Wall clock time and date at job start Tue Mar 31 2020 11:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46767 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47240 * 30.00149 * 3 2 1 6 6 H 1.48500 * 109.46974 * 150.00095 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99936 * 89.99796 * 10 9 7 12 12 C 1.50703 * 109.46877 * 90.00092 * 11 10 9 13 13 C 1.38669 * 120.41762 * 269.72204 * 12 11 10 14 14 C 1.38631 * 118.41927 * 179.78495 * 13 12 11 15 15 C 1.38237 * 119.15923 * 0.51175 * 14 13 12 16 16 N 1.31857 * 120.76049 * 359.72419 * 15 14 13 17 17 C 1.31878 * 121.72700 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00036 * 270.27831 * 10 9 7 19 19 O 1.21281 * 120.00220 * 179.72597 * 18 10 9 20 20 C 1.50706 * 120.00080 * 359.72107 * 18 10 9 21 21 C 1.52992 * 109.47274 * 180.02562 * 20 18 10 22 22 C 1.52996 * 109.47231 * 180.02562 * 21 20 18 23 23 O 1.42908 * 112.84830 * 53.79898 * 22 21 20 24 24 C 1.53778 * 113.61734 * 282.49837 * 22 21 20 25 25 C 1.53782 * 87.08224 * 220.01776 * 24 22 21 26 26 C 1.53780 * 113.61603 * 184.99593 * 22 21 20 27 27 H 0.96995 * 119.99689 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47398 * 60.00031 * 9 7 2 29 29 H 1.09005 * 109.46700 * 299.99953 * 9 7 2 30 30 H 1.09000 * 109.46803 * 209.99571 * 11 10 9 31 31 H 1.09000 * 109.47214 * 330.00364 * 11 10 9 32 32 H 1.07992 * 120.79277 * 0.02562 * 13 12 11 33 33 H 1.08001 * 120.42209 * 180.21604 * 14 13 12 34 34 H 1.07990 * 119.61497 * 179.75168 * 15 14 13 35 35 H 1.08000 * 119.61656 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.46762 * 300.00389 * 20 18 10 37 37 H 1.08998 * 109.46924 * 59.99727 * 20 18 10 38 38 H 1.09004 * 109.47116 * 299.99649 * 21 20 18 39 39 H 1.08993 * 109.47352 * 59.99893 * 21 20 18 40 40 H 0.96692 * 113.99986 * 309.67215 * 23 22 21 41 41 H 1.09011 * 113.60932 * 334.56298 * 24 22 21 42 42 H 1.08998 * 113.62044 * 105.46177 * 24 22 21 43 43 H 1.08994 * 113.61275 * 270.88038 * 25 24 22 44 44 H 1.09002 * 113.61536 * 139.97652 * 25 24 22 45 45 H 1.08997 * 113.61634 * 254.52975 * 26 22 21 46 46 H 1.08997 * 113.61318 * 25.43429 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6792 -4.1694 1.2683 12 6 1.7624 -5.2836 1.7033 13 6 0.6656 -5.0164 2.5086 14 6 -0.1527 -6.0718 2.8804 15 6 0.1559 -7.3481 2.4480 16 7 1.2103 -7.5657 1.6868 17 6 2.0077 -6.5853 1.3098 18 6 2.6453 -4.1212 -1.1677 19 8 3.4373 -5.0397 -1.1677 20 6 2.1557 -3.5485 -2.4729 21 6 2.8066 -4.3000 -3.6357 22 6 2.3099 -3.7181 -4.9607 23 8 2.4949 -2.3039 -5.0497 24 6 0.8950 -4.1815 -5.3452 25 6 1.4073 -4.2862 -6.7914 26 6 2.8115 -4.4840 -6.1963 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5570 0.8897 30 1 3.6886 -4.5594 1.1378 31 1 2.6869 -3.3877 2.0279 32 1 0.4517 -4.0095 2.8351 33 1 -1.0175 -5.8999 3.5040 34 1 -0.4742 -8.1762 2.7366 35 1 2.8624 -6.8023 0.6862 36 1 1.0725 -3.6549 -2.5327 37 1 2.4205 -2.4926 -2.5284 38 1 3.8898 -4.1938 -3.5760 39 1 2.5413 -5.3557 -3.5800 40 1 2.1603 -1.8146 -4.2858 41 1 0.6166 -5.1415 -4.9101 42 1 0.1318 -3.4157 -5.2066 43 1 1.3003 -3.3628 -7.3604 44 1 1.0324 -5.1594 -7.3253 45 1 3.5956 -3.9622 -6.7449 46 1 3.0571 -5.5264 -5.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601018555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:10 Heat of formation + Delta-G solvation = -57.363379 kcal Electronic energy + Delta-G solvation = -27152.791331 eV Core-core repulsion = 23427.958237 eV Total energy + Delta-G solvation = -3724.833094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.44126 -40.84271 -40.08997 -36.92136 -35.58640 -34.87398 -33.81795 -33.23649 -32.45858 -29.32864 -28.20590 -26.76345 -26.20779 -24.95012 -24.33893 -23.43012 -22.44617 -20.55501 -19.91824 -18.69820 -18.32548 -17.89926 -17.28821 -17.15944 -16.91353 -16.73115 -16.39492 -16.08149 -15.84248 -15.60507 -15.02284 -14.68137 -14.46551 -14.31258 -14.21878 -13.96849 -13.92872 -13.52373 -13.38168 -13.13875 -12.94709 -12.85710 -12.75087 -12.53056 -12.46767 -12.09301 -12.00724 -11.97771 -11.72807 -11.70949 -11.07862 -10.90113 -10.68831 -10.58965 -10.50803 -10.44233 -9.95392 -9.49026 -8.19682 -6.33564 0.12441 0.32638 1.42473 1.46576 1.53576 1.75968 2.28945 2.44994 2.94612 3.11513 3.14382 3.52660 3.57269 3.64210 3.73631 3.89026 3.90196 3.92458 4.07140 4.10301 4.17147 4.23870 4.30360 4.47104 4.65209 4.65890 4.68909 4.77682 4.81051 4.84162 4.87066 4.89124 4.96450 5.05142 5.08994 5.17187 5.23774 5.25686 5.36163 5.39420 5.47023 5.65996 5.77715 5.81303 6.06350 6.55162 6.74237 6.81554 7.00399 7.29665 7.41787 8.85424 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.005472 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.245236 B = 5115.713012 C = 7967.675730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.030 3.970 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.255 3.745 10 N -0.593 5.593 11 C 0.161 3.839 12 C -0.155 4.155 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.088 3.912 16 N -0.512 5.512 17 C 0.103 3.897 18 C 0.513 3.487 19 O -0.587 6.587 20 C -0.130 4.130 21 C -0.105 4.105 22 C 0.100 3.900 23 O -0.560 6.560 24 C -0.166 4.166 25 C -0.127 4.127 26 C -0.126 4.126 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.386 0.614 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -8.986 -2.434 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.171 4.171 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.135 3.865 10 N -0.323 5.323 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.095 4.095 14 C -0.186 4.186 15 C -0.069 4.069 16 N -0.221 5.221 17 C -0.053 4.053 18 C 0.303 3.697 19 O -0.469 6.469 20 C -0.169 4.169 21 C -0.144 4.144 22 C 0.059 3.941 23 O -0.368 6.368 24 C -0.204 4.204 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.157 0.843 33 H 0.185 0.815 34 H 0.203 0.797 35 H 0.162 0.838 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.237 0.763 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.684 -10.324 -3.258 10.848 hybrid contribution -0.070 2.332 1.058 2.561 sum -0.754 -7.993 -2.201 8.324 Atomic orbital electron populations 1.69992 1.07035 1.28097 1.50333 1.25514 0.95406 1.01808 0.94397 0.85687 0.78615 0.79746 0.78424 1.19949 1.20954 1.19884 1.21635 0.93256 0.91439 1.51948 0.92936 1.19086 0.87347 0.82493 0.97596 1.48238 1.45155 1.34157 1.04743 1.20150 0.96155 0.93663 0.86322 1.21272 0.98777 0.96203 0.99544 1.21805 0.92643 1.00714 0.94378 1.22477 1.01321 0.93130 1.01707 1.23347 0.93349 0.97554 0.92631 1.67711 1.05659 1.36228 1.12502 1.22662 0.97903 0.88447 0.96306 1.20900 0.80357 0.81990 0.86494 1.90563 1.36767 1.31337 1.88265 1.21533 1.02080 1.01841 0.91483 1.21762 1.00396 0.99981 0.92227 1.22375 0.96305 0.81285 0.94118 1.86383 1.84751 1.17597 1.48067 1.23644 0.96666 1.02301 0.97806 1.22706 0.95545 1.02435 0.95771 1.23079 0.98104 1.00344 0.94775 0.92357 0.95220 0.95870 0.90101 0.89193 0.84256 0.81545 0.79698 0.83780 0.88909 0.88697 0.92152 0.90387 0.76321 0.88708 0.91446 0.90482 0.89660 0.91152 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.44 13.29 21.45 0.28 -47.15 16 2 C 0.03 1.47 5.46 84.65 0.46 1.93 16 3 Si 0.95 39.92 29.54 68.60 2.03 41.95 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -26.33 9.26 25.60 0.24 -26.10 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.26 11.27 4.96 85.63 0.42 11.70 16 10 N -0.59 -23.41 2.44 -830.48 -2.03 -25.44 16 11 C 0.16 5.67 5.56 85.63 0.48 6.14 16 12 C -0.15 -5.03 5.48 -19.77 -0.11 -5.14 16 13 C -0.07 -1.97 9.86 22.47 0.22 -1.75 16 14 C -0.17 -3.88 10.11 22.36 0.23 -3.66 16 15 C 0.09 2.16 11.18 84.69 0.95 3.11 16 16 N -0.51 -16.02 10.36 -195.84 -2.03 -18.05 16 17 C 0.10 3.45 10.86 84.67 0.92 4.37 16 18 C 0.51 20.09 7.67 87.66 0.67 20.76 16 19 O -0.59 -24.59 15.15 -3.03 -0.05 -24.64 16 20 C -0.13 -4.40 3.82 29.85 0.11 -4.28 16 21 C -0.11 -3.15 4.14 30.59 0.13 -3.03 16 22 C 0.10 2.68 1.38 -10.27 -0.01 2.67 16 23 O -0.56 -16.83 13.39 -148.98 -1.99 -18.82 16 24 C -0.17 -3.93 7.32 31.12 0.23 -3.70 16 25 C -0.13 -2.65 8.02 31.12 0.25 -2.40 16 26 C -0.13 -2.85 7.47 31.12 0.23 -2.62 16 27 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 28 H 0.03 1.36 6.45 -2.39 -0.02 1.35 16 29 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 30 H 0.08 2.87 7.36 -2.39 -0.02 2.86 16 31 H 0.09 3.09 8.02 -2.39 -0.02 3.07 16 32 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.19 3.08 8.06 -2.92 -0.02 3.06 16 35 H 0.14 5.07 7.64 -2.91 -0.02 5.04 16 36 H 0.09 3.05 7.32 -2.39 -0.02 3.03 16 37 H 0.09 3.37 6.59 -2.39 -0.02 3.35 16 38 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 39 H 0.08 2.29 8.01 -2.39 -0.02 2.27 16 40 H 0.39 10.88 7.18 -74.06 -0.53 10.34 16 41 H 0.09 2.07 8.04 -2.38 -0.02 2.05 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 Total: -1.00 -59.36 381.79 2.07 -57.29 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.44 Total: 36.86 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.42 Total: -2.00 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -3.77 Total: -90.63 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.04 Total: -43.46 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -59.36 2.07 -57.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.077 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds