Wall clock time and date at job start Tue Mar 31 2020 12:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38233 * 119.61676 * 94.72659 * 12 11 10 14 14 C 1.38628 * 119.15533 * 179.75445 * 13 12 11 15 15 C 1.38668 * 118.42368 * 0.51409 * 14 13 12 16 16 C 1.38178 * 119.16300 * 359.72792 * 15 14 13 17 17 N 1.31849 * 119.61920 * 275.00328 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 C 1.53001 * 109.46886 * 180.02562 * 21 20 18 23 23 O 1.42898 * 112.85457 * 53.79921 * 22 21 20 24 24 C 1.53785 * 113.61129 * 282.49141 * 22 21 20 25 25 C 1.53782 * 87.08416 * 220.01965 * 24 22 21 26 26 C 1.53781 * 113.61359 * 184.99815 * 22 21 20 27 27 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 29 29 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 30 30 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 31 31 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 32 32 H 1.07999 * 120.41697 * 359.97438 * 13 12 11 33 33 H 1.08006 * 120.78684 * 180.26196 * 14 13 12 34 34 H 1.08005 * 120.41758 * 179.70858 * 15 14 13 35 35 H 1.08004 * 119.61657 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 37 37 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 38 38 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 39 39 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 40 40 H 0.96707 * 113.99846 * 309.66943 * 23 22 21 41 41 H 1.09001 * 113.61633 * 334.57474 * 24 22 21 42 42 H 1.09000 * 113.61144 * 105.46830 * 24 22 21 43 43 H 1.09004 * 113.61448 * 270.88673 * 25 24 22 44 44 H 1.09002 * 113.61332 * 139.98082 * 25 24 22 45 45 H 1.08993 * 113.61692 * 254.52688 * 26 22 21 46 46 H 1.09002 * 113.61799 * 25.43079 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9522 -1.9985 2.5787 14 6 7.2643 -1.7924 2.9760 15 6 8.2471 -2.6273 2.4662 16 6 7.8880 -3.6334 1.5898 17 7 6.6285 -3.8034 1.2376 18 6 4.2239 -3.2110 -1.1682 19 8 4.6277 -4.3546 -1.1681 20 6 3.9718 -2.5011 -2.4733 21 6 4.3022 -3.4389 -3.6362 22 6 4.0468 -2.7179 -4.9612 23 8 4.7321 -1.4674 -5.0537 24 6 2.5590 -2.6368 -5.3415 25 6 2.9942 -2.9218 -6.7887 26 6 4.2327 -3.6150 -6.1964 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8912 30 1 3.5640 -2.8814 2.0276 31 1 4.0774 -4.3350 1.1377 32 1 5.1617 -1.3644 2.9520 33 1 7.5156 -0.9979 3.6630 34 1 9.2804 -2.4927 2.7504 35 1 8.6476 -4.2876 1.1880 36 1 4.6017 -1.6134 -2.5317 37 1 2.9237 -2.2072 -2.5305 38 1 5.3503 -3.7331 -3.5792 39 1 3.6721 -4.3263 -3.5776 40 1 4.6000 -0.8891 -4.2899 41 1 1.9525 -3.4297 -4.9037 42 1 2.1262 -1.6461 -5.2028 43 1 3.2279 -2.0230 -7.3594 44 1 2.3264 -3.6001 -7.3199 45 1 5.1510 -3.4139 -6.7479 46 1 4.0838 -4.6753 -5.9924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601036449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:59 Heat of formation + Delta-G solvation = -32.320876 kcal Electronic energy + Delta-G solvation = -27213.873219 eV Core-core repulsion = 23490.126049 eV Total energy + Delta-G solvation = -3723.747169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17929 -39.71554 -38.69378 -35.25747 -34.52131 -32.98238 -32.30566 -32.17818 -31.32931 -28.25843 -27.00251 -25.70980 -25.03601 -23.39691 -22.56244 -22.25498 -21.23747 -19.52184 -18.35655 -17.23831 -16.96122 -16.54830 -16.12510 -15.77102 -15.62031 -15.45692 -14.94012 -14.83351 -14.70406 -14.24165 -13.67621 -13.51755 -13.29107 -13.06806 -12.88113 -12.65446 -12.46893 -12.31195 -12.08363 -11.77090 -11.59251 -11.49584 -11.39116 -11.02840 -10.92954 -10.81166 -10.74632 -10.60223 -10.37324 -9.96532 -9.76375 -9.70963 -9.44810 -9.21771 -9.16836 -8.83003 -8.75490 -7.82397 -6.27995 -4.30126 1.20191 1.42275 3.10985 3.19085 3.21500 3.37805 3.65248 4.16025 4.17526 4.19920 4.52371 4.66574 4.76867 4.87752 4.92754 4.94663 4.99751 5.02388 5.16022 5.25598 5.35429 5.45322 5.56849 5.68166 5.70084 5.78385 5.83340 5.85849 5.92310 5.99029 6.00964 6.14145 6.17185 6.25438 6.26373 6.33437 6.36279 6.41739 6.49210 6.56288 6.60713 6.82666 7.26349 7.37457 7.77941 8.08068 8.23418 8.35966 8.77572 8.95145 9.31376 10.84418 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008658 B = 0.005222 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.161123 B = 5360.255320 C = 7613.705279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.589 5.589 11 C 0.167 3.833 12 C 0.120 3.880 13 C -0.160 4.160 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.093 3.907 17 N -0.458 5.458 18 C 0.521 3.479 19 O -0.549 6.549 20 C -0.140 4.140 21 C -0.116 4.116 22 C 0.108 3.892 23 O -0.547 6.547 24 C -0.166 4.166 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.267 0.733 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.379 0.621 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -2.448 -1.889 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.320 5.320 11 C 0.043 3.957 12 C -0.019 4.019 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.064 4.064 17 N -0.167 5.167 18 C 0.309 3.691 19 O -0.427 6.427 20 C -0.180 4.180 21 C -0.154 4.154 22 C 0.067 3.933 23 O -0.355 6.355 24 C -0.203 4.203 25 C -0.173 4.173 26 C -0.164 4.164 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.291 -3.834 -3.040 12.306 hybrid contribution 0.387 2.198 1.328 2.597 sum 11.678 -1.636 -1.712 11.916 Atomic orbital electron populations 1.69888 1.06199 1.27228 1.49241 1.24865 0.94686 0.98783 0.94245 0.86978 0.80433 0.84119 0.79024 1.19776 1.20852 1.18951 1.21375 0.88943 0.95046 1.52630 0.90214 1.19808 0.95847 0.78014 0.97468 1.47836 1.64328 1.15786 1.04013 1.20136 0.88694 0.99730 0.87135 1.21939 0.96653 0.91046 0.92276 1.22122 0.97635 0.98941 0.99324 1.21546 0.92886 0.98216 0.98058 1.22100 1.00314 0.97666 1.00108 1.22787 0.93427 0.95909 0.94310 1.67660 1.00386 1.26756 1.21876 1.20403 0.76687 0.86484 0.85485 1.90642 1.46513 1.18021 1.87569 1.21625 1.04974 0.99103 0.92314 1.21847 1.03128 0.98541 0.91926 1.22239 0.91775 0.84944 0.94344 1.86402 1.73271 1.28375 1.47417 1.23626 0.97006 1.03097 0.96596 1.22757 0.97418 1.00573 0.96584 1.23006 0.99035 0.98539 0.95772 0.92310 0.95075 0.95358 0.88562 0.88884 0.84561 0.85132 0.85278 0.83215 0.90048 0.87352 0.90989 0.90179 0.77139 0.89191 0.90763 0.90141 0.91657 0.90980 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -5.47 6.54 56.52 0.37 -5.11 16 7 C -0.54 -13.51 9.83 -34.44 -0.34 -13.85 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.21 4.41 4.03 -5.19 -0.02 4.39 16 10 N -0.59 -11.76 2.44 -176.43 -0.43 -12.19 16 11 C 0.17 3.06 5.71 -5.20 -0.03 3.03 16 12 C 0.12 2.03 6.36 -82.59 -0.53 1.51 16 13 C -0.16 -2.31 9.72 -39.44 -0.38 -2.70 16 14 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 15 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 16 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 17 N -0.46 -7.99 10.27 -9.47 -0.10 -8.09 16 18 C 0.52 10.49 7.67 -10.98 -0.08 10.40 16 19 O -0.55 -12.16 15.56 5.56 0.09 -12.07 16 20 C -0.14 -2.40 3.82 -27.88 -0.11 -2.51 16 21 C -0.12 -1.79 4.14 -26.73 -0.11 -1.91 16 22 C 0.11 1.50 1.38 -89.81 -0.12 1.38 16 23 O -0.55 -7.94 13.39 -35.23 -0.47 -8.41 16 24 C -0.17 -2.22 7.32 -25.92 -0.19 -2.41 16 25 C -0.14 -1.61 8.02 -25.91 -0.21 -1.82 16 26 C -0.13 -1.55 7.47 -25.91 -0.19 -1.75 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 29 H 0.03 0.57 5.87 -51.93 -0.30 0.27 16 30 H 0.10 1.64 7.97 -51.93 -0.41 1.23 16 31 H 0.09 1.78 7.42 -51.93 -0.39 1.40 16 32 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.08 1.27 6.01 -51.93 -0.31 0.96 16 37 H 0.11 1.97 7.91 -51.93 -0.41 1.56 16 38 H 0.07 1.18 8.10 -51.93 -0.42 0.75 16 39 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 40 H 0.38 4.75 7.18 45.56 0.33 5.08 16 41 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -31.10 379.18 -9.02 -40.12 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.52 Total: 11.83 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.41 Total: -7.12 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.25 Total: -44.37 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.39 Total: -20.48 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.10 -9.02 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.799 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds