Wall clock time and date at job start Tue Mar 31 2020 12:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47385 * 270.00471 * 3 2 1 5 5 H 1.48503 * 109.47203 * 29.99981 * 3 2 1 6 6 H 1.48493 * 109.47291 * 149.99997 * 3 2 1 7 7 C 1.38949 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 202.95829 * 7 2 1 9 9 N 1.37096 * 120.00194 * 22.95479 * 7 2 1 10 10 C 1.34773 * 120.00207 * 53.91632 * 9 7 2 11 11 O 1.21287 * 120.00301 * 179.97438 * 10 9 7 12 12 C 1.50703 * 119.99685 * 0.02562 * 10 9 7 13 13 C 1.53005 * 109.46860 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46976 * 179.97438 * 13 12 10 15 15 N 1.46493 * 109.46956 * 179.97438 * 14 13 12 16 16 C 1.35767 * 119.62263 * 90.00463 * 15 14 13 17 17 C 1.35352 * 120.69833 * 180.27807 * 16 15 14 18 18 C 1.40192 * 119.94864 * 359.42404 * 17 16 15 19 19 C 1.36402 * 119.26514 * 0.58735 * 18 17 16 20 20 C 1.34652 * 119.62583 * 270.01618 * 15 14 13 21 21 O 1.22063 * 119.98806 * 0.02562 * 20 15 14 22 22 C 1.46501 * 120.00120 * 233.92042 * 9 7 2 23 23 C 1.54271 * 110.03171 * 59.38248 * 22 9 7 24 24 C 1.54959 * 104.16068 * 217.13676 * 23 22 9 25 25 C 1.54889 * 102.77878 * 37.88766 * 24 23 22 26 26 C 1.53876 * 110.03114 * 302.17016 * 22 9 7 27 27 H 0.96997 * 120.00034 * 354.69838 * 1 2 3 28 28 H 1.08997 * 109.47823 * 59.99569 * 12 10 9 29 29 H 1.09001 * 109.47067 * 299.99266 * 12 10 9 30 30 H 1.08992 * 109.47259 * 59.99790 * 13 12 10 31 31 H 1.08998 * 109.47077 * 299.99137 * 13 12 10 32 32 H 1.09000 * 109.46867 * 59.99655 * 14 13 12 33 33 H 1.08998 * 109.46656 * 300.00167 * 14 13 12 34 34 H 1.07996 * 119.65148 * 359.97438 * 16 15 14 35 35 H 1.08002 * 120.02308 * 179.70044 * 17 16 15 36 36 H 1.08000 * 120.36797 * 180.32193 * 18 17 16 37 37 H 1.08005 * 120.34358 * 179.73375 * 19 18 17 38 38 H 1.09001 * 110.01816 * 180.77507 * 22 9 7 39 39 H 1.08994 * 110.48603 * 335.78296 * 23 22 9 40 40 H 1.09007 * 110.48473 * 98.43105 * 23 22 9 41 41 H 1.09000 * 110.72446 * 279.58008 * 24 23 22 42 42 H 1.08998 * 110.92638 * 156.29924 * 24 23 22 43 43 H 1.08998 * 110.49408 * 203.40468 * 25 24 23 44 44 H 1.09007 * 110.59791 * 80.81697 * 25 24 23 45 45 H 1.09003 * 110.02524 * 238.56856 * 26 22 9 46 46 H 1.08997 * 110.03552 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0247 -1.2405 0.3643 9 7 1.4049 -2.3434 -0.4641 10 6 0.8548 -2.3622 -1.6943 11 8 0.3208 -3.3709 -2.1046 12 6 0.9042 -1.1300 -2.5606 13 6 0.2143 -1.4173 -3.8957 14 6 0.2639 -0.1661 -4.7750 15 7 -0.3961 -0.4414 -6.0536 16 6 -1.7270 -0.2079 -6.1857 17 6 -2.3599 -0.4597 -7.3554 18 6 -1.6373 -0.9556 -8.4495 19 6 -0.3003 -1.1900 -8.3147 20 6 0.3241 -0.9233 -7.0842 21 8 1.5198 -1.1287 -6.9498 22 6 1.3572 -3.5414 0.3779 23 6 0.6152 -3.2327 1.6947 24 6 1.3864 -4.0466 2.7642 25 6 2.8591 -3.9066 2.3053 26 6 2.7833 -3.9700 0.7658 27 1 -0.4850 0.8364 0.0776 28 1 1.9431 -0.8539 -2.7408 29 1 0.3927 -0.3103 -2.0560 30 1 -0.8246 -1.6936 -3.7158 31 1 0.7262 -2.2368 -4.4002 32 1 1.3028 0.1106 -4.9549 33 1 -0.2481 0.6531 -4.2703 34 1 -2.2875 0.1783 -5.3473 35 1 -3.4200 -0.2744 -7.4469 36 1 -2.1344 -1.1540 -9.3875 37 1 0.2725 -1.5760 -9.1450 38 1 0.8554 -4.3506 -0.1527 39 1 0.6630 -2.1671 1.9187 40 1 -0.4213 -3.5649 1.6354 41 1 1.0758 -5.0913 2.7520 42 1 1.2481 -3.6157 3.7558 43 1 3.4592 -4.7302 2.6919 44 1 3.2720 -2.9507 2.6278 45 1 2.9731 -4.9876 0.4242 46 1 3.5108 -3.2870 0.3273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737637799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:06 Heat of formation + Delta-G solvation = -63.531350 kcal Electronic energy + Delta-G solvation = -27179.891088 eV Core-core repulsion = 23454.790531 eV Total energy + Delta-G solvation = -3725.100557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31153 -40.81401 -38.49887 -37.96267 -36.41871 -35.97919 -33.68557 -33.14381 -30.79688 -29.48423 -29.21773 -27.88570 -26.52280 -24.88413 -24.16783 -22.73911 -21.43305 -21.17842 -21.03835 -18.79204 -18.29721 -18.09496 -17.49812 -17.23665 -17.12218 -16.60714 -16.38496 -16.14345 -15.90429 -15.56947 -15.17236 -14.94187 -14.78927 -14.32753 -14.16236 -13.82307 -13.48033 -13.33234 -13.12858 -13.10771 -12.87472 -12.74451 -12.60250 -12.49117 -12.29345 -12.24051 -12.05861 -11.89548 -11.83588 -11.80934 -11.39612 -11.34303 -11.07555 -10.99247 -10.67948 -10.23104 -9.16515 -8.96259 -8.29949 -6.15129 -0.05697 0.93076 1.43674 1.51019 1.57441 1.66212 2.14910 2.34208 2.69386 2.96100 3.02532 3.63682 3.79309 3.85236 3.89435 3.94569 3.99627 4.11428 4.19518 4.22052 4.29950 4.43190 4.52207 4.58750 4.61413 4.65372 4.73970 4.77969 4.81583 4.90561 4.97673 5.06184 5.09934 5.14560 5.15751 5.20671 5.22976 5.31890 5.38752 5.42327 5.49344 5.57243 5.64921 5.68614 6.13695 6.16198 6.72156 7.00158 7.01861 7.66521 8.13375 8.74838 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.003559 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.900461 B = 7864.737156 C = 8688.233797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.352 4.352 8 H 0.081 0.919 9 N -0.448 5.448 10 C 0.490 3.510 11 O -0.650 6.650 12 C -0.116 4.116 13 C -0.094 4.094 14 C 0.097 3.903 15 N -0.493 5.493 16 C 0.124 3.876 17 C -0.229 4.229 18 C 0.009 3.991 19 C -0.282 4.282 20 C 0.487 3.513 21 O -0.615 6.615 22 C 0.118 3.882 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.122 4.122 27 H 0.276 0.724 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.147 0.853 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 3.264 -6.264 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.099 0.901 9 N -0.167 5.167 10 C 0.281 3.719 11 O -0.539 6.539 12 C -0.156 4.156 13 C -0.133 4.133 14 C -0.024 4.024 15 N -0.201 5.201 16 C -0.003 4.003 17 C -0.251 4.251 18 C -0.013 4.013 19 C -0.304 4.304 20 C 0.292 3.708 21 O -0.504 6.504 22 C 0.014 3.986 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.161 4.161 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.208 0.792 35 H 0.203 0.797 36 H 0.191 0.809 37 H 0.165 0.835 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.048 2.783 -6.352 8.578 hybrid contribution 0.438 0.593 0.130 0.749 sum -4.610 3.375 -6.222 8.447 Atomic orbital electron populations 1.70077 1.07436 1.29062 1.44720 1.26123 0.95469 1.02105 0.93747 0.85484 0.78993 0.78214 0.79209 1.18992 1.20508 1.19032 1.19262 0.97496 0.84766 1.46425 0.90139 1.43602 1.51096 1.11045 1.10911 1.20893 0.79436 0.88892 0.82641 1.90447 1.51585 1.36688 1.75191 1.21459 1.01972 0.98284 0.93859 1.21400 1.00823 0.96566 0.94541 1.22004 1.00280 0.98577 0.81579 1.45643 1.09859 1.51590 1.13047 1.22768 0.82104 0.94134 1.01256 1.21210 1.03019 1.08890 0.91944 1.21898 0.92176 0.87212 1.00026 1.22133 0.97956 1.13424 0.96885 1.17833 0.87230 0.79733 0.85982 1.90913 1.16825 1.57909 1.84716 1.21806 0.96317 0.88632 0.91826 1.22463 0.97257 1.00989 0.94560 1.22422 0.94930 0.99767 0.97809 1.22218 0.96803 1.01957 0.93487 1.22344 0.95815 1.00237 0.97690 0.91414 0.90543 0.87040 0.92064 0.94735 0.89819 0.85896 0.79159 0.79744 0.80874 0.83496 0.93103 0.91793 0.94304 0.90774 0.90479 0.89710 0.92049 0.91776 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.86 11.69 21.66 0.25 -42.61 16 2 C 0.03 1.44 3.46 84.93 0.29 1.73 16 3 Si 0.96 36.73 29.61 68.60 2.03 38.76 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.35 -17.12 6.91 84.04 0.58 -16.54 16 8 H 0.08 3.88 7.17 -2.91 -0.02 3.86 16 9 N -0.45 -22.57 2.35 -609.38 -1.43 -24.00 16 10 C 0.49 25.92 7.19 87.66 0.63 26.55 16 11 O -0.65 -37.70 15.33 -3.05 -0.05 -37.75 16 12 C -0.12 -5.23 4.12 29.85 0.12 -5.11 16 13 C -0.09 -3.82 4.83 30.60 0.15 -3.68 16 14 C 0.10 3.12 5.33 86.38 0.46 3.58 16 15 N -0.49 -14.53 2.58 -650.99 -1.68 -16.21 16 16 C 0.12 2.45 10.28 83.42 0.86 3.31 16 17 C -0.23 -3.38 10.01 22.08 0.22 -3.16 16 18 C 0.01 0.14 10.10 22.32 0.23 0.37 16 19 C -0.28 -7.34 9.99 22.40 0.22 -7.11 16 20 C 0.49 17.00 7.41 84.82 0.63 17.63 16 21 O -0.62 -27.60 16.64 -5.52 -0.09 -27.69 16 22 C 0.12 5.37 3.29 45.72 0.15 5.52 16 23 C -0.11 -4.74 6.42 31.69 0.20 -4.54 16 24 C -0.11 -3.47 6.91 31.91 0.22 -3.25 16 25 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 26 C -0.12 -4.62 6.25 31.32 0.20 -4.43 16 27 H 0.28 12.57 8.32 -92.71 -0.77 11.80 16 28 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 29 H 0.11 5.06 5.09 -2.39 -0.01 5.05 16 30 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 31 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.08 2.96 7.39 -2.39 -0.02 2.95 16 33 H 0.12 3.11 8.01 -2.39 -0.02 3.09 16 34 H 0.19 2.53 8.04 -2.91 -0.02 2.50 16 35 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.05 2.53 6.94 -2.39 -0.02 2.51 16 39 H 0.06 3.00 7.09 -2.39 -0.02 2.99 16 40 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.06 2.28 6.83 -2.39 -0.02 2.26 16 Total: -1.00 -72.89 371.08 5.37 -67.52 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.96 Total: 34.17 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.38 Total: 7.80 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.86 Total: -82.82 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: -0.14 Total: -65.43 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -72.89 5.37 -67.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737637799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.992 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds