Wall clock time and date at job start Tue Mar 31 2020 12:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48495 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46756 * 299.99960 * 3 2 1 6 6 H 1.48501 * 109.47283 * 59.99832 * 3 2 1 7 7 C 1.37878 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99916 * 181.29773 * 7 2 1 9 9 C 1.50695 * 120.00196 * 1.29623 * 7 2 1 10 10 C 1.53005 * 115.55215 * 324.45426 * 9 7 2 11 11 N 1.46897 * 109.46749 * 305.92356 * 10 9 7 12 12 C 1.47853 * 110.99668 * 284.61599 * 11 10 9 13 13 C 1.54905 * 104.79454 * 213.64175 * 12 11 10 14 14 C 1.55137 * 101.65357 * 37.07101 * 13 12 11 15 15 C 1.47446 * 110.99870 * 163.78236 * 11 10 9 16 16 H 1.08996 * 109.88370 * 242.66052 * 15 11 10 17 17 C 1.50708 * 109.88727 * 3.68109 * 15 11 10 18 18 O 1.21277 * 119.99493 * 49.43401 * 17 15 11 19 19 N 1.34769 * 119.99943 * 229.43223 * 17 15 11 20 20 C 1.46500 * 119.99919 * 180.02562 * 19 17 15 21 21 C 1.50701 * 109.47404 * 180.02562 * 20 19 17 22 22 C 1.34509 * 125.79045 * 89.99715 * 21 20 19 23 23 C 1.41389 * 106.83784 * 180.02562 * 22 21 20 24 24 C 1.34510 * 106.84517 * 359.97438 * 23 22 21 25 25 O 1.34305 * 125.78552 * 269.69695 * 21 20 19 26 26 C 1.53008 * 117.50024 * 110.12599 * 9 7 2 27 27 C 1.53004 * 117.50142 * 178.78666 * 9 7 2 28 28 H 0.97000 * 120.00087 * 5.01107 * 1 2 3 29 29 H 1.08994 * 109.47118 * 185.91666 * 10 9 7 30 30 H 1.09001 * 109.46629 * 65.91988 * 10 9 7 31 31 H 1.08999 * 110.37296 * 332.47128 * 12 11 10 32 32 H 1.08998 * 110.36614 * 94.81393 * 12 11 10 33 33 H 1.09003 * 110.99150 * 278.97811 * 13 12 11 34 34 H 1.09001 * 110.99000 * 155.16870 * 13 12 11 35 35 H 1.09010 * 110.70435 * 205.96033 * 14 13 12 36 36 H 1.08997 * 110.70445 * 82.73244 * 14 13 12 37 37 H 0.96997 * 120.00170 * 0.02562 * 19 17 15 38 38 H 1.08998 * 109.47464 * 300.00448 * 20 19 17 39 39 H 1.09006 * 109.47139 * 60.00227 * 20 19 17 40 40 H 1.07999 * 126.57806 * 359.97040 * 22 21 20 41 41 H 1.08000 * 126.57341 * 179.97438 * 23 22 21 42 42 H 1.07993 * 125.79510 * 180.02562 * 24 23 22 43 43 H 1.09002 * 117.49856 * 215.00540 * 26 9 7 44 44 H 1.09000 * 117.49267 * 0.02562 * 26 9 7 45 45 H 1.09001 * 117.49420 * 359.97174 * 27 9 7 46 46 H 1.08998 * 117.50174 * 145.00011 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1942 0.0217 9 6 1.2513 -2.4990 -0.0284 10 6 -0.0669 -2.5175 0.7483 11 7 0.1736 -2.0842 2.1311 12 6 0.8270 -3.1538 2.9154 13 6 0.2646 -2.9924 4.3497 14 6 -1.2064 -2.5894 4.0661 15 6 -1.0899 -1.7186 2.7975 16 1 -1.0725 -0.6639 3.0720 17 6 -2.2520 -1.9896 1.8770 18 8 -2.3473 -3.0629 1.3205 19 7 -3.1854 -1.0392 1.6725 20 6 -4.3154 -1.3027 0.7782 21 6 -5.2061 -0.0884 0.7227 22 6 -5.0941 0.9302 -0.1486 23 6 -6.1269 1.8461 0.1570 24 6 -6.8086 1.3322 1.1965 25 8 -6.2499 0.1576 1.5313 26 6 1.3275 -3.3305 -1.3106 27 6 2.0736 -3.7890 -0.0551 28 1 -0.4850 0.8368 -0.0734 29 1 -0.4735 -3.5288 0.7498 30 1 -0.7776 -1.8409 0.2738 31 1 0.5659 -4.1327 2.5133 32 1 1.9085 -3.0182 2.9143 33 1 0.7889 -2.2028 4.8882 34 1 0.3131 -3.9342 4.8964 35 1 -1.6140 -2.0105 4.8949 36 1 -1.8172 -3.4713 3.8734 37 1 -3.1090 -0.1806 2.1173 38 1 -3.9432 -1.5258 -0.2217 39 1 -4.8841 -2.1541 1.1524 40 1 -4.3562 1.0297 -0.9309 41 1 -6.3295 2.7794 -0.3473 42 1 -7.6631 1.7849 1.6772 43 1 0.4386 -3.8906 -1.6008 44 1 1.9228 -2.9337 -2.1330 45 1 3.1595 -3.6937 -0.0521 46 1 1.6756 -4.6508 0.4806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602782990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:44 Heat of formation + Delta-G solvation = 32.484514 kcal Electronic energy + Delta-G solvation = -28062.952408 eV Core-core repulsion = 24342.015411 eV Total energy + Delta-G solvation = -3720.936997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60748 -40.03571 -37.34954 -35.90729 -34.64249 -32.97489 -31.96043 -30.71940 -30.58606 -28.69307 -25.76063 -25.49403 -24.45462 -21.78926 -21.68266 -21.14676 -20.56196 -20.51901 -19.47988 -18.89349 -17.52740 -16.78687 -16.24128 -15.83474 -15.53871 -14.93557 -14.84070 -14.56475 -14.34110 -13.90181 -13.53538 -13.40958 -13.12128 -12.86615 -12.81390 -12.65970 -12.38090 -12.02419 -11.76433 -11.44651 -11.30118 -11.17460 -10.94018 -10.77031 -10.62188 -10.42718 -10.34857 -10.22892 -9.98107 -9.75962 -9.41372 -9.23609 -8.78095 -8.65464 -8.57546 -8.45716 -7.94443 -7.03380 -5.76099 -3.84501 1.58149 2.54111 2.89055 3.17691 3.35594 3.43638 3.48473 3.76802 4.52102 4.58638 4.87491 4.99544 5.00808 5.06345 5.19314 5.21877 5.37474 5.48516 5.58706 5.74459 5.76111 5.78359 5.89717 5.94706 5.99483 6.04126 6.12557 6.21252 6.29177 6.36847 6.44598 6.57519 6.64147 6.69474 6.72976 6.80394 6.83583 7.05476 7.08301 7.12905 7.30254 7.44828 7.72132 7.88002 8.05339 8.27064 8.30122 8.67110 8.74030 9.10751 9.75225 11.19915 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004918 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.345602 B = 5692.373414 C = 6820.496792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.085 3.915 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.465 4.465 8 H 0.052 0.948 9 C 0.063 3.937 10 C 0.096 3.904 11 N -0.457 5.457 12 C 0.045 3.955 13 C -0.127 4.127 14 C -0.131 4.131 15 C 0.069 3.931 16 H 0.090 0.910 17 C 0.525 3.475 18 O -0.544 6.544 19 N -0.723 5.723 20 C 0.206 3.794 21 C -0.030 4.030 22 C -0.182 4.182 23 C -0.215 4.215 24 C -0.040 4.040 25 O -0.175 6.175 26 C -0.210 4.210 27 C -0.217 4.217 28 H 0.251 0.749 29 H 0.014 0.986 30 H 0.120 0.880 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.201 0.799 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 1.397 6.319 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.117 4.117 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.062 3.938 10 C -0.031 4.031 11 N -0.180 5.180 12 C -0.083 4.083 13 C -0.165 4.165 14 C -0.169 4.169 15 C -0.043 4.043 16 H 0.107 0.893 17 C 0.313 3.687 18 O -0.421 6.421 19 N -0.377 5.377 20 C 0.082 3.918 21 C -0.080 4.080 22 C -0.202 4.202 23 C -0.235 4.235 24 C -0.109 4.109 25 O -0.071 6.071 26 C -0.248 4.248 27 C -0.254 4.254 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.138 0.862 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.218 0.782 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.535 0.981 6.173 13.119 hybrid contribution -0.007 0.951 -0.212 0.975 sum -11.542 1.932 5.961 13.133 Atomic orbital electron populations 1.69861 1.05633 1.25207 1.50436 1.24740 0.94657 0.98192 0.94110 0.86621 0.80186 0.84357 0.77115 1.20189 1.21608 1.21208 1.20388 0.91801 0.88806 1.49291 0.93000 1.19098 0.93299 0.89003 0.92410 1.22369 0.97710 0.96840 0.86204 1.63864 1.15111 1.36566 1.02487 1.23134 1.00248 0.93641 0.91315 1.22701 0.94889 1.00951 0.97977 1.22770 0.98087 0.99547 0.96545 1.22522 0.88380 1.00962 0.92442 0.89256 1.21199 0.82311 0.83246 0.81974 1.90676 1.75629 1.25340 1.50421 1.46064 1.24613 1.18502 1.48477 1.19495 0.84638 0.90792 0.96860 1.22425 0.91562 0.99808 0.94193 1.21799 1.01430 0.94466 1.02531 1.21883 0.98645 1.02393 1.00529 1.24040 1.01124 0.85916 0.99775 1.84029 1.37342 1.35345 1.50366 1.22957 1.01073 1.07712 0.93099 1.22903 0.97711 1.01192 1.03595 0.93877 0.96790 0.86219 0.94587 0.90275 0.90870 0.91575 0.91146 0.91305 0.76452 0.88361 0.90457 0.82868 0.83427 0.78190 0.92046 0.90700 0.91096 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.67 10.26 55.43 0.57 -22.10 16 2 C 0.08 2.24 5.29 -17.82 -0.09 2.15 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.47 -12.63 8.74 -34.44 -0.30 -12.93 16 8 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 9 C 0.06 1.59 1.85 -155.65 -0.29 1.30 16 10 C 0.10 2.32 2.33 -3.82 -0.01 2.31 16 11 N -0.46 -9.91 4.57 -224.72 -1.03 -10.94 16 12 C 0.04 0.86 6.01 -2.29 -0.01 0.84 16 13 C -0.13 -1.92 7.08 -24.60 -0.17 -2.09 16 14 C -0.13 -2.00 6.46 -24.92 -0.16 -2.16 16 15 C 0.07 1.28 3.83 -67.88 -0.26 1.02 16 16 H 0.09 1.63 7.97 -51.93 -0.41 1.21 16 17 C 0.53 9.97 4.90 -10.99 -0.05 9.92 16 18 O -0.54 -11.96 13.74 5.56 0.08 -11.88 16 19 N -0.72 -11.55 5.55 -61.47 -0.34 -11.89 16 20 C 0.21 3.01 6.20 -5.19 -0.03 2.97 16 21 C -0.03 -0.40 6.69 -35.63 -0.24 -0.64 16 22 C -0.18 -2.37 10.81 -39.70 -0.43 -2.80 16 23 C -0.22 -2.36 10.91 -39.70 -0.43 -2.79 16 24 C -0.04 -0.41 12.09 29.41 0.36 -0.05 16 25 O -0.17 -2.22 10.65 5.68 0.06 -2.16 16 26 C -0.21 -5.03 9.96 -26.69 -0.27 -5.30 16 27 C -0.22 -4.97 9.51 -26.69 -0.25 -5.23 16 28 H 0.25 6.29 8.32 -40.82 -0.34 5.95 16 29 H 0.01 0.36 6.02 -51.93 -0.31 0.05 16 30 H 0.12 3.14 4.23 -51.93 -0.22 2.92 16 31 H 0.04 0.72 7.42 -51.93 -0.39 0.33 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.07 1.10 7.78 -51.93 -0.40 0.69 16 37 H 0.40 5.84 8.34 -40.82 -0.34 5.50 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -30.20 371.67 -9.85 -40.05 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.11 Total: 10.86 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.65 Total: -13.48 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.80 Total: -44.93 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.14 Total: -14.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.20 -9.85 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.533 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds