Wall clock time and date at job start Tue Mar 31 2020 12:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38233 * 119.61676 * 94.72659 * 12 11 10 14 14 C 1.38628 * 119.15533 * 179.75445 * 13 12 11 15 15 C 1.38668 * 118.42368 * 0.51409 * 14 13 12 16 16 C 1.38178 * 119.16300 * 359.72792 * 15 14 13 17 17 N 1.31849 * 119.61920 * 275.00328 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 C 1.53001 * 109.46886 * 180.02562 * 21 20 18 23 23 O 1.42898 * 112.85457 * 53.79921 * 22 21 20 24 24 C 1.53785 * 113.61129 * 282.49141 * 22 21 20 25 25 C 1.53782 * 87.08416 * 220.01965 * 24 22 21 26 26 C 1.53781 * 113.61359 * 184.99815 * 22 21 20 27 27 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 29 29 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 30 30 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 31 31 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 32 32 H 1.07999 * 120.41697 * 359.97438 * 13 12 11 33 33 H 1.08006 * 120.78684 * 180.26196 * 14 13 12 34 34 H 1.08005 * 120.41758 * 179.70858 * 15 14 13 35 35 H 1.08004 * 119.61657 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 37 37 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 38 38 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 39 39 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 40 40 H 0.96707 * 113.99846 * 309.66943 * 23 22 21 41 41 H 1.09001 * 113.61633 * 334.57474 * 24 22 21 42 42 H 1.09000 * 113.61144 * 105.46830 * 24 22 21 43 43 H 1.09004 * 113.61448 * 270.88673 * 25 24 22 44 44 H 1.09002 * 113.61332 * 139.98082 * 25 24 22 45 45 H 1.08993 * 113.61692 * 254.52688 * 26 22 21 46 46 H 1.09002 * 113.61799 * 25.43079 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9522 -1.9985 2.5787 14 6 7.2643 -1.7924 2.9760 15 6 8.2471 -2.6273 2.4662 16 6 7.8880 -3.6334 1.5898 17 7 6.6285 -3.8034 1.2376 18 6 4.2239 -3.2110 -1.1682 19 8 4.6277 -4.3546 -1.1681 20 6 3.9718 -2.5011 -2.4733 21 6 4.3022 -3.4389 -3.6362 22 6 4.0468 -2.7179 -4.9612 23 8 4.7321 -1.4674 -5.0537 24 6 2.5590 -2.6368 -5.3415 25 6 2.9942 -2.9218 -6.7887 26 6 4.2327 -3.6150 -6.1964 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8912 30 1 3.5640 -2.8814 2.0276 31 1 4.0774 -4.3350 1.1377 32 1 5.1617 -1.3644 2.9520 33 1 7.5156 -0.9979 3.6630 34 1 9.2804 -2.4927 2.7504 35 1 8.6476 -4.2876 1.1880 36 1 4.6017 -1.6134 -2.5317 37 1 2.9237 -2.2072 -2.5305 38 1 5.3503 -3.7331 -3.5792 39 1 3.6721 -4.3263 -3.5776 40 1 4.6000 -0.8891 -4.2899 41 1 1.9525 -3.4297 -4.9037 42 1 2.1262 -1.6461 -5.2028 43 1 3.2279 -2.0230 -7.3594 44 1 2.3264 -3.6001 -7.3199 45 1 5.1510 -3.4139 -6.7479 46 1 4.0838 -4.6753 -5.9924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601036449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:58 Heat of formation + Delta-G solvation = -52.302019 kcal Electronic energy + Delta-G solvation = -27214.739666 eV Core-core repulsion = 23490.126049 eV Total energy + Delta-G solvation = -3724.613617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.43283 -40.84996 -40.07812 -36.89160 -35.61741 -34.71056 -33.77044 -33.31573 -32.57749 -29.96852 -28.38430 -26.80863 -26.25192 -24.63850 -24.15550 -23.41339 -22.45298 -20.59099 -19.91077 -19.11578 -18.37447 -17.70753 -17.31058 -17.13768 -16.92158 -16.72397 -16.27114 -16.01064 -15.92627 -15.85991 -14.88627 -14.73989 -14.65337 -14.41050 -14.13311 -14.07060 -13.87610 -13.71211 -13.38389 -13.16089 -12.89522 -12.84347 -12.69736 -12.55188 -12.38344 -12.07062 -12.02259 -12.00909 -11.73510 -11.68770 -11.08233 -10.82653 -10.79941 -10.68950 -10.53843 -10.34475 -9.94935 -9.44969 -8.27941 -6.35645 0.13440 0.41172 1.41082 1.42960 1.51809 1.78266 2.24358 2.35446 2.99111 3.05934 3.11618 3.39096 3.53667 3.61535 3.70738 3.84158 3.91866 4.02372 4.10206 4.14350 4.20599 4.26517 4.28137 4.48057 4.57680 4.61871 4.67550 4.72324 4.79292 4.80550 4.84642 4.86578 4.87265 4.96513 5.04807 5.07241 5.21818 5.24111 5.27672 5.36780 5.44524 5.46295 5.66004 5.81858 6.20255 6.60791 6.71495 6.72929 7.15028 7.25945 7.38303 8.88075 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008658 B = 0.005222 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.161123 B = 5360.255320 C = 7613.705279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.538 4.538 8 H 0.031 0.969 9 C 0.220 3.780 10 N -0.592 5.592 11 C 0.167 3.833 12 C 0.095 3.905 13 C -0.167 4.167 14 C -0.076 4.076 15 C -0.165 4.165 16 C 0.078 3.922 17 N -0.500 5.500 18 C 0.511 3.489 19 O -0.575 6.575 20 C -0.133 4.133 21 C -0.105 4.105 22 C 0.105 3.895 23 O -0.554 6.554 24 C -0.171 4.171 25 C -0.127 4.127 26 C -0.123 4.123 27 H 0.268 0.732 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.386 0.614 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.296 -0.564 -1.789 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.576 4.576 8 H 0.049 0.951 9 C 0.098 3.902 10 N -0.322 5.322 11 C 0.043 3.957 12 C -0.043 4.043 13 C -0.188 4.188 14 C -0.102 4.102 15 C -0.184 4.184 16 C -0.080 4.080 17 N -0.210 5.210 18 C 0.301 3.699 19 O -0.455 6.455 20 C -0.173 4.173 21 C -0.143 4.143 22 C 0.064 3.936 23 O -0.363 6.363 24 C -0.209 4.209 25 C -0.164 4.164 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.300 -1.962 -2.927 14.728 hybrid contribution -0.532 1.500 1.377 2.104 sum 13.768 -0.462 -1.551 13.863 Atomic orbital electron populations 1.70052 1.08383 1.28316 1.51227 1.25726 0.95342 1.02828 0.93670 0.85897 0.79876 0.78628 0.79808 1.18521 1.21344 1.16111 1.21462 0.91021 0.93210 1.51945 0.95072 1.19643 0.92993 0.78892 0.98629 1.47901 1.63967 1.15552 1.04778 1.20116 0.90816 0.98229 0.86566 1.21591 0.95458 0.92888 0.94343 1.22241 0.99329 0.98283 0.98905 1.21992 0.91650 0.98760 0.97771 1.22522 1.02227 0.95742 0.97948 1.23253 0.92555 0.97175 0.94987 1.67533 1.01981 1.28021 1.23495 1.20955 0.76173 0.86388 0.86417 1.90618 1.47768 1.19126 1.88000 1.21596 1.04383 0.99917 0.91366 1.21745 1.02233 0.98053 0.92303 1.22310 0.92204 0.85071 0.94000 1.86392 1.73397 1.28530 1.47949 1.23650 0.96556 1.02566 0.98088 1.22719 0.97243 1.00875 0.95550 1.23053 0.99459 0.98861 0.94684 0.92309 0.93718 0.93637 0.88318 0.91120 0.83873 0.81474 0.81237 0.81257 0.88125 0.88684 0.91823 0.91087 0.76350 0.89486 0.91618 0.90060 0.89933 0.90617 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 2 C 0.02 1.23 5.47 84.66 0.46 1.69 16 3 Si 0.94 38.06 27.47 68.60 1.88 39.95 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.24 -8.61 6.54 99.48 0.65 -7.96 16 7 C -0.54 -27.52 9.83 25.60 0.25 -27.27 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.22 9.13 4.03 85.63 0.35 9.47 16 10 N -0.59 -24.14 2.44 -830.50 -2.03 -26.17 16 11 C 0.17 6.34 5.71 85.63 0.49 6.83 16 12 C 0.10 3.22 6.36 42.55 0.27 3.49 16 13 C -0.17 -4.52 9.72 22.36 0.22 -4.30 16 14 C -0.08 -1.55 10.18 22.47 0.23 -1.32 16 15 C -0.16 -3.20 10.11 22.36 0.23 -2.97 16 16 C 0.08 2.00 11.18 84.67 0.95 2.95 16 17 N -0.50 -17.39 10.27 -183.89 -1.89 -19.28 16 18 C 0.51 21.16 7.67 87.66 0.67 21.83 16 19 O -0.57 -26.46 15.56 -3.02 -0.05 -26.51 16 20 C -0.13 -4.59 3.82 29.85 0.11 -4.47 16 21 C -0.11 -3.27 4.14 30.59 0.13 -3.14 16 22 C 0.11 2.85 1.38 -10.27 -0.01 2.84 16 23 O -0.55 -15.33 13.39 -148.98 -1.99 -17.33 16 24 C -0.17 -4.50 7.32 31.12 0.23 -4.27 16 25 C -0.13 -2.80 8.02 31.12 0.25 -2.55 16 26 C -0.12 -2.86 7.47 31.12 0.23 -2.63 16 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.04 1.76 7.13 -2.39 -0.02 1.74 16 29 H 0.05 1.75 5.87 -2.39 -0.01 1.74 16 30 H 0.10 3.54 7.97 -2.39 -0.02 3.52 16 31 H 0.07 2.93 7.42 -2.39 -0.02 2.91 16 32 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.10 3.03 6.01 -2.39 -0.01 3.02 16 37 H 0.09 3.55 7.91 -2.39 -0.02 3.54 16 38 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 39 H 0.07 2.31 8.01 -2.39 -0.02 2.30 16 40 H 0.39 9.13 7.18 -74.05 -0.53 8.59 16 41 H 0.09 2.32 8.04 -2.39 -0.02 2.30 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.10 2.15 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -70.08 379.18 1.66 -68.41 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.39 Total: 38.63 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.05 Total: -3.83 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -3.62 Total: -99.33 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.04 Total: -43.83 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.88 Total: 39.95 kcal Total: -70.08 1.66 -68.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds