Wall clock time and date at job start Tue Mar 31 2020 12:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99908 * 2 1 4 4 C 1.38220 * 120.00044 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99681 * 0.09566 * 4 3 2 6 6 C 1.38207 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00262 * 180.13514 * 2 1 3 8 8 C 1.50707 * 119.99812 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.50638 * 325.02474 * 8 7 2 10 10 C 1.53096 * 109.50282 * 85.10965 * 8 7 2 11 11 N 1.47029 * 109.25351 * 176.73836 * 10 8 7 12 12 C 1.46896 * 110.99764 * 177.64873 * 11 10 8 13 13 C 1.50697 * 109.47303 * 189.72384 * 12 11 10 14 14 O 1.21286 * 119.99876 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00518 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00609 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47283 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99844 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46833 * 90.00269 * 21 19 17 23 23 H 1.48506 * 109.47045 * 209.99682 * 21 19 17 24 24 H 1.48494 * 109.47197 * 329.99705 * 21 19 17 25 25 C 1.47017 * 110.78750 * 301.45317 * 11 10 8 26 26 C 1.53090 * 109.25849 * 58.59036 * 25 11 10 27 27 O 1.43015 * 109.26218 * 303.14857 * 26 25 11 28 28 H 1.08999 * 109.47419 * 269.86886 * 1 2 3 29 29 H 1.09000 * 109.47219 * 29.86553 * 1 2 3 30 30 H 1.08996 * 109.46919 * 149.86215 * 1 2 3 31 31 H 1.08002 * 120.00345 * 0.06445 * 3 2 1 32 32 H 1.08000 * 119.99660 * 180.36499 * 4 3 2 33 33 H 1.08000 * 119.99309 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.00400 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.51164 * 296.71521 * 10 8 7 36 36 H 1.09000 * 109.50896 * 56.85431 * 10 8 7 37 37 H 1.09003 * 109.47661 * 309.72883 * 12 11 10 38 38 H 1.09004 * 109.47179 * 69.72805 * 12 11 10 39 39 H 0.97003 * 119.99682 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.46601 * 300.00302 * 16 15 13 41 41 H 1.08998 * 109.46735 * 59.99400 * 16 15 13 42 42 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.50635 * 298.65111 * 25 11 10 44 44 H 1.09001 * 109.53810 * 178.54906 * 25 11 10 45 45 H 1.08999 * 109.50612 * 183.21214 * 26 25 11 46 46 H 1.09006 * 109.50793 * 63.08838 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 3.5807 -1.1969 -0.0024 7 6 2.1981 -1.1968 -0.0028 8 6 1.4446 -2.5020 -0.0053 9 1 0.5338 -2.3976 0.5842 10 6 1.0819 -2.8801 -1.4439 11 7 0.4164 -4.1911 -1.4475 12 6 0.0011 -4.5668 -2.8055 13 6 -0.8796 -5.7880 -2.7417 14 8 -1.1365 -6.2951 -1.6703 15 7 -1.3819 -6.3166 -3.8751 16 6 -2.2386 -7.5034 -3.8131 17 6 -2.6635 -7.8897 -5.2064 18 1 -2.3293 -7.3089 -6.0533 19 6 -3.4799 -8.9838 -5.3997 20 7 -3.8873 -9.6908 -4.3682 21 14 -4.0072 -9.4622 -7.1267 22 1 -3.0189 -10.4099 -7.7013 23 1 -5.3424 -10.1103 -7.0749 24 1 -4.0797 -8.2467 -7.9766 25 6 1.2867 -5.2196 -0.8591 26 6 1.6463 -4.8175 0.5736 27 8 2.2647 -3.5280 0.5605 28 1 -0.3634 -0.0024 1.0276 29 1 -0.3634 0.8912 -0.5117 30 1 -0.3633 -0.8887 -0.5160 31 1 1.6583 2.1327 0.0011 32 1 4.1204 2.1327 0.0065 33 1 5.3517 0.0001 -0.0009 34 1 4.1206 -2.1322 -0.0040 35 1 0.4101 -2.1290 -1.8593 36 1 1.9888 -2.9314 -2.0464 37 1 -0.5518 -3.7433 -3.2574 38 1 0.8829 -4.7860 -3.4076 39 1 -1.1768 -5.9108 -4.7320 40 1 -1.6861 -8.3270 -3.3606 41 1 -3.1206 -7.2838 -3.2115 42 1 -4.4613 -10.4607 -4.5042 43 1 2.1972 -5.3085 -1.4517 44 1 0.7645 -6.1764 -0.8485 45 1 2.3372 -5.5482 0.9942 46 1 0.7410 -4.7809 1.1796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741802229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:41 Heat of formation + Delta-G solvation = -52.822796 kcal Electronic energy + Delta-G solvation = -26321.955109 eV Core-core repulsion = 22597.318909 eV Total energy + Delta-G solvation = -3724.636199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48193 -39.26595 -38.31931 -35.50059 -34.13864 -33.58262 -32.37316 -32.28646 -29.81218 -29.21457 -27.26491 -27.03382 -24.96572 -24.15303 -22.62742 -22.07262 -21.04538 -20.34196 -19.67636 -17.26599 -17.04182 -16.55735 -16.15511 -15.83298 -15.53243 -15.30736 -15.13436 -14.62556 -14.57309 -14.49934 -14.27310 -14.08723 -13.70168 -13.48180 -13.30226 -12.90927 -12.56669 -12.54005 -12.34567 -12.12092 -11.97243 -11.84585 -11.62238 -11.31111 -11.20920 -11.00964 -10.97487 -10.88064 -10.55787 -10.32873 -9.88563 -9.41832 -9.09732 -8.96519 -8.76636 -8.74872 -8.33020 -7.88781 -6.18657 -4.25671 1.07546 1.18967 3.22546 3.28632 3.30920 3.33392 3.40413 3.56345 3.66807 4.20471 4.38441 4.58089 4.61911 4.68709 4.83467 4.86000 4.95149 5.04955 5.05628 5.17023 5.17835 5.24774 5.36554 5.39648 5.42811 5.45202 5.49201 5.53139 5.55712 5.61989 5.72286 5.81746 5.91016 5.97433 6.02820 6.24874 6.31124 6.41549 6.77695 6.83312 6.91656 7.12066 7.29543 7.42126 7.49735 7.65080 7.95028 8.60593 8.76547 9.08857 9.41090 10.91484 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.002264 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.330066 B =12363.497285 C =12770.621865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.089 4.089 7 C -0.082 4.082 8 C 0.137 3.863 9 H 0.079 0.921 10 C 0.030 3.970 11 N -0.517 5.517 12 C 0.035 3.965 13 C 0.500 3.500 14 O -0.539 6.539 15 N -0.714 5.714 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.012 3.988 26 C 0.068 3.932 27 O -0.382 6.382 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.390 0.610 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.036 0.964 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.483 20.670 7.735 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.083 4.083 8 C 0.079 3.921 9 H 0.097 0.903 10 C -0.098 4.098 11 N -0.242 5.242 12 C -0.096 4.096 13 C 0.283 3.717 14 O -0.418 6.418 15 N -0.363 5.363 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.116 4.116 26 C -0.009 4.009 27 O -0.301 6.301 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.117 0.883 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.910 20.168 8.915 26.071 hybrid contribution 0.276 -0.264 -2.038 2.074 sum 14.185 19.903 6.877 25.390 Atomic orbital electron populations 1.20946 0.90997 1.03363 1.02835 1.19700 0.96143 0.92247 0.99259 1.20974 0.94254 0.97236 1.01684 1.21149 0.94327 0.98039 0.99945 1.21151 0.99887 0.92482 1.01329 1.21022 0.93573 0.98404 0.97679 1.19444 0.93981 0.92803 1.02042 1.20807 0.92812 0.85222 0.93220 0.90319 1.22775 0.98133 0.92060 0.96875 1.61830 1.40799 1.01820 1.19707 1.22033 0.99055 0.98302 0.90204 1.20242 0.81474 0.84951 0.84987 1.90620 1.60011 1.62362 1.28759 1.46462 1.50551 1.31786 1.07522 1.19087 0.89072 0.81331 0.97422 1.21223 1.31684 1.13197 0.92095 0.91927 1.24959 0.95619 0.95917 0.97561 1.69974 1.34295 1.18091 1.29880 0.86412 0.78056 0.78721 0.83701 1.20471 1.20985 1.19756 1.23000 0.95192 0.97817 0.95572 1.22675 0.98441 0.83926 0.95832 1.87927 1.42629 1.17467 1.82054 0.90815 0.91276 0.90773 0.85983 0.86195 0.86136 0.85347 0.89490 0.93863 0.88204 0.92284 0.77800 0.95620 0.95507 0.92432 0.94611 0.87008 0.88256 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.22 36.01 0.33 -0.67 16 2 C -0.07 -0.70 5.88 -104.63 -0.62 -1.31 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 5 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 6 C -0.09 -0.93 9.35 -39.58 -0.37 -1.30 16 7 C -0.08 -0.89 5.07 -104.62 -0.53 -1.42 16 8 C 0.14 1.60 2.32 -27.83 -0.06 1.53 16 9 H 0.08 0.94 6.99 -51.93 -0.36 0.58 16 10 C 0.03 0.35 4.75 -3.70 -0.02 0.33 16 11 N -0.52 -7.34 4.46 -235.74 -1.05 -8.39 16 12 C 0.04 0.50 5.45 -4.98 -0.03 0.47 16 13 C 0.50 9.68 7.54 -10.99 -0.08 9.60 16 14 O -0.54 -12.51 14.33 5.55 0.08 -12.43 16 15 N -0.71 -14.69 5.55 -61.47 -0.34 -15.03 16 16 C 0.25 6.58 5.43 -5.19 -0.03 6.56 16 17 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.01 0.17 5.29 -3.71 -0.02 0.15 16 26 C 0.07 0.84 7.01 37.20 0.26 1.10 16 27 O -0.38 -4.85 9.31 -35.23 -0.33 -5.18 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.63 5.41 -51.93 -0.28 0.35 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 1.35 7.35 -52.49 -0.39 0.96 16 35 H 0.09 0.91 6.81 -51.93 -0.35 0.56 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 1.21 8.04 -51.93 -0.42 0.79 16 38 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 39 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 1.88 5.86 -51.93 -0.30 1.58 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.21 371.68 -10.13 -42.34 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.05 Total: 5.17 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.76 Total: -2.58 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.66 Total: -48.61 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.25 Total: -17.61 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.21 -10.13 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741802229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds