Wall clock time and date at job start Tue Mar 31 2020 12:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 115.54866 * 2 1 4 4 C 1.52999 * 117.49811 * 145.66376 * 2 1 3 5 5 N 1.46502 * 117.49895 * 214.98467 * 4 2 1 6 6 C 1.34768 * 120.00166 * 155.08894 * 5 4 2 7 7 O 1.21591 * 120.00361 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00445 * 179.97438 * 6 5 4 9 9 C 1.39943 * 120.00484 * 174.72950 * 8 6 5 10 10 C 1.38955 * 120.03478 * 326.34751 * 9 8 6 11 11 C 1.38155 * 120.06838 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.13876 * 359.70055 * 11 10 9 13 13 C 1.38912 * 120.06629 * 0.55355 * 12 11 10 14 14 O 1.35747 * 120.03448 * 179.74558 * 13 12 11 15 15 C 1.34825 * 116.99973 * 173.82546 * 14 13 12 16 16 H 1.07996 * 120.00187 * 354.59146 * 15 14 13 17 17 C 1.38657 * 119.99760 * 174.59112 * 15 14 13 18 18 N 1.31562 * 120.00184 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46676 * 90.00256 * 19 17 15 21 21 H 1.48495 * 109.46941 * 209.99883 * 19 17 15 22 22 H 1.48497 * 109.47305 * 330.00466 * 19 17 15 23 23 C 1.38708 * 120.03573 * 146.36795 * 9 8 6 24 24 C 1.53002 * 60.03071 * 107.48293 * 4 2 1 25 25 C 1.52996 * 117.50046 * 107.50300 * 24 4 2 26 26 C 1.53003 * 117.49471 * 252.52162 * 24 4 2 27 27 H 1.08996 * 109.47178 * 325.72647 * 1 2 3 28 28 H 1.08998 * 109.46623 * 85.72756 * 1 2 3 29 29 H 1.08997 * 109.47278 * 205.72271 * 1 2 3 30 30 H 1.08998 * 109.47196 * 154.27745 * 3 2 1 31 31 H 1.09007 * 109.46593 * 274.27772 * 3 2 1 32 32 H 1.08993 * 109.47134 * 34.27326 * 3 2 1 33 33 H 1.08998 * 117.49990 * 359.97438 * 4 2 1 34 34 H 0.97003 * 119.99930 * 335.08254 * 5 4 2 35 35 H 0.97006 * 119.99843 * 354.73322 * 8 6 5 36 36 H 1.07998 * 119.96551 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.93284 * 180.02562 * 11 10 9 38 38 H 1.07993 * 119.96695 * 180.30197 * 12 11 10 39 39 H 0.97001 * 120.00059 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07020 * 0.02562 * 23 9 8 41 41 H 1.09000 * 109.46802 * 111.38843 * 25 24 4 42 42 H 1.09000 * 109.47158 * 231.39084 * 25 24 4 43 43 H 1.09004 * 109.47241 * 351.39003 * 25 24 4 44 44 H 1.08997 * 109.47271 * 8.60923 * 26 24 4 45 45 H 1.09007 * 109.46857 * 128.61062 * 26 24 4 46 46 H 1.08999 * 109.47065 * 248.60905 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1206 0.7655 5 7 3.4932 -0.7899 1.4419 6 6 3.8996 -1.5165 2.5017 7 8 3.2230 -2.4464 2.8968 8 7 5.0559 -1.2127 3.1237 9 6 5.4239 -1.8945 4.2891 10 6 4.4490 -2.3192 5.1836 11 6 4.8116 -2.9919 6.3345 12 6 6.1434 -3.2500 6.5970 13 6 7.1230 -2.8234 5.7093 14 8 8.4316 -3.0728 5.9703 15 6 9.3202 -2.7469 5.0101 16 1 8.9731 -2.3902 4.0517 17 6 10.6798 -2.8697 5.2532 18 7 11.1027 -3.3048 6.4206 19 14 11.9110 -2.4189 3.9226 20 1 12.2708 -0.9835 4.0471 21 1 13.1318 -3.2503 4.0756 22 1 11.3090 -2.6643 2.5875 23 6 6.7621 -2.1467 4.5527 24 6 2.2368 -1.1221 -0.7645 25 6 3.5495 -0.7781 -1.4711 26 6 1.3590 -2.1578 -1.4701 27 1 -0.3633 0.8492 0.5787 28 1 -0.3632 0.0766 -1.0248 29 1 -0.3634 -0.9258 0.4460 30 1 3.1819 1.3090 0.4460 31 1 2.2774 1.7412 -1.0249 32 1 1.5804 2.0745 0.5787 33 1 1.6112 -1.8577 1.2695 34 1 4.0329 -0.0480 1.1269 35 1 5.6332 -0.5213 2.7635 36 1 3.4069 -2.1232 4.9789 37 1 4.0521 -3.3213 7.0281 38 1 6.4233 -3.7803 7.4951 39 1 12.0538 -3.3910 6.5905 40 1 7.5217 -1.8170 3.8594 41 1 3.9369 -1.6662 -1.9703 42 1 3.3710 0.0045 -2.2084 43 1 4.2758 -0.4276 -0.7377 44 1 0.7296 -2.6611 -0.7362 45 1 0.7297 -1.6590 -2.2073 46 1 1.9922 -2.8910 -1.9695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752638421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:50 Heat of formation + Delta-G solvation = -6.263808 kcal Electronic energy + Delta-G solvation = -26297.758402 eV Core-core repulsion = 22575.141152 eV Total energy + Delta-G solvation = -3722.617250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.75501 -39.56047 -38.51619 -36.42478 -34.22585 -33.50163 -32.20343 -31.50105 -29.34517 -28.96453 -28.50339 -27.04150 -26.60681 -25.27959 -22.64281 -21.78070 -20.49938 -20.32709 -18.68520 -18.10830 -17.84246 -17.35755 -16.24468 -15.38837 -15.23656 -15.13321 -14.86862 -14.76094 -14.24237 -14.17482 -13.83940 -13.70612 -13.50237 -12.98704 -12.95241 -12.87161 -12.81996 -12.59413 -12.38095 -12.33423 -12.14233 -11.85007 -11.76024 -11.59125 -11.15226 -11.11912 -11.05543 -10.81529 -10.71816 -10.43143 -10.05559 -9.71449 -9.60819 -9.46477 -8.79868 -8.73086 -7.68342 -7.11427 -6.43736 -4.03280 2.07383 2.41847 2.59032 3.09007 3.12292 3.14344 3.17487 3.56451 3.96493 4.08464 4.33682 4.40029 4.44747 4.63372 4.72290 4.80190 5.12008 5.14209 5.24670 5.30374 5.38339 5.42129 5.49469 5.53584 5.54171 5.62423 5.64483 5.70525 5.72839 5.74586 5.86072 5.96273 6.03539 6.08836 6.10711 6.25835 6.27778 6.41780 6.58474 6.81734 7.02885 7.12774 7.28958 7.36051 7.45207 7.85154 7.99715 8.01979 8.62712 9.01785 9.72957 10.74460 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002839 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.409455 B = 9859.795466 C =11032.050846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.133 4.133 3 C -0.114 4.114 4 C 0.120 3.880 5 N -0.716 5.716 6 C 0.707 3.293 7 O -0.568 6.568 8 N -0.682 5.682 9 C 0.199 3.801 10 C -0.204 4.204 11 C -0.063 4.063 12 C -0.202 4.202 13 C 0.169 3.831 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.089 0.911 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.258 4.258 24 C -0.136 4.136 25 C -0.113 4.113 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.395 0.605 35 H 0.402 0.598 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 9.076 -15.240 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.135 4.135 3 C -0.171 4.171 4 C 0.013 3.987 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.443 6.443 8 N -0.328 5.328 9 C 0.105 3.895 10 C -0.225 4.225 11 C -0.082 4.082 12 C -0.222 4.222 13 C 0.115 3.885 14 O -0.080 6.080 15 C -0.467 4.467 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.279 4.279 24 C -0.139 4.139 25 C -0.171 4.171 26 C -0.169 4.169 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.565 8.082 -14.566 24.208 hybrid contribution 1.290 1.021 -1.148 2.007 sum -16.274 9.103 -15.714 24.386 Atomic orbital electron populations 1.21306 0.91516 1.02255 1.01835 1.22235 0.95300 0.91703 1.04216 1.21271 0.99926 0.94067 1.01879 1.21908 0.86805 1.00117 0.89892 1.44579 1.24408 1.35456 1.32604 1.15824 0.81545 0.82225 0.79643 1.90943 1.55929 1.30482 1.66970 1.42574 1.21928 1.41070 1.27238 1.17167 0.92790 0.94973 0.84543 1.20560 0.98515 1.08010 0.95431 1.20524 0.94720 0.96942 0.95970 1.20243 0.91383 1.08822 1.01733 1.19063 0.85964 0.91504 0.91980 1.84018 1.10615 1.71771 1.41621 1.21260 0.85845 1.46178 0.93453 0.89311 1.25269 0.96764 0.96751 0.97713 1.70038 1.15572 1.42492 1.21690 0.85739 0.79515 0.78609 0.79711 1.19937 1.20249 1.19294 1.20775 0.94264 1.10612 1.02298 1.22287 0.98103 0.99307 0.94161 1.21251 0.94440 1.01662 0.99711 1.21300 0.98661 0.97007 0.99926 0.92108 0.92031 0.92115 0.92802 0.91966 0.91832 0.84412 0.76803 0.76396 0.86236 0.86643 0.86406 0.92048 0.85337 0.91934 0.92185 0.92673 0.92167 0.92151 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 8.88 37.16 0.33 -0.43 16 2 C -0.13 -1.05 2.70 -154.47 -0.42 -1.46 16 3 C -0.11 -0.77 8.82 37.16 0.33 -0.45 16 4 C 0.12 1.25 5.67 -67.93 -0.39 0.87 16 5 N -0.72 -8.01 4.62 -58.68 -0.27 -8.28 16 6 C 0.71 10.97 8.30 -86.93 -0.72 10.25 16 7 O -0.57 -10.97 13.61 5.29 0.07 -10.90 16 8 N -0.68 -10.56 5.35 -14.24 -0.08 -10.64 16 9 C 0.20 3.89 6.27 -83.72 -0.52 3.36 16 10 C -0.20 -4.02 8.65 -39.35 -0.34 -4.36 16 11 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 12 C -0.20 -4.40 9.99 -39.35 -0.39 -4.79 16 13 C 0.17 4.14 6.64 -39.13 -0.26 3.88 16 14 O -0.18 -5.06 9.76 0.07 0.00 -5.05 16 15 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 16 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.26 -5.64 9.04 -39.21 -0.35 -5.99 16 24 C -0.14 -1.15 2.70 -154.47 -0.42 -1.57 16 25 C -0.11 -0.89 8.83 37.16 0.33 -0.56 16 26 C -0.11 -0.85 8.88 37.16 0.33 -0.52 16 27 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 28 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 7.78 -51.93 -0.40 0.02 16 30 H 0.05 0.36 5.63 -51.93 -0.29 0.06 16 31 H 0.06 0.37 8.03 -51.92 -0.42 -0.04 16 32 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 33 H 0.14 1.69 7.21 -51.93 -0.37 1.32 16 34 H 0.40 3.42 5.44 -40.82 -0.22 3.20 16 35 H 0.40 4.87 8.83 -40.82 -0.36 4.51 16 36 H 0.12 2.33 6.43 -52.49 -0.34 1.99 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.13 2.75 5.72 -52.49 -0.30 2.45 16 41 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 42 H 0.06 0.40 8.03 -51.93 -0.42 -0.02 16 43 H 0.05 0.43 5.99 -51.93 -0.31 0.12 16 44 H 0.06 0.46 7.78 -51.93 -0.40 0.06 16 45 H 0.06 0.39 8.02 -51.93 -0.42 -0.03 16 46 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -33.21 372.53 -8.20 -41.41 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.58 Total: 10.02 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.70 Total: -12.99 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.41 Total: -43.45 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.07 Total: -15.95 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.21 -8.20 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752638421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.146 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds