Wall clock time and date at job start Tue Mar 31 2020 12:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48495 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46756 * 299.99960 * 3 2 1 6 6 H 1.48501 * 109.47283 * 59.99832 * 3 2 1 7 7 C 1.37878 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99916 * 181.29773 * 7 2 1 9 9 C 1.50695 * 120.00196 * 1.29623 * 7 2 1 10 10 C 1.53005 * 115.55215 * 324.45426 * 9 7 2 11 11 N 1.46897 * 109.46749 * 305.92356 * 10 9 7 12 12 C 1.47853 * 110.99668 * 284.61599 * 11 10 9 13 13 C 1.54905 * 104.79454 * 213.64175 * 12 11 10 14 14 C 1.55137 * 101.65357 * 37.07101 * 13 12 11 15 15 C 1.47446 * 110.99870 * 163.78236 * 11 10 9 16 16 H 1.08996 * 109.88370 * 242.66052 * 15 11 10 17 17 C 1.50708 * 109.88727 * 3.68109 * 15 11 10 18 18 O 1.21277 * 119.99493 * 49.43401 * 17 15 11 19 19 N 1.34769 * 119.99943 * 229.43223 * 17 15 11 20 20 C 1.46500 * 119.99919 * 180.02562 * 19 17 15 21 21 C 1.50701 * 109.47404 * 180.02562 * 20 19 17 22 22 C 1.34509 * 125.79045 * 89.99715 * 21 20 19 23 23 C 1.41389 * 106.83784 * 180.02562 * 22 21 20 24 24 C 1.34510 * 106.84517 * 359.97438 * 23 22 21 25 25 O 1.34305 * 125.78552 * 269.69695 * 21 20 19 26 26 C 1.53008 * 117.50024 * 110.12599 * 9 7 2 27 27 C 1.53004 * 117.50142 * 178.78666 * 9 7 2 28 28 H 0.97000 * 120.00087 * 5.01107 * 1 2 3 29 29 H 1.08994 * 109.47118 * 185.91666 * 10 9 7 30 30 H 1.09001 * 109.46629 * 65.91988 * 10 9 7 31 31 H 1.08999 * 110.37296 * 332.47128 * 12 11 10 32 32 H 1.08998 * 110.36614 * 94.81393 * 12 11 10 33 33 H 1.09003 * 110.99150 * 278.97811 * 13 12 11 34 34 H 1.09001 * 110.99000 * 155.16870 * 13 12 11 35 35 H 1.09010 * 110.70435 * 205.96033 * 14 13 12 36 36 H 1.08997 * 110.70445 * 82.73244 * 14 13 12 37 37 H 0.96997 * 120.00170 * 0.02562 * 19 17 15 38 38 H 1.08998 * 109.47464 * 300.00448 * 20 19 17 39 39 H 1.09006 * 109.47139 * 60.00227 * 20 19 17 40 40 H 1.07999 * 126.57806 * 359.97040 * 22 21 20 41 41 H 1.08000 * 126.57341 * 179.97438 * 23 22 21 42 42 H 1.07993 * 125.79510 * 180.02562 * 24 23 22 43 43 H 1.09002 * 117.49856 * 215.00540 * 26 9 7 44 44 H 1.09000 * 117.49267 * 0.02562 * 26 9 7 45 45 H 1.09001 * 117.49420 * 359.97174 * 27 9 7 46 46 H 1.08998 * 117.50174 * 145.00011 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1942 0.0217 9 6 1.2513 -2.4990 -0.0284 10 6 -0.0669 -2.5175 0.7483 11 7 0.1736 -2.0842 2.1311 12 6 0.8270 -3.1538 2.9154 13 6 0.2646 -2.9924 4.3497 14 6 -1.2064 -2.5894 4.0661 15 6 -1.0899 -1.7186 2.7975 16 1 -1.0725 -0.6639 3.0720 17 6 -2.2520 -1.9896 1.8770 18 8 -2.3473 -3.0629 1.3205 19 7 -3.1854 -1.0392 1.6725 20 6 -4.3154 -1.3027 0.7782 21 6 -5.2061 -0.0884 0.7227 22 6 -5.0941 0.9302 -0.1486 23 6 -6.1269 1.8461 0.1570 24 6 -6.8086 1.3322 1.1965 25 8 -6.2499 0.1576 1.5313 26 6 1.3275 -3.3305 -1.3106 27 6 2.0736 -3.7890 -0.0551 28 1 -0.4850 0.8368 -0.0734 29 1 -0.4735 -3.5288 0.7498 30 1 -0.7776 -1.8409 0.2738 31 1 0.5659 -4.1327 2.5133 32 1 1.9085 -3.0182 2.9143 33 1 0.7889 -2.2028 4.8882 34 1 0.3131 -3.9342 4.8964 35 1 -1.6140 -2.0105 4.8949 36 1 -1.8172 -3.4713 3.8734 37 1 -3.1090 -0.1806 2.1173 38 1 -3.9432 -1.5258 -0.2217 39 1 -4.8841 -2.1541 1.1524 40 1 -4.3562 1.0297 -0.9309 41 1 -6.3295 2.7794 -0.3473 42 1 -7.6631 1.7849 1.6772 43 1 0.4386 -3.8906 -1.6008 44 1 1.9228 -2.9337 -2.1330 45 1 3.1595 -3.6937 -0.0521 46 1 1.6756 -4.6508 0.4806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602782990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:44 Heat of formation + Delta-G solvation = 13.633222 kcal Electronic energy + Delta-G solvation = -28063.769862 eV Core-core repulsion = 24342.015411 eV Total energy + Delta-G solvation = -3721.754450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54169 -41.54695 -38.94539 -37.64254 -36.01240 -33.98251 -33.92292 -32.25339 -31.77330 -29.99666 -27.51929 -26.88839 -26.20789 -23.08741 -22.99811 -22.70016 -21.96762 -21.60375 -21.00198 -20.68526 -18.71542 -18.22749 -17.70603 -17.23680 -16.80089 -16.55117 -16.25553 -16.13223 -15.87059 -15.29830 -15.11027 -14.97171 -14.64745 -14.29883 -13.97130 -13.78538 -13.54195 -13.49032 -13.14591 -13.04781 -12.89996 -12.85402 -12.73204 -12.48756 -12.26408 -12.17755 -11.90237 -11.74283 -11.58992 -11.14586 -11.00018 -10.85426 -10.63596 -10.47224 -10.07369 -9.91670 -9.53590 -8.69786 -7.76305 -5.92069 0.62586 1.46970 1.50880 1.59443 1.61994 1.69293 1.96537 2.48889 2.55413 3.14933 3.44901 3.62208 3.72001 3.78753 3.91332 3.96048 4.10402 4.13731 4.29304 4.37395 4.40427 4.50446 4.53169 4.62497 4.72502 4.85782 4.87934 4.90098 4.91785 4.97569 5.00915 5.05334 5.07539 5.13164 5.15206 5.27657 5.36419 5.42443 5.46169 5.53302 5.55540 5.73701 6.15562 6.16026 6.43499 6.48842 6.59441 6.70427 7.06027 7.30044 7.68410 9.16838 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004918 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.345602 B = 5692.373414 C = 6820.496792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.053 3.947 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.489 4.489 8 H 0.036 0.964 9 C 0.038 3.962 10 C 0.119 3.881 11 N -0.477 5.477 12 C 0.041 3.959 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.062 3.938 16 H 0.093 0.907 17 C 0.523 3.477 18 O -0.581 6.581 19 N -0.712 5.712 20 C 0.211 3.789 21 C -0.047 4.047 22 C -0.192 4.192 23 C -0.229 4.229 24 C -0.023 4.023 25 O -0.185 6.185 26 C -0.214 4.214 27 C -0.197 4.197 28 H 0.253 0.747 29 H -0.007 1.007 30 H 0.098 0.902 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.246 0.754 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 2.821 8.122 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.149 4.149 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.008 4.008 11 N -0.200 5.200 12 C -0.087 4.087 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.050 4.050 16 H 0.111 0.889 17 C 0.311 3.689 18 O -0.460 6.460 19 N -0.364 5.364 20 C 0.087 3.913 21 C -0.097 4.097 22 C -0.212 4.212 23 C -0.248 4.248 24 C -0.091 4.091 25 O -0.081 6.081 26 C -0.253 4.253 27 C -0.234 4.234 28 H 0.063 0.937 29 H 0.011 0.989 30 H 0.116 0.884 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.163 0.837 41 H 0.188 0.812 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.686 2.429 7.985 15.185 hybrid contribution 0.281 0.570 -0.807 1.027 sum -12.405 2.999 7.179 14.642 Atomic orbital electron populations 1.69981 1.06066 1.25712 1.49629 1.25258 0.95489 1.00306 0.93810 0.85778 0.78780 0.81260 0.77099 1.20720 1.21455 1.20622 1.20442 0.91189 0.90120 1.50867 0.94526 1.19268 0.94335 0.89325 0.93340 1.21933 0.96242 0.94906 0.87738 1.63719 1.17088 1.37451 1.01789 1.23128 0.99589 0.92246 0.93737 1.22675 0.94235 1.02820 0.95429 1.22759 0.98334 0.99058 0.95839 1.22632 0.87036 1.01758 0.93539 0.88873 1.21305 0.82775 0.83108 0.81719 1.90655 1.76600 1.26893 1.51887 1.45987 1.24327 1.18141 1.47955 1.19347 0.84434 0.91920 0.95561 1.22047 0.92502 0.99706 0.95413 1.21943 1.01955 0.95114 1.02164 1.22174 0.98197 1.03087 1.01305 1.24933 1.01021 0.84310 0.98806 1.84023 1.37122 1.36622 1.50358 1.22951 1.01389 1.07831 0.93137 1.22836 0.97647 1.00442 1.02460 0.93748 0.98948 0.88425 0.95973 0.91402 0.89578 0.88927 0.87688 0.92069 0.75570 0.90162 0.90181 0.83739 0.81228 0.73838 0.91891 0.90966 0.90712 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.84 10.26 21.45 0.22 -45.62 16 2 C 0.05 2.80 5.29 84.66 0.45 3.25 16 3 Si 0.94 43.03 29.54 68.60 2.03 45.05 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.49 -26.93 8.74 25.60 0.22 -26.71 16 8 H 0.04 2.07 7.81 -2.91 -0.02 2.05 16 9 C 0.04 1.97 1.85 -52.92 -0.10 1.87 16 10 C 0.12 5.95 2.33 86.31 0.20 6.15 16 11 N -0.48 -20.80 4.57 -864.89 -3.95 -24.75 16 12 C 0.04 1.56 6.01 86.77 0.52 2.08 16 13 C -0.11 -3.17 7.08 31.98 0.23 -2.94 16 14 C -0.12 -3.45 6.46 31.77 0.21 -3.25 16 15 C 0.06 2.27 3.83 44.51 0.17 2.44 16 16 H 0.09 3.29 7.97 -2.39 -0.02 3.27 16 17 C 0.52 20.12 4.90 87.66 0.43 20.55 16 18 O -0.58 -26.36 13.74 -3.02 -0.04 -26.40 16 19 N -0.71 -22.94 5.55 -466.79 -2.59 -25.53 16 20 C 0.21 6.33 6.20 85.63 0.53 6.86 16 21 C -0.05 -1.25 6.69 24.83 0.17 -1.08 16 22 C -0.19 -4.91 10.81 22.19 0.24 -4.67 16 23 C -0.23 -4.51 10.91 22.19 0.24 -4.27 16 24 C -0.02 -0.40 12.09 66.97 0.81 0.41 16 25 O -0.18 -4.38 10.65 -2.60 -0.03 -4.41 16 26 C -0.21 -10.51 9.96 30.62 0.30 -10.20 16 27 C -0.20 -9.12 9.51 30.62 0.29 -8.83 16 28 H 0.25 12.67 8.32 -92.71 -0.77 11.90 16 29 H -0.01 -0.39 6.02 -2.39 -0.01 -0.40 16 30 H 0.10 5.29 4.23 -2.39 -0.01 5.28 16 31 H 0.02 0.89 7.42 -2.39 -0.02 0.87 16 32 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.06 1.86 7.78 -2.39 -0.02 1.84 16 37 H 0.41 11.77 8.34 -92.71 -0.77 11.00 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 41 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.25 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.07 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.07 3.18 8.04 -2.39 -0.02 3.17 16 Total: -1.00 -66.12 371.67 0.76 -65.36 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.21 Total: 34.64 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.91 Total: -18.33 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -6.32 Total: -95.91 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.81 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.12 0.76 -65.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.993 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds