Wall clock time and date at job start Tue Mar 31 2020 12:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 112.84737 * 2 1 4 4 C 1.42904 * 113.99815 * 50.33621 * 3 2 1 5 5 C 1.50695 * 109.46771 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00255 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99713 * 179.97438 * 5 4 3 8 8 C 1.46505 * 120.00348 * 359.97438 * 7 5 4 9 9 C 1.50701 * 109.46907 * 270.00368 * 8 7 5 10 10 H 1.07998 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99943 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99766 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99763 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47404 * 90.00276 * 13 11 9 15 15 H 1.48508 * 109.47194 * 210.00087 * 13 11 9 16 16 H 1.48501 * 109.47399 * 329.99755 * 13 11 9 17 17 C 1.46504 * 120.00412 * 179.97438 * 7 5 4 18 18 C 1.50707 * 109.46935 * 270.00507 * 17 7 5 19 19 C 1.38227 * 119.62059 * 95.01845 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 274.99275 * 18 17 7 24 24 C 1.53778 * 113.61550 * 131.19962 * 2 1 3 25 25 C 1.53952 * 87.01961 * 89.23320 * 24 2 1 26 26 C 1.53777 * 87.11241 * 25.36229 * 25 24 2 27 27 H 1.09007 * 109.47159 * 69.66552 * 1 2 3 28 28 H 1.09000 * 109.46787 * 189.66101 * 1 2 3 29 29 H 1.08996 * 109.47242 * 309.66489 * 1 2 3 30 30 H 1.08999 * 109.47025 * 59.99556 * 4 3 2 31 31 H 1.08998 * 109.46740 * 299.99559 * 4 3 2 32 32 H 1.08999 * 109.46642 * 29.99521 * 8 7 5 33 33 H 1.08999 * 109.47585 * 149.99676 * 8 7 5 34 34 H 0.97001 * 119.99123 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47679 * 149.99974 * 17 7 5 36 36 H 1.09003 * 109.46652 * 29.99934 * 17 7 5 37 37 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 38 38 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 41 41 H 1.09008 * 113.61293 * 203.75042 * 24 2 1 42 42 H 1.08996 * 113.61404 * 334.64832 * 24 2 1 43 43 H 1.09000 * 113.53211 * 270.80690 * 25 24 2 44 44 H 1.09003 * 113.74447 * 139.94763 * 25 24 2 45 45 H 1.08997 * 113.61473 * 220.08824 * 26 25 24 46 46 H 1.09001 * 113.61442 * 89.19427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 1.5426 2.1761 1.0050 5 6 2.1954 3.5312 0.9130 6 8 3.0420 3.7405 0.0701 7 7 1.8385 4.5105 1.7673 8 6 0.8154 4.2579 2.7851 9 6 -0.5429 4.5956 2.2265 10 1 -0.6349 4.9622 1.2148 11 6 -1.6683 4.4367 3.0072 12 7 -2.8536 4.7319 2.5199 13 14 -1.5092 3.8020 4.7568 14 1 -1.3307 4.9476 5.6847 15 1 -2.7376 3.0533 5.1254 16 1 -0.3330 2.9005 4.8514 17 6 2.4735 5.8278 1.6783 18 6 3.6989 5.8550 2.5552 19 6 4.9381 5.5840 2.0061 20 6 6.0595 5.6169 2.8204 21 6 5.8907 5.9127 4.1646 22 6 4.6205 6.1732 4.6423 23 7 3.5764 6.1375 3.8373 24 6 2.1460 -0.9281 1.0602 25 6 2.0951 -2.0419 -0.0014 26 6 2.1460 -0.9279 -1.0603 27 1 -0.3634 0.3571 -0.9637 28 1 -0.3633 -1.0131 0.1725 29 1 -0.3633 0.6559 0.7911 30 1 1.7308 1.7477 1.9894 31 1 0.4682 2.2798 0.8532 32 1 0.8394 3.2064 3.0711 33 1 1.0127 4.8771 3.6602 34 1 -3.6453 4.6197 3.0690 35 1 1.7718 6.5927 2.0107 36 1 2.7615 6.0232 0.6454 37 1 5.0319 5.3529 0.9553 38 1 7.0410 5.4131 2.4182 39 1 6.7417 5.9436 4.8289 40 1 4.4810 6.4084 5.6871 41 1 3.1586 -0.6477 1.3506 42 1 1.4940 -1.1080 1.9149 43 1 1.1596 -2.6013 -0.0007 44 1 2.9738 -2.6868 -0.0034 45 1 1.4940 -1.1078 -1.9150 46 1 3.1585 -0.6476 -1.3508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746162158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:11 Heat of formation + Delta-G solvation = -18.007290 kcal Electronic energy + Delta-G solvation = -27309.701987 eV Core-core repulsion = 23586.575501 eV Total energy + Delta-G solvation = -3723.126486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18397 -39.78424 -38.75801 -35.66883 -35.06382 -32.81399 -32.25970 -31.63257 -28.96055 -28.46830 -27.92784 -25.86982 -25.41578 -23.37674 -23.11118 -22.45819 -21.82322 -18.73952 -18.59185 -17.20125 -17.08377 -16.62001 -16.26269 -15.79060 -15.56259 -15.48109 -15.25599 -14.89806 -14.37891 -14.19440 -13.76761 -13.48702 -13.25620 -13.08257 -12.91583 -12.66435 -12.42736 -12.25709 -11.98747 -11.96711 -11.76287 -11.58216 -11.46052 -11.21487 -11.05757 -10.92315 -10.69766 -10.65083 -10.29402 -10.10173 -9.75701 -9.64982 -9.30052 -9.19131 -9.15894 -8.80416 -8.69550 -7.85669 -6.22282 -4.24036 1.21766 1.43464 3.18714 3.23702 3.25380 3.27947 3.35551 3.97424 4.26782 4.35762 4.51846 4.59107 4.62941 4.80247 4.88074 4.91309 4.96195 5.08747 5.18591 5.30273 5.34530 5.35448 5.54798 5.63999 5.70717 5.74202 5.76161 5.80150 5.81940 5.86603 5.92539 5.95720 6.07833 6.14511 6.18566 6.25612 6.28816 6.33094 6.44624 6.47223 6.69614 6.85327 7.20691 7.43432 7.51008 8.03835 8.21571 8.38107 8.79735 8.87685 9.37084 10.90076 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008169 B = 0.005535 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.564996 B = 5057.876962 C = 7414.369066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 O -0.350 6.350 4 C 0.046 3.954 5 C 0.524 3.476 6 O -0.550 6.550 7 N -0.582 5.582 8 C 0.207 3.793 9 C -0.542 4.542 10 H 0.080 0.920 11 C 0.079 3.921 12 N -0.889 5.889 13 Si 0.869 3.131 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.169 3.831 18 C 0.118 3.882 19 C -0.150 4.150 20 C -0.082 4.082 21 C -0.180 4.180 22 C 0.093 3.907 23 N -0.468 5.468 24 C -0.164 4.164 25 C -0.138 4.138 26 C -0.119 4.119 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -6.754 0.542 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 O -0.269 6.269 4 C -0.034 4.034 5 C 0.311 3.689 6 O -0.428 6.428 7 N -0.313 5.313 8 C 0.086 3.914 9 C -0.581 4.581 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.527 5.527 13 Si 0.696 3.304 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.190 1.190 17 C 0.045 3.955 18 C -0.020 4.020 19 C -0.170 4.170 20 C -0.108 4.108 21 C -0.201 4.201 22 C -0.064 4.064 23 N -0.178 5.178 24 C -0.202 4.202 25 C -0.176 4.176 26 C -0.157 4.157 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.376 -6.408 0.348 13.941 hybrid contribution 0.507 -0.532 1.085 1.310 sum 12.882 -6.941 1.433 14.703 Atomic orbital electron populations 1.22133 0.93544 1.02885 1.03802 1.23011 0.93226 0.82108 0.97031 1.88012 1.63030 1.21482 1.54328 1.22236 0.99827 0.89128 0.92162 1.20100 0.82076 0.85864 0.80821 1.90596 1.33420 1.82500 1.36302 1.47769 1.39260 1.10221 1.34084 1.19907 0.86949 0.96930 0.87648 1.21375 0.88747 1.45797 1.02131 0.90187 1.24838 0.95090 0.94604 0.97962 1.69892 0.98110 1.47578 1.37096 0.86956 0.78003 0.79887 0.85592 1.19647 1.20935 1.19009 1.20170 0.90772 0.86558 0.97985 1.21893 0.95210 0.93937 0.91008 1.22160 0.92973 0.99848 1.02021 1.21567 0.99043 0.96534 0.93702 1.22092 0.98975 1.02580 0.96404 1.22751 0.88197 0.95918 0.99581 1.67576 1.33799 1.11976 1.04435 1.23636 1.02104 0.96836 0.97616 1.22702 1.02156 0.96024 0.96708 1.23044 1.02073 0.93965 0.96570 0.91241 0.91348 0.90768 0.91202 0.88343 0.95315 0.93985 0.92355 0.88106 0.88875 0.84252 0.85183 0.85252 0.83056 0.89469 0.91212 0.90015 0.91050 0.90846 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.80 37.16 0.33 -1.96 16 2 C 0.09 1.25 1.39 -89.81 -0.12 1.13 16 3 O -0.35 -6.51 9.83 -55.14 -0.54 -7.05 16 4 C 0.05 0.87 4.34 36.00 0.16 1.03 16 5 C 0.52 11.10 7.75 -10.99 -0.09 11.02 16 6 O -0.55 -12.45 16.04 -14.35 -0.23 -12.68 16 7 N -0.58 -12.16 2.44 -176.43 -0.43 -12.59 16 8 C 0.21 4.66 4.03 -5.19 -0.02 4.64 16 9 C -0.54 -14.18 9.83 -34.44 -0.34 -14.52 16 10 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 13 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 17 C 0.17 3.17 5.72 -5.19 -0.03 3.14 16 18 C 0.12 2.05 6.36 -82.58 -0.53 1.53 16 19 C -0.15 -2.29 9.72 -39.44 -0.38 -2.68 16 20 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 21 C -0.18 -2.14 10.11 -39.44 -0.40 -2.53 16 22 C 0.09 1.28 11.18 -17.55 -0.20 1.09 16 23 N -0.47 -8.12 10.27 -9.47 -0.10 -8.22 16 24 C -0.16 -2.06 7.33 -25.83 -0.19 -2.25 16 25 C -0.14 -1.43 7.74 -25.83 -0.20 -1.63 16 26 C -0.12 -1.44 7.50 -25.92 -0.19 -1.64 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.78 7.34 -51.93 -0.38 0.39 16 29 H 0.07 1.13 6.27 -51.93 -0.33 0.80 16 30 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 31 H 0.10 1.97 6.25 -51.93 -0.32 1.64 16 32 H 0.03 0.64 5.50 -51.93 -0.29 0.35 16 33 H 0.04 0.97 7.50 -51.93 -0.39 0.58 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.92 8.07 -51.93 -0.42 1.50 16 36 H 0.09 1.67 7.32 -51.93 -0.38 1.29 16 37 H 0.14 2.14 8.01 -52.49 -0.42 1.72 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 42 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.08 0.75 7.64 -51.93 -0.40 0.35 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 46 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -31.45 378.74 -9.28 -40.74 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.09 Total: 6.66 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.70 Total: -3.05 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.25 Total: -45.62 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.77 Total: -19.73 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.45 -9.28 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746162158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.729 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds