Wall clock time and date at job start Tue Mar 31 2020 12:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47385 * 270.00471 * 3 2 1 5 5 H 1.48503 * 109.47203 * 29.99981 * 3 2 1 6 6 H 1.48493 * 109.47291 * 149.99997 * 3 2 1 7 7 C 1.38949 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 202.95829 * 7 2 1 9 9 N 1.37096 * 120.00194 * 22.95479 * 7 2 1 10 10 C 1.34773 * 120.00207 * 53.91632 * 9 7 2 11 11 O 1.21287 * 120.00301 * 179.97438 * 10 9 7 12 12 C 1.50703 * 119.99685 * 0.02562 * 10 9 7 13 13 C 1.53005 * 109.46860 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46976 * 179.97438 * 13 12 10 15 15 N 1.46493 * 109.46956 * 179.97438 * 14 13 12 16 16 C 1.35767 * 119.62263 * 90.00463 * 15 14 13 17 17 C 1.35352 * 120.69833 * 180.27807 * 16 15 14 18 18 C 1.40192 * 119.94864 * 359.42404 * 17 16 15 19 19 C 1.36402 * 119.26514 * 0.58735 * 18 17 16 20 20 C 1.34652 * 119.62583 * 270.01618 * 15 14 13 21 21 O 1.22063 * 119.98806 * 0.02562 * 20 15 14 22 22 C 1.46501 * 120.00120 * 233.92042 * 9 7 2 23 23 C 1.54271 * 110.03171 * 59.38248 * 22 9 7 24 24 C 1.54959 * 104.16068 * 217.13676 * 23 22 9 25 25 C 1.54889 * 102.77878 * 37.88766 * 24 23 22 26 26 C 1.53876 * 110.03114 * 302.17016 * 22 9 7 27 27 H 0.96997 * 120.00034 * 354.69838 * 1 2 3 28 28 H 1.08997 * 109.47823 * 59.99569 * 12 10 9 29 29 H 1.09001 * 109.47067 * 299.99266 * 12 10 9 30 30 H 1.08992 * 109.47259 * 59.99790 * 13 12 10 31 31 H 1.08998 * 109.47077 * 299.99137 * 13 12 10 32 32 H 1.09000 * 109.46867 * 59.99655 * 14 13 12 33 33 H 1.08998 * 109.46656 * 300.00167 * 14 13 12 34 34 H 1.07996 * 119.65148 * 359.97438 * 16 15 14 35 35 H 1.08002 * 120.02308 * 179.70044 * 17 16 15 36 36 H 1.08000 * 120.36797 * 180.32193 * 18 17 16 37 37 H 1.08005 * 120.34358 * 179.73375 * 19 18 17 38 38 H 1.09001 * 110.01816 * 180.77507 * 22 9 7 39 39 H 1.08994 * 110.48603 * 335.78296 * 23 22 9 40 40 H 1.09007 * 110.48473 * 98.43105 * 23 22 9 41 41 H 1.09000 * 110.72446 * 279.58008 * 24 23 22 42 42 H 1.08998 * 110.92638 * 156.29924 * 24 23 22 43 43 H 1.08998 * 110.49408 * 203.40468 * 25 24 23 44 44 H 1.09007 * 110.59791 * 80.81697 * 25 24 23 45 45 H 1.09003 * 110.02524 * 238.56856 * 26 22 9 46 46 H 1.08997 * 110.03552 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0247 -1.2405 0.3643 9 7 1.4049 -2.3434 -0.4641 10 6 0.8548 -2.3622 -1.6943 11 8 0.3208 -3.3709 -2.1046 12 6 0.9042 -1.1300 -2.5606 13 6 0.2143 -1.4173 -3.8957 14 6 0.2639 -0.1661 -4.7750 15 7 -0.3961 -0.4414 -6.0536 16 6 -1.7270 -0.2079 -6.1857 17 6 -2.3599 -0.4597 -7.3554 18 6 -1.6373 -0.9556 -8.4495 19 6 -0.3003 -1.1900 -8.3147 20 6 0.3241 -0.9233 -7.0842 21 8 1.5198 -1.1287 -6.9498 22 6 1.3572 -3.5414 0.3779 23 6 0.6152 -3.2327 1.6947 24 6 1.3864 -4.0466 2.7642 25 6 2.8591 -3.9066 2.3053 26 6 2.7833 -3.9700 0.7658 27 1 -0.4850 0.8364 0.0776 28 1 1.9431 -0.8539 -2.7408 29 1 0.3927 -0.3103 -2.0560 30 1 -0.8246 -1.6936 -3.7158 31 1 0.7262 -2.2368 -4.4002 32 1 1.3028 0.1106 -4.9549 33 1 -0.2481 0.6531 -4.2703 34 1 -2.2875 0.1783 -5.3473 35 1 -3.4200 -0.2744 -7.4469 36 1 -2.1344 -1.1540 -9.3875 37 1 0.2725 -1.5760 -9.1450 38 1 0.8554 -4.3506 -0.1527 39 1 0.6630 -2.1671 1.9187 40 1 -0.4213 -3.5649 1.6354 41 1 1.0758 -5.0913 2.7520 42 1 1.2481 -3.6157 3.7558 43 1 3.4592 -4.7302 2.6919 44 1 3.2720 -2.9507 2.6278 45 1 2.9731 -4.9876 0.4242 46 1 3.5108 -3.2870 0.3273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737637799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:06 Heat of formation + Delta-G solvation = -47.058381 kcal Electronic energy + Delta-G solvation = -27179.176767 eV Core-core repulsion = 23454.790531 eV Total energy + Delta-G solvation = -3724.386236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20491 -38.97257 -36.83956 -36.73830 -35.18374 -34.13614 -32.21674 -31.35503 -29.80002 -27.93896 -27.66100 -26.35712 -24.72902 -23.83357 -22.90868 -21.38815 -19.98636 -19.34667 -19.32510 -17.52925 -17.21452 -16.47507 -16.15222 -15.77653 -15.46850 -15.22479 -14.73029 -14.57842 -14.52062 -14.23988 -14.06503 -13.41465 -13.12064 -12.66012 -12.63585 -12.45648 -12.16923 -12.00450 -11.74592 -11.62292 -11.47755 -11.33194 -10.99897 -10.85842 -10.68266 -10.59286 -10.46935 -10.42837 -10.34321 -10.12756 -9.97536 -9.95961 -9.77599 -9.63059 -8.82716 -8.28500 -7.90966 -7.26942 -6.46738 -4.24746 0.87046 1.91972 2.76997 3.05528 3.15750 3.18113 3.73374 3.99182 4.16270 4.59525 4.70107 4.77751 4.80304 4.91779 5.20584 5.25114 5.36766 5.37814 5.39651 5.42374 5.60930 5.64763 5.92544 6.01070 6.09599 6.10674 6.19238 6.23835 6.25356 6.31588 6.34062 6.38968 6.47749 6.52250 6.56061 6.60336 6.72684 6.75217 6.84348 6.93850 7.07427 7.14745 7.20826 7.32226 7.43905 8.01442 8.16623 8.62278 8.88676 9.59992 10.04043 10.56739 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.003559 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.900461 B = 7864.737156 C = 8688.233797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.335 4.335 8 H 0.082 0.918 9 N -0.447 5.447 10 C 0.514 3.486 11 O -0.614 6.614 12 C -0.126 4.126 13 C -0.111 4.111 14 C 0.087 3.913 15 N -0.489 5.489 16 C 0.145 3.855 17 C -0.247 4.247 18 C -0.018 4.018 19 C -0.250 4.250 20 C 0.509 3.491 21 O -0.551 6.551 22 C 0.132 3.868 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.127 4.127 27 H 0.270 0.730 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 2.052 -6.479 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.152 4.152 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.463 4.463 8 H 0.100 0.900 9 N -0.167 5.167 10 C 0.305 3.695 11 O -0.501 6.501 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.034 4.034 15 N -0.198 5.198 16 C 0.016 3.984 17 C -0.270 4.270 18 C -0.040 4.040 19 C -0.272 4.272 20 C 0.311 3.689 21 O -0.433 6.433 22 C 0.028 3.972 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.166 4.166 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.581 1.559 -6.585 7.656 hybrid contribution 0.160 0.999 0.201 1.031 sum -3.421 2.558 -6.384 7.681 Atomic orbital electron populations 1.70006 1.06163 1.27986 1.44764 1.25556 0.94997 0.99838 0.94822 0.86365 0.80191 0.81922 0.78968 1.19740 1.20923 1.19206 1.19120 0.97313 0.84335 1.45541 0.90049 1.43391 1.52069 1.10243 1.10979 1.20221 0.79161 0.88195 0.81923 1.90492 1.49783 1.35341 1.74449 1.21557 1.01847 0.99916 0.93335 1.21625 1.02211 0.95769 0.95387 1.22223 1.00141 0.99819 0.81191 1.45706 1.08405 1.51568 1.14151 1.22064 0.83631 0.93590 0.99104 1.20593 1.01228 1.11902 0.93280 1.21385 0.93713 0.90625 0.98233 1.22107 0.96179 1.10806 0.98093 1.17181 0.87541 0.79656 0.84501 1.90967 1.14303 1.54462 1.83587 1.21565 0.94088 0.89901 0.91634 1.22585 0.97316 1.02042 0.93833 1.22454 0.95803 0.99384 0.98464 1.22249 0.96410 1.00745 0.95948 1.22398 0.98637 1.00114 0.95414 0.91928 0.90418 0.86968 0.91519 0.91374 0.88235 0.89099 0.82103 0.84012 0.85148 0.83795 0.90577 0.89074 0.93228 0.92620 0.92471 0.93033 0.91691 0.93027 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.76 11.69 55.50 0.65 -20.12 16 2 C 0.05 1.27 3.46 -17.47 -0.06 1.21 16 3 Si 0.90 18.18 29.61 -169.99 -5.03 13.14 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.34 -7.99 6.91 -14.93 -0.10 -8.10 16 8 H 0.08 1.93 7.17 -52.49 -0.38 1.56 16 9 N -0.45 -10.84 2.35 -106.54 -0.25 -11.09 16 10 C 0.51 12.96 7.19 -10.99 -0.08 12.88 16 11 O -0.61 -16.84 15.33 5.55 0.09 -16.76 16 12 C -0.13 -2.75 4.12 -27.88 -0.11 -2.86 16 13 C -0.11 -2.15 4.83 -26.73 -0.13 -2.27 16 14 C 0.09 1.37 5.33 -4.04 -0.02 1.35 16 15 N -0.49 -7.20 2.58 -119.78 -0.31 -7.51 16 16 C 0.15 1.61 10.28 -16.84 -0.17 1.44 16 17 C -0.25 -2.34 10.01 -39.88 -0.40 -2.74 16 18 C -0.02 -0.18 10.10 -39.51 -0.40 -0.58 16 19 C -0.25 -3.29 9.99 -39.38 -0.39 -3.68 16 20 C 0.51 8.54 7.41 -15.45 -0.11 8.43 16 21 O -0.55 -11.43 16.64 4.86 0.08 -11.35 16 22 C 0.13 2.92 3.29 -66.81 -0.22 2.70 16 23 C -0.12 -2.45 6.42 -25.03 -0.16 -2.61 16 24 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 25 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 26 C -0.13 -2.41 6.25 -25.61 -0.16 -2.57 16 27 H 0.27 6.22 8.32 -40.82 -0.34 5.88 16 28 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 29 H 0.11 2.50 5.09 -51.93 -0.26 2.24 16 30 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 31 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 32 H 0.10 1.67 7.39 -51.93 -0.38 1.29 16 33 H 0.09 1.20 8.01 -51.93 -0.42 0.78 16 34 H 0.16 1.35 8.04 -52.49 -0.42 0.93 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.08 1.80 6.94 -51.93 -0.36 1.44 16 39 H 0.09 2.10 7.09 -51.93 -0.37 1.73 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.42 6.83 -51.93 -0.35 1.07 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -30.71 371.08 -9.21 -39.91 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.15 Total: 9.85 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.87 Total: -1.67 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.09 Total: -38.72 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: 0.17 Total: -28.11 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.71 -9.21 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737637799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.145 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds