsion = 23427.958237 eV Total energy + Delta-G solvation = -3724.152055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14538 -39.70569 -38.73622 -35.33466 -34.47765 -33.21720 -32.29223 -32.01399 -31.21176 -27.65181 -26.81753 -25.72141 -24.97573 -23.44996 -22.89021 -22.26432 -21.24268 -19.50727 -18.38474 -17.00338 -16.98486 -16.53850 -16.10911 -15.71198 -15.60989 -15.27967 -15.00800 -14.85101 -14.64203 -14.21480 -13.77558 -13.43865 -13.34997 -12.86514 -12.81907 -12.64842 -12.42579 -12.36534 -11.86588 -11.69978 -11.68084 -11.36568 -11.32186 -11.03585 -10.97138 -10.85964 -10.79905 -10.62768 -10.27910 -9.98527 -9.90860 -9.61204 -9.45362 -9.29242 -9.19289 -8.77288 -8.62540 -7.86935 -6.28696 -4.37131 1.28530 1.49539 3.16717 3.24843 3.25971 3.33034 3.74105 4.16651 4.19899 4.25893 4.63491 4.64746 4.74556 4.89673 4.97643 5.02335 5.04478 5.14719 5.20738 5.29048 5.35578 5.49960 5.55134 5.59376 5.73989 5.76697 5.81389 5.89999 5.94210 6.01198 6.04556 6.09398 6.14459 6.22182 6.31523 6.37490 6.49420 6.51178 6.56053 6.64380 6.92183 7.06148 7.39310 7.65784 7.86378 7.93827 8.16185 8.20727 8.68469 8.90725 9.32039 10.77633 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.005472 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.245236 B = 5115.713012 C = 7967.675730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.239 3.761 10 N -0.592 5.592 11 C 0.160 3.840 12 C -0.144 4.144 13 C -0.059 4.059 14 C -0.178 4.178 15 C 0.088 3.912 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.520 3.480 19 O -0.572 6.572 20 C -0.138 4.138 21 C -0.117 4.117 22 C 0.110 3.890 23 O -0.547 6.547 24 C -0.168 4.168 25 C -0.135 4.135 26 C -0.127 4.127 27 H 0.266 0.734 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -8.411 -2.477 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.119 3.881 10 N -0.321 5.321 11 C 0.036 3.964 12 C -0.147 4.147 13 C -0.086 4.086 14 C -0.198 4.198 15 C -0.069 4.069 16 N -0.201 5.201 17 C -0.041 4.041 18 C 0.309 3.691 19 O -0.454 6.454 20 C -0.177 4.177 21 C -0.156 4.156 22 C 0.069 3.931 23 O -0.355 6.355 24 C -0.205 4.205 25 C -0.173 4.173 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.233 -9.743 -3.302 10.290 hybrid contribution -0.333 2.214 0.995 2.450 sum -0.101 -7.530 -2.308 7.876 Atomic orbital electron populations 1.69917 1.06013 1.27444 1.49372 1.24932 0.94822 0.99277 0.94587 0.86530 0.79840 0.82883 0.78480 1.20301 1.21098 1.19789 1.21485 0.93647 0.90349 1.52489 0.91982 1.19442 0.87474 0.82518 0.98675 1.48254 1.45525 1.34622 1.03746 1.20121 0.95935 0.93202 0.87154 1.21444 0.98099 0.96870 0.98328 1.21637 0.92716 0.99770 0.94477 1.22107 1.01107 0.94088 1.02524 1.22700 0.94114 0.96061 0.94046 1.67706 1.04669 1.36223 1.11474 1.22842 0.97609 0.88060 0.95620 1.20465 0.80608 0.82172 0.85831 1.90576 1.36118 1.30674 1.88000 1.21577 1.01811 1.02289 0.92030 1.21859 1.01521 1.00076 0.92100 1.22189 0.94874 0.81829 0.94253 1.86396 1.84500 1.16745 1.47833 1.23635 0.97818 1.02167 0.96914 1.22744 0.96383 1.01719 0.96413 1.23010 0.97674 0.99902 0.95884 0.92430 0.94385 0.94779 0.89710 0.89281 0.84555 0.85092 0.83305 0.82448 0.89338 0.87918 0.90726 0.90600 0.76527 0.89542 0.90903 0.90034 0.91745 0.90855 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.01 9.26 -34.44 -0.32 -13.33 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 5.20 4.96 -5.19 -0.03 5.18 16 10 N -0.59 -11.47 2.44 -176.43 -0.43 -11.90 16 11 C 0.16 2.76 5.56 -5.19 -0.03 2.73 16 12 C -0.14 -2.34 5.48 -104.48 -0.57 -2.91 16 13 C -0.06 -0.88 9.86 -39.28 -0.39 -1.27 16 14 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 15 C 0.09 1.19 11.18 -17.54 -0.20 0.99 16 16 N -0.49 -7.95 10.36 -13.25 -0.14 -8.09 16 17 C 0.12 1.92 10.86 -17.55 -0.19 1.73 16 18 C 0.52 10.01 7.67 -10.98 -0.08 9.93 16 19 O -0.57 -11.76 15.15 5.56 0.08 -11.68 16 20 C -0.14 -2.30 3.82 -27.88 -0.11 -2.40 16 21 C -0.12 -1.76 4.14 -26.74 -0.11 -1.87 16 22 C 0.11 1.50 1.38 -89.81 -0.12 1.38 16 23 O -0.55 -8.26 13.39 -35.23 -0.47 -8.73 16 24 C -0.17 -2.08 7.32 -25.92 -0.19 -2.27 16 25 C -0.14 -1.54 8.02 -25.92 -0.21 -1.75 16 26 C -0.13 -1.54 7.47 -25.92 -0.19 -1.73 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 28 H 0.04 0.86 6.45 -51.93 -0.34 0.53 16 29 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.08 1.45 7.36 -51.93 -0.38 1.07 16 31 H 0.09 1.49 8.02 -51.93 -0.42 1.08 16 32 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.16 2.66 7.64 -52.49 -0.40 2.26 16 36 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 37 H 0.10 1.78 6.59 -51.93 -0.34 1.44 16 38 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 40 H 0.38 5.33 7.18 45.56 0.33 5.66 16 41 H 0.09 1.02 8.04 -51.92 -0.42 0.60 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -28.24 381.79 -9.25 -37.49 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.53 Total: 11.70 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.23 Total: -6.74 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.17 Total: -42.35 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.39 Total: -20.41 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.24 -9.25 -37.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.173 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds