Wall clock time and date at job start Tue Mar 31 2020 12:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 110.01570 * 2 1 4 4 C 1.34770 * 120.00046 * 59.02267 * 3 2 1 5 5 O 1.21592 * 120.00094 * 0.27701 * 4 3 2 6 6 N 1.34779 * 120.00004 * 180.27079 * 4 3 2 7 7 C 1.46505 * 120.00176 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47118 * 180.02562 * 7 6 4 9 9 C 1.38301 * 119.92838 * 269.73129 * 8 7 6 10 10 C 1.38097 * 120.07086 * 179.72652 * 9 8 7 11 11 C 1.38885 * 119.92574 * 0.57107 * 10 9 8 12 12 O 1.35745 * 120.06722 * 179.68515 * 11 10 9 13 13 C 1.34838 * 116.99820 * 174.47966 * 12 11 10 14 14 H 1.07995 * 119.99877 * 5.05836 * 13 12 11 15 15 C 1.38657 * 119.99821 * 185.05389 * 13 12 11 16 16 N 1.31557 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47383 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46902 * 120.00365 * 17 15 13 20 20 H 1.48497 * 109.46922 * 239.99854 * 17 15 13 21 21 C 1.38874 * 119.86306 * 359.69529 * 11 10 9 22 22 C 1.38104 * 119.93106 * 0.02562 * 21 11 10 23 23 C 1.53876 * 110.03388 * 121.39026 * 2 1 3 24 24 C 1.54364 * 106.54628 * 119.34618 * 23 2 1 25 25 C 1.54894 * 104.21571 * 23.57725 * 24 23 2 26 26 C 1.54261 * 110.03300 * 238.60972 * 2 1 3 27 27 H 1.09004 * 109.47174 * 60.69865 * 1 2 3 28 28 H 1.08997 * 109.47186 * 180.70306 * 1 2 3 29 29 H 1.09004 * 109.47341 * 300.70118 * 1 2 3 30 30 H 0.96997 * 119.99446 * 239.29517 * 3 2 1 31 31 H 0.96998 * 120.00137 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47232 * 300.00693 * 7 6 4 33 33 H 1.09001 * 109.46894 * 60.00352 * 7 6 4 34 34 H 1.08006 * 119.96616 * 359.97338 * 9 8 7 35 35 H 1.07997 * 120.04223 * 180.26704 * 10 9 8 36 36 H 0.97000 * 120.00019 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03768 * 179.97438 * 21 11 10 38 38 H 1.08003 * 119.96608 * 179.97438 * 22 21 11 39 39 H 1.08997 * 110.03432 * 238.62295 * 23 2 1 40 40 H 1.09002 * 110.03054 * 0.04373 * 23 2 1 41 41 H 1.09001 * 110.46548 * 264.89897 * 24 23 2 42 42 H 1.09004 * 110.60715 * 142.32373 * 24 23 2 43 43 H 1.09002 * 110.75148 * 203.75908 * 25 24 23 44 44 H 1.09000 * 110.75534 * 80.38856 * 25 24 23 45 45 H 1.09004 * 110.48668 * 335.72846 * 26 2 1 46 46 H 1.08993 * 110.48955 * 98.24629 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3766 0.0000 4 6 1.6976 2.2153 1.0007 5 8 0.9844 1.8281 1.9061 6 7 2.1545 3.4833 0.9978 7 6 1.7912 4.3953 2.0853 8 6 2.4257 5.7410 1.8455 9 6 3.6825 6.0120 2.3551 10 6 4.2691 7.2422 2.1323 11 6 3.5905 8.2119 1.4056 12 8 4.1617 9.4244 1.1903 13 6 3.5004 10.2778 0.3825 14 1 2.5226 10.0166 0.0057 15 6 4.0758 11.4907 0.0358 16 7 5.2672 11.8087 0.4945 17 14 3.1594 12.6734 -1.0827 18 1 1.8489 12.0846 -1.4583 19 1 2.9387 13.9577 -0.3705 20 1 3.9620 12.9183 -2.3078 21 6 2.3263 7.9387 0.8999 22 6 1.7475 6.7045 1.1213 23 6 2.0571 -0.7530 1.2341 24 6 2.8890 -1.9398 0.7027 25 6 3.3144 -1.4994 -0.7201 26 6 2.0584 -0.7549 -1.2372 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 2.6004 1.6853 -0.7223 31 1 2.7232 3.7923 0.2754 32 1 0.7074 4.5059 2.1200 33 1 2.1455 3.9899 3.0331 34 1 4.2075 5.2593 2.9246 35 1 5.2523 7.4518 2.5268 36 1 5.6695 12.6574 0.2522 37 1 1.7959 8.6909 0.3348 38 1 0.7642 6.4915 0.7286 39 1 2.6859 -0.0943 1.8330 40 1 1.2229 -1.1191 1.8326 41 1 2.2793 -2.8421 0.6564 42 1 3.7658 -2.1046 1.3291 43 1 3.5335 -2.3663 -1.3433 44 1 4.1713 -0.8271 -0.6763 45 1 1.3146 -1.4660 -1.5967 46 1 2.3267 -0.0529 -2.0266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728755495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:08 Heat of formation + Delta-G solvation = -46.058201 kcal Electronic energy + Delta-G solvation = -25809.124393 eV Core-core repulsion = 22084.781528 eV Total energy + Delta-G solvation = -3724.342865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.51091 -39.18972 -38.23030 -36.80272 -34.30016 -33.66547 -32.37013 -30.69761 -30.26548 -29.29081 -29.06710 -25.92243 -25.23071 -24.48330 -22.05340 -21.37061 -21.06568 -20.60156 -19.49633 -18.31618 -18.05862 -17.05725 -16.56434 -15.62669 -15.36603 -15.09467 -14.70650 -14.63905 -14.42749 -14.15681 -13.85810 -13.70662 -13.60595 -13.39190 -13.14878 -12.80783 -12.78215 -12.39030 -12.06738 -11.87644 -11.66853 -11.44382 -11.40725 -11.36251 -11.22362 -11.02206 -10.95167 -10.77991 -10.76817 -10.67756 -10.48472 -9.89710 -9.42703 -9.19178 -8.92278 -8.71588 -8.28454 -7.33117 -6.53785 -4.12619 2.03772 2.12996 2.89001 3.08015 3.08938 3.14474 3.30555 3.89613 4.15931 4.29778 4.34788 4.55302 4.61949 5.01155 5.01369 5.12238 5.16579 5.18648 5.23179 5.26633 5.34417 5.45631 5.45789 5.58810 5.60153 5.66214 5.67546 5.82306 5.82824 5.84022 5.94302 6.01436 6.11921 6.14075 6.21425 6.35606 6.59265 6.61638 6.66789 6.80497 6.92642 7.02684 7.16481 7.28143 7.34995 7.71513 7.91158 8.12191 8.71370 8.91744 9.60150 10.63847 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.002121 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.051627 B =13200.414072 C =13342.555605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 N -0.742 5.742 4 C 0.702 3.298 5 O -0.592 6.592 6 N -0.740 5.740 7 C 0.199 3.801 8 C -0.213 4.213 9 C -0.054 4.054 10 C -0.196 4.196 11 C 0.160 3.840 12 O -0.174 6.174 13 C -0.393 4.393 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.237 4.237 22 C -0.050 4.050 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.126 4.126 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.393 0.607 31 H 0.396 0.604 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -22.879 -3.748 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.104 3.896 3 N -0.398 5.398 4 C 0.402 3.598 5 O -0.471 6.471 6 N -0.395 5.395 7 C 0.076 3.924 8 C -0.215 4.215 9 C -0.073 4.073 10 C -0.215 4.215 11 C 0.106 3.894 12 O -0.077 6.077 13 C -0.469 4.469 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.494 5.494 17 Si 0.767 3.233 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.257 4.257 22 C -0.069 4.069 23 C -0.159 4.159 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.164 4.164 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.227 0.773 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.622 -22.905 -2.818 23.753 hybrid contribution 0.087 1.050 -1.285 1.662 sum -5.535 -21.855 -4.103 22.916 Atomic orbital electron populations 1.22278 0.94247 1.01962 1.03492 1.20735 0.93827 0.80031 0.94980 1.45424 1.55825 1.11925 1.26613 1.16026 0.80478 0.80775 0.82527 1.90867 1.42117 1.76599 1.37532 1.45545 1.55192 1.10247 1.28511 1.19799 0.98581 0.85416 0.88606 1.19237 0.97481 0.95731 1.09025 1.20537 0.93885 0.95427 0.97413 1.20220 1.01301 0.93239 1.06742 1.19440 0.91254 0.86290 0.92455 1.83980 1.45915 1.19210 1.58553 1.21404 1.01891 0.97360 1.26232 0.88875 1.25324 0.96121 0.97256 0.97820 1.70045 1.14398 1.22968 1.41965 0.85628 0.79032 0.79568 0.79098 1.19048 1.20066 1.20073 1.21162 0.97247 0.98598 1.08651 1.20647 0.98033 0.92596 0.95630 1.22524 0.99872 0.96491 0.97047 1.22419 0.99653 0.98117 0.96240 1.22508 0.97466 0.99874 0.96402 1.22681 0.98054 0.99218 0.96402 0.92972 0.92164 0.89940 0.77312 0.77036 0.91884 0.91835 0.86980 0.86405 0.91935 0.85444 0.87419 0.91111 0.91069 0.91674 0.91707 0.91437 0.91371 0.90087 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.07 37.16 0.30 -1.29 16 2 C 0.19 1.74 0.94 -130.70 -0.12 1.62 16 3 N -0.74 -7.35 5.07 -51.37 -0.26 -7.61 16 4 C 0.70 9.27 7.70 -86.92 -0.67 8.60 16 5 O -0.59 -9.75 13.53 5.28 0.07 -9.67 16 6 N -0.74 -9.30 5.55 -66.41 -0.37 -9.67 16 7 C 0.20 2.81 5.80 -5.19 -0.03 2.78 16 8 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 9 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 10 C -0.20 -3.93 9.99 -39.39 -0.39 -4.33 16 11 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 12 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 13 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 14 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 15 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 17 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.24 -4.90 9.17 -39.40 -0.36 -5.27 16 22 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 23 C -0.12 -1.18 5.33 -25.56 -0.14 -1.31 16 24 C -0.13 -0.93 6.83 -25.02 -0.17 -1.10 16 25 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 26 C -0.13 -0.83 6.01 -25.07 -0.15 -0.98 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.06 6.13 -51.93 -0.32 0.74 16 30 H 0.39 3.03 8.26 -40.82 -0.34 2.69 16 31 H 0.40 4.42 8.48 -40.82 -0.35 4.07 16 32 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 40 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 46 H 0.07 0.42 7.73 -51.93 -0.40 0.02 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -31.00 373.24 -9.42 -40.42 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.94 Total: 9.34 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.29 Total: -14.71 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.13 Total: -41.17 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.07 Total: -14.49 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.00 -9.42 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728755495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.637 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds