Wall clock time and date at job start Tue Mar 31 2020 12:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 112.84737 * 2 1 4 4 C 1.42904 * 113.99815 * 50.33621 * 3 2 1 5 5 C 1.50695 * 109.46771 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00255 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99713 * 179.97438 * 5 4 3 8 8 C 1.46505 * 120.00348 * 359.97438 * 7 5 4 9 9 C 1.50701 * 109.46907 * 270.00368 * 8 7 5 10 10 H 1.07998 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99943 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99766 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99763 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47404 * 90.00276 * 13 11 9 15 15 H 1.48508 * 109.47194 * 210.00087 * 13 11 9 16 16 H 1.48501 * 109.47399 * 329.99755 * 13 11 9 17 17 C 1.46504 * 120.00412 * 179.97438 * 7 5 4 18 18 C 1.50707 * 109.46935 * 270.00507 * 17 7 5 19 19 C 1.38227 * 119.62059 * 95.01845 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 274.99275 * 18 17 7 24 24 C 1.53778 * 113.61550 * 131.19962 * 2 1 3 25 25 C 1.53952 * 87.01961 * 89.23320 * 24 2 1 26 26 C 1.53777 * 87.11241 * 25.36229 * 25 24 2 27 27 H 1.09007 * 109.47159 * 69.66552 * 1 2 3 28 28 H 1.09000 * 109.46787 * 189.66101 * 1 2 3 29 29 H 1.08996 * 109.47242 * 309.66489 * 1 2 3 30 30 H 1.08999 * 109.47025 * 59.99556 * 4 3 2 31 31 H 1.08998 * 109.46740 * 299.99559 * 4 3 2 32 32 H 1.08999 * 109.46642 * 29.99521 * 8 7 5 33 33 H 1.08999 * 109.47585 * 149.99676 * 8 7 5 34 34 H 0.97001 * 119.99123 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47679 * 149.99974 * 17 7 5 36 36 H 1.09003 * 109.46652 * 29.99934 * 17 7 5 37 37 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 38 38 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 41 41 H 1.09008 * 113.61293 * 203.75042 * 24 2 1 42 42 H 1.08996 * 113.61404 * 334.64832 * 24 2 1 43 43 H 1.09000 * 113.53211 * 270.80690 * 25 24 2 44 44 H 1.09003 * 113.74447 * 139.94763 * 25 24 2 45 45 H 1.08997 * 113.61473 * 220.08824 * 26 25 24 46 46 H 1.09001 * 113.61442 * 89.19427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 1.5426 2.1761 1.0050 5 6 2.1954 3.5312 0.9130 6 8 3.0420 3.7405 0.0701 7 7 1.8385 4.5105 1.7673 8 6 0.8154 4.2579 2.7851 9 6 -0.5429 4.5956 2.2265 10 1 -0.6349 4.9622 1.2148 11 6 -1.6683 4.4367 3.0072 12 7 -2.8536 4.7319 2.5199 13 14 -1.5092 3.8020 4.7568 14 1 -1.3307 4.9476 5.6847 15 1 -2.7376 3.0533 5.1254 16 1 -0.3330 2.9005 4.8514 17 6 2.4735 5.8278 1.6783 18 6 3.6989 5.8550 2.5552 19 6 4.9381 5.5840 2.0061 20 6 6.0595 5.6169 2.8204 21 6 5.8907 5.9127 4.1646 22 6 4.6205 6.1732 4.6423 23 7 3.5764 6.1375 3.8373 24 6 2.1460 -0.9281 1.0602 25 6 2.0951 -2.0419 -0.0014 26 6 2.1460 -0.9279 -1.0603 27 1 -0.3634 0.3571 -0.9637 28 1 -0.3633 -1.0131 0.1725 29 1 -0.3633 0.6559 0.7911 30 1 1.7308 1.7477 1.9894 31 1 0.4682 2.2798 0.8532 32 1 0.8394 3.2064 3.0711 33 1 1.0127 4.8771 3.6602 34 1 -3.6453 4.6197 3.0690 35 1 1.7718 6.5927 2.0107 36 1 2.7615 6.0232 0.6454 37 1 5.0319 5.3529 0.9553 38 1 7.0410 5.4131 2.4182 39 1 6.7417 5.9436 4.8289 40 1 4.4810 6.4084 5.6871 41 1 3.1586 -0.6477 1.3506 42 1 1.4940 -1.1080 1.9149 43 1 1.1596 -2.6013 -0.0007 44 1 2.9738 -2.6868 -0.0034 45 1 1.4940 -1.1078 -1.9150 46 1 3.1585 -0.6476 -1.3508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746162158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:09 Heat of formation + Delta-G solvation = -35.962807 kcal Electronic energy + Delta-G solvation = -27310.480597 eV Core-core repulsion = 23586.575501 eV Total energy + Delta-G solvation = -3723.905095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50212 -40.92932 -40.18783 -37.09903 -36.64861 -34.70879 -33.43562 -32.99953 -30.05056 -30.02795 -29.67227 -27.13760 -26.55315 -24.66265 -24.25737 -24.06632 -23.03663 -20.24936 -19.83079 -19.17127 -18.42571 -17.85836 -17.59084 -17.27110 -17.02828 -16.77866 -16.41223 -16.18352 -15.89963 -15.68562 -15.10497 -14.72123 -14.63210 -14.47021 -14.15517 -14.07792 -13.91830 -13.78489 -13.37924 -13.19120 -13.08455 -12.92053 -12.77865 -12.64942 -12.48002 -12.20944 -12.12981 -12.02476 -11.73190 -11.69462 -11.16532 -10.89110 -10.81616 -10.75940 -10.44920 -10.42163 -9.97341 -9.56331 -8.31978 -6.39463 0.10526 0.37453 1.37054 1.39460 1.47573 1.55475 1.88027 2.31990 2.78444 3.01399 3.04061 3.33626 3.53056 3.61289 3.69967 3.80306 3.85984 3.92185 4.02383 4.11240 4.17464 4.24446 4.28571 4.43612 4.46293 4.55747 4.57924 4.64890 4.71625 4.74502 4.83015 4.84478 4.85335 4.86788 5.00964 5.06187 5.10177 5.22416 5.26690 5.29031 5.39606 5.44922 5.52318 5.79916 6.11648 6.19985 6.49379 6.65429 7.08106 7.13891 7.27360 8.84001 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008169 B = 0.005535 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.564996 B = 5057.876962 C = 7414.369066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.062 3.938 3 O -0.373 6.373 4 C 0.057 3.943 5 C 0.516 3.484 6 O -0.569 6.569 7 N -0.584 5.584 8 C 0.222 3.778 9 C -0.542 4.542 10 H 0.034 0.966 11 C 0.026 3.974 12 N -0.937 5.937 13 Si 0.935 3.065 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.242 1.242 17 C 0.168 3.832 18 C 0.095 3.905 19 C -0.162 4.162 20 C -0.078 4.078 21 C -0.162 4.162 22 C 0.082 3.918 23 N -0.504 5.504 24 C -0.164 4.164 25 C -0.120 4.120 26 C -0.119 4.119 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.180 0.820 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.206 -8.745 2.806 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 O -0.292 6.292 4 C -0.023 4.023 5 C 0.305 3.695 6 O -0.449 6.449 7 N -0.315 5.315 8 C 0.100 3.900 9 C -0.580 4.580 10 H 0.053 0.947 11 C -0.173 4.173 12 N -0.576 5.576 13 Si 0.758 3.242 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.166 1.166 17 C 0.045 3.955 18 C -0.042 4.042 19 C -0.182 4.182 20 C -0.104 4.104 21 C -0.181 4.181 22 C -0.075 4.075 23 N -0.214 5.214 24 C -0.202 4.202 25 C -0.157 4.157 26 C -0.157 4.157 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.182 0.818 39 H 0.191 0.809 40 H 0.197 0.803 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.740 -8.400 2.598 17.163 hybrid contribution -0.165 0.159 0.308 0.384 sum 14.575 -8.241 2.906 16.994 Atomic orbital electron populations 1.22120 0.93223 1.04068 1.02645 1.23545 0.93794 0.80683 0.99698 1.87992 1.63645 1.23284 1.54251 1.22041 0.98559 0.88494 0.93169 1.20527 0.81929 0.86661 0.80428 1.90566 1.34389 1.83009 1.36941 1.47798 1.38935 1.11058 1.33696 1.19636 0.85308 0.97378 0.87699 1.21454 0.90955 1.45309 1.00313 0.94721 1.25677 0.94397 0.94683 1.02560 1.70037 0.99144 1.49280 1.39122 0.85903 0.78944 0.79757 0.79639 1.19178 1.20406 1.16560 1.20158 0.91590 0.85210 0.98555 1.21485 0.94850 0.96613 0.91286 1.22143 0.93411 1.00588 1.02078 1.21977 0.99423 0.95099 0.93893 1.22541 0.99478 0.99640 0.96470 1.23327 0.88372 0.95369 1.00425 1.67476 1.35997 1.13286 1.04617 1.23627 1.01545 0.97065 0.97933 1.22687 1.03936 0.95161 0.93929 1.23096 1.01627 0.93917 0.97021 0.91972 0.88488 0.92811 0.89878 0.89800 0.94052 0.93835 0.92131 0.89512 0.89187 0.85230 0.81833 0.80919 0.80335 0.90193 0.90540 0.88204 0.89264 0.89761 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 8.80 71.98 0.63 -3.80 16 2 C 0.06 1.76 1.39 -10.27 -0.01 1.74 16 3 O -0.37 -14.11 9.83 -129.94 -1.28 -15.39 16 4 C 0.06 2.23 4.34 71.23 0.31 2.54 16 5 C 0.52 22.69 7.75 87.66 0.68 23.37 16 6 O -0.57 -26.77 16.04 16.02 0.26 -26.52 16 7 N -0.58 -25.37 2.44 -830.48 -2.03 -27.40 16 8 C 0.22 10.15 4.03 85.63 0.35 10.49 16 9 C -0.54 -29.52 9.83 25.60 0.25 -29.27 16 10 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 11 C 0.03 1.45 5.47 84.66 0.46 1.91 16 12 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 13 Si 0.93 40.89 27.47 68.60 1.88 42.77 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 17 C 0.17 6.68 5.72 85.63 0.49 7.17 16 18 C 0.10 3.35 6.36 42.55 0.27 3.62 16 19 C -0.16 -4.90 9.72 22.36 0.22 -4.68 16 20 C -0.08 -1.74 10.18 22.47 0.23 -1.52 16 21 C -0.16 -3.19 10.11 22.36 0.23 -2.96 16 22 C 0.08 2.06 11.18 84.67 0.95 3.01 16 23 N -0.50 -17.15 10.27 -183.88 -1.89 -19.04 16 24 C -0.16 -3.82 7.33 31.18 0.23 -3.59 16 25 C -0.12 -2.11 7.74 31.18 0.24 -1.87 16 26 C -0.12 -2.71 7.50 31.12 0.23 -2.48 16 27 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.10 2.01 7.34 -2.39 -0.02 1.99 16 29 H 0.05 1.66 6.27 -2.39 -0.01 1.65 16 30 H 0.08 2.99 7.32 -2.39 -0.02 2.97 16 31 H 0.08 3.53 6.25 -2.39 -0.01 3.51 16 32 H 0.04 1.80 5.50 -2.39 -0.01 1.79 16 33 H 0.04 2.00 7.50 -2.39 -0.02 1.98 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.09 3.57 8.07 -2.39 -0.02 3.55 16 36 H 0.09 3.51 7.32 -2.39 -0.02 3.49 16 37 H 0.13 4.08 8.01 -2.91 -0.02 4.06 16 38 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 41 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 43 H 0.10 1.43 7.64 -2.39 -0.02 1.42 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 46 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -71.50 378.74 3.91 -67.59 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.91 Total: 29.64 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.75 Total: 3.69 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.62 Total: -101.79 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.02 Total: -41.90 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.77 kcal Total: -71.50 3.91 -67.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746162158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.630 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds