Wall clock time and date at job start Tue Mar 31 2020 12:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 110.01570 * 2 1 4 4 C 1.34770 * 120.00046 * 59.02267 * 3 2 1 5 5 O 1.21592 * 120.00094 * 0.27701 * 4 3 2 6 6 N 1.34779 * 120.00004 * 180.27079 * 4 3 2 7 7 C 1.46505 * 120.00176 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47118 * 180.02562 * 7 6 4 9 9 C 1.38301 * 119.92838 * 269.73129 * 8 7 6 10 10 C 1.38097 * 120.07086 * 179.72652 * 9 8 7 11 11 C 1.38885 * 119.92574 * 0.57107 * 10 9 8 12 12 O 1.35745 * 120.06722 * 179.68515 * 11 10 9 13 13 C 1.34838 * 116.99820 * 174.47966 * 12 11 10 14 14 H 1.07995 * 119.99877 * 5.05836 * 13 12 11 15 15 C 1.38657 * 119.99821 * 185.05389 * 13 12 11 16 16 N 1.31557 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47383 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46902 * 120.00365 * 17 15 13 20 20 H 1.48497 * 109.46922 * 239.99854 * 17 15 13 21 21 C 1.38874 * 119.86306 * 359.69529 * 11 10 9 22 22 C 1.38104 * 119.93106 * 0.02562 * 21 11 10 23 23 C 1.53876 * 110.03388 * 121.39026 * 2 1 3 24 24 C 1.54364 * 106.54628 * 119.34618 * 23 2 1 25 25 C 1.54894 * 104.21571 * 23.57725 * 24 23 2 26 26 C 1.54261 * 110.03300 * 238.60972 * 2 1 3 27 27 H 1.09004 * 109.47174 * 60.69865 * 1 2 3 28 28 H 1.08997 * 109.47186 * 180.70306 * 1 2 3 29 29 H 1.09004 * 109.47341 * 300.70118 * 1 2 3 30 30 H 0.96997 * 119.99446 * 239.29517 * 3 2 1 31 31 H 0.96998 * 120.00137 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47232 * 300.00693 * 7 6 4 33 33 H 1.09001 * 109.46894 * 60.00352 * 7 6 4 34 34 H 1.08006 * 119.96616 * 359.97338 * 9 8 7 35 35 H 1.07997 * 120.04223 * 180.26704 * 10 9 8 36 36 H 0.97000 * 120.00019 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03768 * 179.97438 * 21 11 10 38 38 H 1.08003 * 119.96608 * 179.97438 * 22 21 11 39 39 H 1.08997 * 110.03432 * 238.62295 * 23 2 1 40 40 H 1.09002 * 110.03054 * 0.04373 * 23 2 1 41 41 H 1.09001 * 110.46548 * 264.89897 * 24 23 2 42 42 H 1.09004 * 110.60715 * 142.32373 * 24 23 2 43 43 H 1.09002 * 110.75148 * 203.75908 * 25 24 23 44 44 H 1.09000 * 110.75534 * 80.38856 * 25 24 23 45 45 H 1.09004 * 110.48668 * 335.72846 * 26 2 1 46 46 H 1.08993 * 110.48955 * 98.24629 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3766 0.0000 4 6 1.6976 2.2153 1.0007 5 8 0.9844 1.8281 1.9061 6 7 2.1545 3.4833 0.9978 7 6 1.7912 4.3953 2.0853 8 6 2.4257 5.7410 1.8455 9 6 3.6825 6.0120 2.3551 10 6 4.2691 7.2422 2.1323 11 6 3.5905 8.2119 1.4056 12 8 4.1617 9.4244 1.1903 13 6 3.5004 10.2778 0.3825 14 1 2.5226 10.0166 0.0057 15 6 4.0758 11.4907 0.0358 16 7 5.2672 11.8087 0.4945 17 14 3.1594 12.6734 -1.0827 18 1 1.8489 12.0846 -1.4583 19 1 2.9387 13.9577 -0.3705 20 1 3.9620 12.9183 -2.3078 21 6 2.3263 7.9387 0.8999 22 6 1.7475 6.7045 1.1213 23 6 2.0571 -0.7530 1.2341 24 6 2.8890 -1.9398 0.7027 25 6 3.3144 -1.4994 -0.7201 26 6 2.0584 -0.7549 -1.2372 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 2.6004 1.6853 -0.7223 31 1 2.7232 3.7923 0.2754 32 1 0.7074 4.5059 2.1200 33 1 2.1455 3.9899 3.0331 34 1 4.2075 5.2593 2.9246 35 1 5.2523 7.4518 2.5268 36 1 5.6695 12.6574 0.2522 37 1 1.7959 8.6909 0.3348 38 1 0.7642 6.4915 0.7286 39 1 2.6859 -0.0943 1.8330 40 1 1.2229 -1.1191 1.8326 41 1 2.2793 -2.8421 0.6564 42 1 3.7658 -2.1046 1.3291 43 1 3.5335 -2.3663 -1.3433 44 1 4.1713 -0.8271 -0.6763 45 1 1.3146 -1.4660 -1.5967 46 1 2.3267 -0.0529 -2.0266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728755495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:07 Heat of formation + Delta-G solvation = -65.910972 kcal Electronic energy + Delta-G solvation = -25809.985274 eV Core-core repulsion = 22084.781528 eV Total energy + Delta-G solvation = -3725.203745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45571 -40.79898 -39.20327 -38.34640 -35.54551 -34.54604 -34.23572 -31.87623 -31.71305 -30.46762 -29.68711 -27.65171 -26.35717 -25.59376 -23.64614 -22.45451 -22.01743 -21.64321 -20.35593 -19.87605 -19.29309 -18.80637 -17.43871 -16.67745 -16.50383 -16.23517 -16.14856 -15.92981 -15.75707 -15.52867 -15.23645 -14.88597 -14.78224 -14.39338 -14.32171 -14.19002 -13.86581 -13.67892 -13.39420 -13.04198 -13.02628 -12.60651 -12.52849 -12.34731 -12.21571 -12.09504 -12.06661 -11.95401 -11.87301 -11.69692 -11.40849 -11.20168 -10.98634 -10.79986 -10.21475 -9.82039 -9.67693 -9.01746 -8.48743 -6.16880 0.53224 0.57547 1.35826 1.42845 1.53711 1.89822 2.16746 2.26692 2.80660 3.13261 3.45148 3.48216 3.60569 3.73750 3.89533 3.98023 4.03716 4.17414 4.35897 4.47376 4.48540 4.54449 4.56836 4.59570 4.75472 4.77158 4.81149 4.87272 4.92584 4.95380 5.04389 5.10983 5.14517 5.14947 5.25040 5.26580 5.35359 5.38457 5.49307 5.52116 5.59170 5.68890 5.76039 5.80870 6.01335 6.10443 6.16592 6.96218 7.19475 7.70758 7.75546 8.74294 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.002121 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.051627 B =13200.414072 C =13342.555605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.184 3.816 3 N -0.729 5.729 4 C 0.700 3.300 5 O -0.626 6.626 6 N -0.735 5.735 7 C 0.206 3.794 8 C -0.180 4.180 9 C -0.043 4.043 10 C -0.204 4.204 11 C 0.123 3.877 12 O -0.229 6.229 13 C -0.412 4.412 14 H 0.104 0.896 15 C -0.023 4.023 16 N -0.919 5.919 17 Si 1.018 2.982 18 H -0.251 1.251 19 H -0.270 1.270 20 H -0.268 1.268 21 C -0.243 4.243 22 C -0.045 4.045 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.406 0.594 31 H 0.405 0.595 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.273 0.727 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -25.643 -5.250 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.098 3.902 3 N -0.385 5.385 4 C 0.400 3.600 5 O -0.507 6.507 6 N -0.390 5.390 7 C 0.082 3.918 8 C -0.182 4.182 9 C -0.061 4.061 10 C -0.223 4.223 11 C 0.072 3.928 12 O -0.135 6.135 13 C -0.488 4.488 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.557 5.557 17 Si 0.838 3.162 18 H -0.174 1.174 19 H -0.195 1.195 20 H -0.193 1.193 21 C -0.262 4.262 22 C -0.063 4.063 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.156 4.156 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.242 0.758 31 H 0.240 0.760 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.014 -25.737 -4.342 27.027 hybrid contribution 0.415 1.503 -0.675 1.699 sum -6.599 -24.234 -5.016 25.613 Atomic orbital electron populations 1.22225 0.94757 1.02580 1.02033 1.20921 0.93506 0.79624 0.96123 1.45353 1.55295 1.11862 1.25984 1.16140 0.80184 0.80961 0.82741 1.90860 1.43622 1.77194 1.39028 1.45291 1.55367 1.10000 1.28376 1.19658 0.98497 0.84277 0.89322 1.19499 0.96497 0.96195 1.05961 1.20866 0.94074 0.94556 0.96653 1.20446 1.01485 0.93949 1.06469 1.19986 0.92709 0.86051 0.94098 1.83950 1.47641 1.21177 1.60748 1.21870 1.02480 0.97944 1.26553 0.87905 1.26588 0.97058 0.98974 0.99410 1.70185 1.16712 1.23987 1.44793 0.84528 0.78123 0.76783 0.76786 1.17409 1.19497 1.19333 1.21239 0.96511 0.99878 1.08619 1.20928 0.99129 0.91210 0.95067 1.22478 0.99321 0.97108 0.97002 1.22411 0.99379 0.97448 0.96866 1.22507 0.97173 1.00433 0.95765 1.22672 0.98324 0.99352 0.95248 0.92503 0.90566 0.93185 0.75776 0.75953 0.91663 0.91469 0.83651 0.86681 0.91801 0.86201 0.84433 0.93715 0.92369 0.90539 0.91782 0.89741 0.91659 0.88753 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.07 71.98 0.58 -2.26 16 2 C 0.18 2.98 0.94 4.32 0.00 2.98 16 3 N -0.73 -12.77 5.07 -434.71 -2.21 -14.97 16 4 C 0.70 17.07 7.70 179.06 1.38 18.44 16 5 O -0.63 -19.90 13.53 -4.00 -0.05 -19.95 16 6 N -0.73 -16.35 5.55 -482.28 -2.68 -19.03 16 7 C 0.21 5.17 5.80 85.63 0.50 5.67 16 8 C -0.18 -5.24 5.25 -19.84 -0.10 -5.34 16 9 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 10 C -0.20 -8.22 9.99 22.39 0.22 -8.00 16 11 C 0.12 5.84 6.65 22.58 0.15 5.99 16 12 O -0.23 -13.40 9.76 -22.77 -0.22 -13.62 16 13 C -0.41 -23.39 9.49 67.92 0.64 -22.74 16 14 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 15 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 16 N -0.92 -55.44 13.67 21.61 0.30 -55.14 16 17 Si 1.02 41.93 29.55 68.60 2.03 43.95 16 18 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.24 -10.02 9.17 22.39 0.21 -9.82 16 22 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 23 C -0.12 -2.21 5.33 31.35 0.17 -2.04 16 24 C -0.12 -1.55 6.83 31.70 0.22 -1.33 16 25 C -0.12 -1.17 6.91 31.89 0.22 -0.95 16 26 C -0.12 -1.16 6.01 31.67 0.19 -0.97 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.25 6.13 -2.38 -0.01 1.24 16 30 H 0.41 5.03 8.26 -92.71 -0.77 4.27 16 31 H 0.41 7.69 8.48 -92.71 -0.79 6.91 16 32 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.04 1.05 7.30 -2.39 -0.02 1.03 16 40 H 0.06 1.19 7.67 -2.39 -0.02 1.17 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.73 7.86 -2.39 -0.02 0.72 16 46 H 0.08 0.66 7.73 -2.39 -0.02 0.64 16 Total: -1.00 -72.27 373.24 1.89 -70.38 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.55 Total: 31.90 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 5.27 Total: -23.52 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -4.59 Total: -89.14 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.28 Total: -33.57 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -72.27 1.89 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728755495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.469 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds