Wall clock time and date at job start Tue Mar 31 2020 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99908 * 2 1 4 4 C 1.38220 * 120.00044 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99681 * 0.09566 * 4 3 2 6 6 C 1.38207 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00262 * 180.13514 * 2 1 3 8 8 C 1.50707 * 119.99812 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.50638 * 325.02474 * 8 7 2 10 10 C 1.53096 * 109.50282 * 85.10965 * 8 7 2 11 11 N 1.47029 * 109.25351 * 176.73836 * 10 8 7 12 12 C 1.46896 * 110.99764 * 177.64873 * 11 10 8 13 13 C 1.50697 * 109.47303 * 189.72384 * 12 11 10 14 14 O 1.21286 * 119.99876 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00518 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00609 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47283 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99844 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46833 * 90.00269 * 21 19 17 23 23 H 1.48506 * 109.47045 * 209.99682 * 21 19 17 24 24 H 1.48494 * 109.47197 * 329.99705 * 21 19 17 25 25 C 1.47017 * 110.78750 * 301.45317 * 11 10 8 26 26 C 1.53090 * 109.25849 * 58.59036 * 25 11 10 27 27 O 1.43015 * 109.26218 * 303.14857 * 26 25 11 28 28 H 1.08999 * 109.47419 * 269.86886 * 1 2 3 29 29 H 1.09000 * 109.47219 * 29.86553 * 1 2 3 30 30 H 1.08996 * 109.46919 * 149.86215 * 1 2 3 31 31 H 1.08002 * 120.00345 * 0.06445 * 3 2 1 32 32 H 1.08000 * 119.99660 * 180.36499 * 4 3 2 33 33 H 1.08000 * 119.99309 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.00400 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.51164 * 296.71521 * 10 8 7 36 36 H 1.09000 * 109.50896 * 56.85431 * 10 8 7 37 37 H 1.09003 * 109.47661 * 309.72883 * 12 11 10 38 38 H 1.09004 * 109.47179 * 69.72805 * 12 11 10 39 39 H 0.97003 * 119.99682 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.46601 * 300.00302 * 16 15 13 41 41 H 1.08998 * 109.46735 * 59.99400 * 16 15 13 42 42 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.50635 * 298.65111 * 25 11 10 44 44 H 1.09001 * 109.53810 * 178.54906 * 25 11 10 45 45 H 1.08999 * 109.50612 * 183.21214 * 26 25 11 46 46 H 1.09006 * 109.50793 * 63.08838 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 3.5807 -1.1969 -0.0024 7 6 2.1981 -1.1968 -0.0028 8 6 1.4446 -2.5020 -0.0053 9 1 0.5338 -2.3976 0.5842 10 6 1.0819 -2.8801 -1.4439 11 7 0.4164 -4.1911 -1.4475 12 6 0.0011 -4.5668 -2.8055 13 6 -0.8796 -5.7880 -2.7417 14 8 -1.1365 -6.2951 -1.6703 15 7 -1.3819 -6.3166 -3.8751 16 6 -2.2386 -7.5034 -3.8131 17 6 -2.6635 -7.8897 -5.2064 18 1 -2.3293 -7.3089 -6.0533 19 6 -3.4799 -8.9838 -5.3997 20 7 -3.8873 -9.6908 -4.3682 21 14 -4.0072 -9.4622 -7.1267 22 1 -3.0189 -10.4099 -7.7013 23 1 -5.3424 -10.1103 -7.0749 24 1 -4.0797 -8.2467 -7.9766 25 6 1.2867 -5.2196 -0.8591 26 6 1.6463 -4.8175 0.5736 27 8 2.2647 -3.5280 0.5605 28 1 -0.3634 -0.0024 1.0276 29 1 -0.3634 0.8912 -0.5117 30 1 -0.3633 -0.8887 -0.5160 31 1 1.6583 2.1327 0.0011 32 1 4.1204 2.1327 0.0065 33 1 5.3517 0.0001 -0.0009 34 1 4.1206 -2.1322 -0.0040 35 1 0.4101 -2.1290 -1.8593 36 1 1.9888 -2.9314 -2.0464 37 1 -0.5518 -3.7433 -3.2574 38 1 0.8829 -4.7860 -3.4076 39 1 -1.1768 -5.9108 -4.7320 40 1 -1.6861 -8.3270 -3.3606 41 1 -3.1206 -7.2838 -3.2115 42 1 -4.4613 -10.4607 -4.5042 43 1 2.1972 -5.3085 -1.4517 44 1 0.7645 -6.1764 -0.8485 45 1 2.3372 -5.5482 0.9942 46 1 0.7410 -4.7809 1.1796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741802229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:40 Heat of formation + Delta-G solvation = -74.994146 kcal Electronic energy + Delta-G solvation = -26322.916531 eV Core-core repulsion = 22597.318909 eV Total energy + Delta-G solvation = -3725.597621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43563 -40.49968 -39.44801 -36.70708 -35.98331 -34.36343 -34.31025 -33.04756 -30.91676 -30.38259 -28.87443 -27.81381 -26.21040 -25.13587 -24.35355 -22.99985 -21.89006 -21.31866 -21.26418 -18.97476 -17.93603 -17.68349 -17.37178 -17.16334 -16.86831 -16.67192 -16.22275 -16.07094 -15.65598 -15.50089 -15.37947 -15.20683 -14.72372 -14.55947 -14.26041 -14.12372 -13.96879 -13.89478 -13.51517 -13.29855 -13.01349 -12.92658 -12.78256 -12.71251 -12.62433 -12.41918 -12.21685 -11.99848 -11.77765 -11.49301 -11.48617 -10.96422 -10.80223 -10.55985 -9.81653 -9.68942 -9.49097 -9.41757 -8.29413 -6.45880 0.38659 0.51086 1.42909 1.45137 1.56359 1.77443 2.20857 2.41280 2.62368 2.86243 2.95576 3.05458 3.73045 3.84288 3.86430 3.96064 4.01538 4.11432 4.14006 4.14775 4.24957 4.29579 4.36846 4.43956 4.48524 4.55475 4.67590 4.75057 4.81162 4.84784 4.86159 4.92730 5.00407 5.11160 5.17516 5.24851 5.32977 5.48802 5.56821 5.64586 5.67036 5.71004 5.77747 5.85354 5.88714 6.10988 6.18174 6.65364 6.93705 7.23604 7.51690 8.82649 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.002264 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.330066 B =12363.497285 C =12770.621865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.105 4.105 7 C -0.099 4.099 8 C 0.138 3.862 9 H 0.071 0.929 10 C 0.037 3.963 11 N -0.535 5.535 12 C 0.049 3.951 13 C 0.496 3.504 14 O -0.582 6.582 15 N -0.709 5.709 16 C 0.269 3.731 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.255 1.255 25 C 0.015 3.985 26 C 0.072 3.928 27 O -0.388 6.388 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.408 0.592 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.544 23.310 5.877 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.123 4.123 7 C -0.099 4.099 8 C 0.080 3.920 9 H 0.089 0.911 10 C -0.090 4.090 11 N -0.260 5.260 12 C -0.082 4.082 13 C 0.283 3.717 14 O -0.463 6.463 15 N -0.360 5.360 16 C 0.146 3.854 17 C -0.593 4.593 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.179 1.179 25 C -0.113 4.113 26 C -0.004 4.004 27 O -0.307 6.307 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.244 0.756 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.135 0.865 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.006 22.858 7.040 28.235 hybrid contribution -0.014 -1.024 -1.357 1.700 sum 14.992 21.834 5.683 27.089 Atomic orbital electron populations 1.20956 0.90199 1.03757 1.03087 1.19907 0.96879 0.92238 0.99173 1.21297 0.94667 0.97700 1.00832 1.21500 0.94481 0.98809 0.98664 1.21403 1.00932 0.92213 1.00826 1.21080 0.93635 0.98867 0.98723 1.19447 0.94206 0.92650 1.03621 1.20832 0.92631 0.85530 0.92958 0.91107 1.22782 0.98335 0.90765 0.97125 1.61784 1.41635 1.02835 1.19750 1.21965 0.99016 0.96205 0.91011 1.21221 0.80982 0.85819 0.83674 1.90610 1.61411 1.63884 1.30370 1.46185 1.50128 1.30545 1.09157 1.18498 0.87863 0.82268 0.96738 1.21623 1.31579 1.13543 0.92569 0.89808 1.26074 0.95501 0.95796 1.02337 1.70139 1.35194 1.18801 1.32799 0.85161 0.77378 0.78875 0.77835 1.19645 1.21021 1.17883 1.22876 0.94939 0.96601 0.96848 1.22651 0.98558 0.84492 0.94737 1.87930 1.42965 1.17562 1.82210 0.90640 0.89642 0.91575 0.83806 0.83681 0.84389 0.86165 0.87916 0.93514 0.85160 0.89764 0.75649 0.99559 0.99558 0.92281 0.93833 0.90206 0.86462 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.22 71.24 0.66 -1.12 16 2 C -0.08 -1.42 5.88 -19.87 -0.12 -1.54 16 3 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 4 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 5 C -0.14 -2.15 10.05 22.27 0.22 -1.93 16 6 C -0.10 -2.09 9.35 22.27 0.21 -1.88 16 7 C -0.10 -2.02 5.07 -19.86 -0.10 -2.13 16 8 C 0.14 3.14 2.32 29.88 0.07 3.21 16 9 H 0.07 1.69 6.99 -2.39 -0.02 1.68 16 10 C 0.04 0.82 4.75 86.31 0.41 1.23 16 11 N -0.53 -14.80 4.46 -899.76 -4.02 -18.82 16 12 C 0.05 1.30 5.45 85.56 0.47 1.77 16 13 C 0.50 19.45 7.54 87.66 0.66 20.12 16 14 O -0.58 -28.27 14.33 -3.05 -0.04 -28.31 16 15 N -0.71 -29.41 5.55 -466.79 -2.59 -32.00 16 16 C 0.27 14.69 5.43 85.63 0.46 15.16 16 17 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 18 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 21 Si 0.98 42.11 29.54 68.60 2.03 44.13 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 C 0.02 0.44 5.29 86.31 0.46 0.90 16 26 C 0.07 1.82 7.01 72.01 0.50 2.32 16 27 O -0.39 -9.79 9.31 -148.98 -1.39 -11.17 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.07 1.05 5.41 -2.39 -0.01 1.03 16 31 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.12 2.49 7.35 -2.92 -0.02 2.47 16 35 H 0.10 1.92 6.81 -2.39 -0.02 1.90 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 2.74 8.04 -2.39 -0.02 2.72 16 38 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 39 H 0.41 13.77 8.32 -92.71 -0.77 13.00 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.82 5.86 -2.39 -0.01 2.81 16 45 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -72.70 371.68 -0.47 -73.17 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.21 Total: 24.86 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.04 Total: 3.97 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -6.32 Total: -106.64 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.43 Total: -39.49 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.70 -0.47 -73.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741802229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.825 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds