Wall clock time and date at job start Tue Mar 31 2020 12:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47105 * 240.00228 * 3 2 1 5 5 H 1.48502 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47306 * 120.00409 * 3 2 1 7 7 C 1.37875 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00073 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00047 * 269.99964 * 10 9 7 12 12 C 1.52998 * 109.46831 * 269.99784 * 11 10 9 13 13 C 1.53004 * 117.49457 * 243.62095 * 12 11 10 14 14 C 1.52996 * 59.99865 * 252.51133 * 13 12 11 15 15 C 1.34776 * 119.99501 * 89.99372 * 10 9 7 16 16 O 1.21278 * 120.00497 * 0.02562 * 15 10 9 17 17 C 1.50707 * 119.99636 * 179.97438 * 15 10 9 18 18 C 1.52999 * 109.46862 * 180.02562 * 17 15 10 19 19 C 1.52999 * 109.46816 * 180.02562 * 18 17 15 20 20 N 1.46507 * 109.47241 * 180.02562 * 19 18 17 21 21 C 1.35763 * 119.62574 * 90.00014 * 20 19 18 22 22 C 1.35346 * 120.69997 * 180.27933 * 21 20 19 23 23 C 1.40202 * 119.94860 * 359.43664 * 22 21 20 24 24 C 1.36395 * 119.26120 * 0.57668 * 23 22 21 25 25 C 1.34664 * 119.61981 * 270.02413 * 20 19 18 26 26 O 1.22055 * 119.98569 * 359.97438 * 25 20 19 27 27 H 0.97005 * 119.99267 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47205 * 59.99369 * 9 7 2 29 29 H 1.09004 * 109.46833 * 299.99769 * 9 7 2 30 30 H 1.08991 * 109.47021 * 30.00234 * 11 10 9 31 31 H 1.09002 * 109.46744 * 149.99826 * 11 10 9 32 32 H 1.08995 * 115.55243 * 29.33003 * 12 11 10 33 33 H 1.08995 * 117.50329 * 0.02562 * 13 12 11 34 34 H 1.09010 * 117.49234 * 145.02340 * 13 12 11 35 35 H 1.08994 * 117.50212 * 252.51078 * 14 13 12 36 36 H 1.09006 * 117.49746 * 107.49489 * 14 13 12 37 37 H 1.08998 * 109.46925 * 60.00402 * 17 15 10 38 38 H 1.09001 * 109.47148 * 300.00322 * 17 15 10 39 39 H 1.09004 * 109.46770 * 60.00629 * 18 17 15 40 40 H 1.08991 * 109.47766 * 300.00411 * 18 17 15 41 41 H 1.08991 * 109.47264 * 60.00501 * 19 18 17 42 42 H 1.09001 * 109.47142 * 300.00136 * 19 18 17 43 43 H 1.08002 * 119.64669 * 359.97438 * 21 20 19 44 44 H 1.07996 * 120.02410 * 179.69320 * 22 21 20 45 45 H 1.08002 * 120.36615 * 180.31976 * 23 22 21 46 46 H 1.08002 * 120.34395 * 179.74309 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6789 -4.1695 -1.2682 12 6 1.7481 -5.3007 -1.7098 13 6 2.3402 -6.7088 -1.7980 14 6 2.0085 -5.9368 -3.0766 15 6 2.6408 -4.1248 1.1678 16 8 2.2465 -3.6641 2.2181 17 6 3.6197 -5.2707 1.1678 18 6 3.9507 -5.6585 2.6104 19 6 4.9449 -6.8215 2.6104 20 7 5.2615 -7.1933 3.9917 21 6 4.5095 -8.1305 4.6236 22 6 4.7792 -8.4864 5.9012 23 6 5.8522 -7.8934 6.5814 24 6 6.6063 -6.9517 5.9450 25 6 6.2949 -6.6012 4.6202 26 8 6.9617 -5.7603 4.0387 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.6867 -3.3879 -2.0278 31 1 3.6884 -4.5595 -1.1378 32 1 0.7113 -5.2097 -1.3863 33 1 3.3925 -6.8294 -1.5412 34 1 1.6926 -7.5445 -1.5324 35 1 1.1430 -6.2646 -3.6523 36 1 2.8429 -5.5494 -3.6614 37 1 4.5322 -4.9690 0.6538 38 1 3.1788 -6.1251 0.6542 39 1 3.0379 -5.9604 3.1240 40 1 4.3913 -4.8044 3.1243 41 1 5.8576 -6.5193 2.0969 42 1 4.5047 -7.6759 2.0963 43 1 3.6844 -8.5934 4.1028 44 1 4.1708 -9.2296 6.3950 45 1 6.0766 -8.1761 7.5993 46 1 7.4343 -6.4806 6.4538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735045120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:03 Heat of formation + Delta-G solvation = -42.002672 kcal Electronic energy + Delta-G solvation = -26381.559994 eV Core-core repulsion = 22657.392990 eV Total energy + Delta-G solvation = -3724.167004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27986 -40.84376 -38.36869 -37.94561 -36.60322 -36.05078 -34.63535 -33.70368 -30.78416 -30.12380 -28.44976 -27.42647 -25.39663 -24.62609 -23.78470 -23.14142 -22.47944 -21.78573 -19.93834 -18.68408 -18.57697 -18.24946 -17.85082 -17.29790 -17.09468 -16.77803 -16.57498 -16.15509 -15.89182 -15.49723 -15.38355 -15.02944 -14.67829 -14.41082 -14.28985 -13.89275 -13.70265 -13.36074 -13.26477 -13.08457 -12.90491 -12.84624 -12.68276 -12.57735 -12.54581 -12.43291 -12.24391 -12.20657 -11.84785 -11.74968 -11.21590 -11.06576 -10.96607 -10.87129 -10.67506 -10.51728 -9.45196 -8.92957 -8.25866 -6.40710 -0.03371 0.96289 1.32453 1.37002 1.44185 1.69982 1.83484 2.27444 2.42279 2.72986 3.00818 3.03341 3.57978 3.68724 3.80391 3.92861 3.97830 4.01220 4.09135 4.14872 4.17698 4.30713 4.31944 4.36481 4.45034 4.53467 4.59103 4.62845 4.78894 4.86076 4.89932 4.98631 5.03510 5.11570 5.12361 5.19290 5.20977 5.25831 5.37067 5.38689 5.43125 5.53915 5.71831 5.83410 6.03755 6.15043 6.66708 6.79549 7.03211 7.25379 7.48377 8.80938 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003271 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.549816 B = 8558.688037 C =10214.914805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.265 3.735 10 N -0.600 5.600 11 C 0.141 3.859 12 C -0.194 4.194 13 C -0.158 4.158 14 C -0.167 4.167 15 C 0.494 3.506 16 O -0.603 6.603 17 C -0.119 4.119 18 C -0.108 4.108 19 C 0.095 3.905 20 N -0.494 5.494 21 C 0.133 3.867 22 C -0.236 4.236 23 C 0.006 3.994 24 C -0.290 4.290 25 C 0.488 3.512 26 O -0.615 6.615 27 H 0.268 0.732 28 H 0.021 0.979 29 H -0.005 1.005 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.205 0.795 44 H 0.183 0.817 45 H 0.166 0.834 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -26.013 2.791 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.068 0.932 9 C 0.143 3.857 10 N -0.329 5.329 11 C 0.018 3.982 12 C -0.213 4.213 13 C -0.195 4.195 14 C -0.205 4.205 15 C 0.284 3.716 16 O -0.485 6.485 17 C -0.158 4.158 18 C -0.146 4.146 19 C -0.026 4.026 20 N -0.203 5.203 21 C 0.006 3.994 22 C -0.258 4.258 23 C -0.016 4.016 24 C -0.312 4.312 25 C 0.294 3.706 26 O -0.503 6.503 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.013 0.987 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.164 0.836 43 H 0.222 0.778 44 H 0.200 0.800 45 H 0.183 0.817 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.366 -25.116 2.885 26.629 hybrid contribution -0.030 1.880 0.217 1.893 sum 8.336 -23.235 3.102 24.879 Atomic orbital electron populations 1.70043 1.07475 1.28224 1.50923 1.25838 0.95824 1.02967 0.94394 0.85514 0.78394 0.78272 0.78925 1.18351 1.19973 1.20691 1.21701 0.93172 0.92236 1.51376 0.93178 1.18649 0.87960 0.83750 0.95338 1.48183 1.44747 1.33569 1.06445 1.21249 0.97341 0.95029 0.84555 1.22613 0.99715 0.95488 1.03523 1.23231 1.02751 0.92909 1.00597 1.23007 1.03972 1.03281 0.90219 1.21450 0.82447 0.84846 0.82888 1.90640 1.60732 1.64039 1.33118 1.21593 0.98727 0.97011 0.98517 1.21500 0.99188 0.97659 0.96303 1.22145 1.00303 0.99681 0.80435 1.45630 1.26179 1.33161 1.15306 1.22846 0.94174 0.87659 0.94707 1.21210 1.02581 1.07510 0.94498 1.21876 0.90235 0.88939 1.00522 1.22119 1.07468 1.06994 0.94579 1.17693 0.80959 0.82706 0.89290 1.90923 1.53396 1.36574 1.69421 0.92343 0.96115 0.98722 0.91395 0.87988 0.90217 0.86394 0.87695 0.88386 0.87663 0.87449 0.84706 0.90974 0.95364 0.89325 0.83558 0.77799 0.79991 0.81669 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.96 46.63 29.54 68.60 2.03 48.66 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.55 -32.75 9.39 25.60 0.24 -32.51 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.26 14.72 5.16 85.63 0.44 15.17 16 10 N -0.60 -25.80 2.46 -826.15 -2.03 -27.82 16 11 C 0.14 4.34 5.49 86.38 0.47 4.82 16 12 C -0.19 -4.83 5.95 -10.79 -0.06 -4.89 16 13 C -0.16 -2.42 9.18 30.59 0.28 -2.14 16 14 C -0.17 -3.02 10.25 30.59 0.31 -2.71 16 15 C 0.49 20.81 7.67 87.66 0.67 21.49 16 16 O -0.60 -32.48 15.56 -3.02 -0.05 -32.53 16 17 C -0.12 -3.11 4.25 29.85 0.13 -2.98 16 18 C -0.11 -2.89 4.83 30.59 0.15 -2.75 16 19 C 0.10 1.74 5.33 86.38 0.46 2.20 16 20 N -0.49 -10.12 2.58 -650.97 -1.68 -11.80 16 21 C 0.13 1.51 10.28 83.42 0.86 2.37 16 22 C -0.24 -2.25 10.01 22.08 0.22 -2.03 16 23 C 0.01 0.08 10.10 22.32 0.23 0.31 16 24 C -0.29 -6.53 9.99 22.40 0.22 -6.30 16 25 C 0.49 14.17 7.41 84.82 0.63 14.80 16 26 O -0.61 -24.09 16.64 -5.49 -0.09 -24.18 16 27 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 28 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 29 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.30 16 31 H 0.10 2.40 6.17 -2.39 -0.01 2.39 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.12 1.27 7.87 -2.39 -0.02 1.25 16 34 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.11 2.49 7.40 -2.39 -0.02 2.47 16 38 H 0.14 2.36 6.84 -2.39 -0.02 2.34 16 39 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 40 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 41 H 0.09 1.90 7.39 -2.39 -0.02 1.88 16 42 H 0.15 1.07 8.01 -2.39 -0.02 1.05 16 43 H 0.21 0.48 8.04 -2.91 -0.02 0.46 16 44 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 45 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -93.15 386.48 5.13 -88.02 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.96 Total: 11.10 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.71 Total: 5.83 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -3.43 Total: -96.89 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.14 Total: -56.71 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -93.15 5.13 -88.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735045120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.020 kcal (2) G-P(sol) polarization free energy of solvation -93.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds